General Information of the m6A Target Gene (ID: M6ATAR01015)
Target Name Phosphoenolpyruvate carboxykinase, cytosolic [GTP] (PCK1)
Synonyms
PEPCK-C; EC 4.1.1.32; Serine-protein kinase PCK1; EC 2.7.11.-
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Gene Name PCK1
Chromosomal Location 20q13.31
Family Phosphoenolpyruvate carboxykinase [GTP] family
Function
Cytosolic phosphoenolpyruvate carboxykinase that catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate (OAA) and acts as the rate-limiting enzyme in gluconeogenesis (PubMed:30193097, PubMed:24863970, PubMed:26971250, PubMed:28216384). Regulates cataplerosis and anaplerosis, the processes that control the levels of metabolic intermediates in the citric acid cycle (PubMed:30193097, PubMed:24863970, PubMed:26971250, PubMed:28216384). At low glucose levels, it catalyzes the cataplerotic conversion of oxaloacetate to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle (PubMed:30193097). At high glucose levels, it catalyzes the anaplerotic conversion of phosphoenolpyruvate to oxaloacetate (PubMed:30193097). Acts as a regulator of formation and maintenance of memory CD8(+) T-cells: up-regulated in these cells, where it generates phosphoenolpyruvate, via gluconeogenesis (By similarity). The resultant phosphoenolpyruvate flows to glycogen and pentose phosphate pathway, which is essential for memory CD8(+) T-cells homeostasis (By similarity). In addition to the phosphoenolpyruvate carboxykinase activity, also acts as a protein kinase when phosphorylated at Ser-90: phosphorylation at Ser-90 by AKT1 reduces the binding affinity to oxaloacetate and promotes an atypical serine protein kinase activity using GTP as donor (PubMed:32322062). The protein kinase activity regulates lipogenesis: upon phosphorylation at Ser-90, translocates to the endoplasmic reticulum and catalyzes phosphorylation of INSIG proteins (INSIG1 and INSIG2), thereby disrupting the interaction between INSIG proteins and SCAP and promoting nuclear translocation of SREBP proteins (SREBF1/SREBP1 or SREBF2/SREBP2) and subsequent transcription of downstream lipogenesis-related genes (PubMed:32322062).
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Gene ID 5105
Uniprot ID
PCKGC_HUMAN
HGNC ID
HGNC:8724
KEGG ID
hsa:5105
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01015)
Phosphoenolpyruvate carboxykinase, cytosolic [GTP] (PCK1)
N6-methyladenosine (m6A)
In total 26 m6A sequence/site(s) in this target gene
mod ID: M6ASITE053803 Click to Show/Hide the Full List
mod site chr20:57561127-57561128:+ [2]
Sequence GCACGGCCTTCCCACTGGGAACACAAACTTGCTGGCGGGAA
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000467047.1; ENST00000475833.1; ENST00000319441.6
External Link RMBase: m6A_site_538055
mod ID: M6ASITE053804 Click to Show/Hide the Full List
mod site chr20:57561133-57561134:+ [2]
Sequence CCTTCCCACTGGGAACACAAACTTGCTGGCGGGAAGAGCCC
Motif Score 2.627720238
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000467047.1; ENST00000319441.6; ENST00000475833.1
External Link RMBase: m6A_site_538056
mod ID: M6ASITE053805 Click to Show/Hide the Full List
mod site chr20:57561162-57561163:+ [2]
Sequence CGGGAAGAGCCCGGAAAGAAACCTGTGGATCTCCCTTCGAG
Motif Score 2.185083333
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000319441.6; ENST00000475833.1; ENST00000467047.1
External Link RMBase: m6A_site_538057
mod ID: M6ASITE053806 Click to Show/Hide the Full List
mod site chr20:57561248-57561249:+ [2]
Sequence TTGAAAAATTACAAAGATGAACTCATTTTTTTCCTGAGAGC
Motif Score 3.373380952
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000475833.1; ENST00000319441.6; ENST00000467047.1
External Link RMBase: m6A_site_538058
mod ID: M6ASITE053807 Click to Show/Hide the Full List
mod site chr20:57561472-57561473:+ [2]
Sequence AGTTGTCCAGGGAAGCCTGGACAGCCTACCCCAGGCAGTGA
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000467047.1; ENST00000319441.6; ENST00000475833.1
External Link RMBase: m6A_site_538059
mod ID: M6ASITE053808 Click to Show/Hide the Full List
mod site chr20:57562147-57562148:+ [2]
Sequence CGTCACCCAAGAGCAAAGAGACACAGTGCCCATCCCCAAAA
Motif Score 2.897386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000319441.6; ENST00000475833.1; ENST00000467047.1
External Link RMBase: m6A_site_538060
mod ID: M6ASITE053809 Click to Show/Hide the Full List
mod site chr20:57562167-57562168:+ [2]
Sequence ACACAGTGCCCATCCCCAAAACAGGCCTCAGCCAGCTCGGT
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000319441.6; ENST00000475833.1; ENST00000467047.1
External Link RMBase: m6A_site_538061
mod ID: M6ASITE053810 Click to Show/Hide the Full List
mod site chr20:57562261-57562262:+ [2]
Sequence GTGCATGAAAGGTGAGCGGAACATTGATTTGATTGGGTAAA
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000467047.1; ENST00000475833.1; ENST00000319441.6
External Link RMBase: m6A_site_538062
mod ID: M6ASITE053811 Click to Show/Hide the Full List
mod site chr20:57562282-57562283:+ [2]
Sequence CATTGATTTGATTGGGTAAAACAGCAGAGAGCCTTTTCTTA
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000475833.1; ENST00000319441.6; ENST00000467047.1
External Link RMBase: m6A_site_538063
mod ID: M6ASITE053812 Click to Show/Hide the Full List
mod site chr20:57562600-57562601:+ [2]
Sequence GGTGTGGTGGTGTTAGTGGAACACCGTGAAAATGGGTCTAC
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000498194.1; ENST00000319441.6; ENST00000467047.1
External Link RMBase: m6A_site_538064
mod ID: M6ASITE053813 Click to Show/Hide the Full List
mod site chr20:57563129-57563130:+ [2]
Sequence TGGCAGTGGGTACGGCGGGAACTCGCTGCTCGGGAAGAAGT
Motif Score 3.373380952
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000498194.1; ENST00000467047.1; ENST00000470051.1; ENST00000319441.6
External Link RMBase: m6A_site_538065
mod ID: M6ASITE053814 Click to Show/Hide the Full List
mod site chr20:57563269-57563270:+ [2]
Sequence AGGCCTGGGGGGTGGCAGAAACAAACAGCATTACAGTTCCC
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000498194.1; ENST00000319441.6; ENST00000470051.1; ENST00000467047.1
External Link RMBase: m6A_site_538066
mod ID: M6ASITE053815 Click to Show/Hide the Full List
mod site chr20:57563740-57563741:+ [2]
Sequence GCACAAGGTGACTCTTTTAGACCCAACTCTTGGTAACGATT
Motif Score 2.876744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000467047.1; ENST00000319441.6
External Link RMBase: m6A_site_538067
mod ID: M6ASITE053816 Click to Show/Hide the Full List
mod site chr20:57563763-57563764:+ [2]
Sequence CAACTCTTGGTAACGATTGGACTCAAGCGAATCGTTGGCCT
Motif Score 4.065041667
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000319441.6; ENST00000467047.1
External Link RMBase: m6A_site_538068
mod ID: M6ASITE053817 Click to Show/Hide the Full List
mod site chr20:57563789-57563790:+ [2]
Sequence GCGAATCGTTGGCCTTCGAAACATGTCACATTCTCCTCAGT
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000319441.6; ENST00000467047.1
External Link RMBase: m6A_site_538069
mod ID: M6ASITE053818 Click to Show/Hide the Full List
mod site chr20:57564221-57564222:+ [2]
Sequence TTTTCGGTGTCGCTCCTGGGACTTCAGTGAAGACCAACCCC
Motif Score 4.065041667
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000467047.1; ENST00000485958.1; ENST00000319441.6
External Link RMBase: m6A_site_538070
mod ID: M6ASITE053819 Click to Show/Hide the Full List
mod site chr20:57564233-57564234:+ [2]
Sequence CTCCTGGGACTTCAGTGAAGACCAACCCCAATGCCATCAAG
Motif Score 2.876744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000467047.1; ENST00000319441.6; ENST00000485958.1
External Link RMBase: m6A_site_538071
mod ID: M6ASITE053820 Click to Show/Hide the Full List
mod site chr20:57564254-57564255:+ [2]
Sequence CCAACCCCAATGCCATCAAGACCATCCAGAAGAACACAATC
Motif Score 2.876744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000319441.6; ENST00000485958.1; ENST00000467047.1
External Link RMBase: m6A_site_538072
mod ID: M6ASITE053821 Click to Show/Hide the Full List
mod site chr20:57564267-57564268:+ [2]
Sequence CATCAAGACCATCCAGAAGAACACAATCTTTACCAATGTGG
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000319441.6; ENST00000467047.1; ENST00000485958.1
External Link RMBase: m6A_site_538073
mod ID: M6ASITE053822 Click to Show/Hide the Full List
mod site chr20:57564293-57564294:+ [2]
Sequence TCTTTACCAATGTGGCCGAGACCAGCGACGGGGGCGTTTAC
Motif Score 2.876744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000485958.1; ENST00000467047.1; ENST00000319441.6
External Link RMBase: m6A_site_538074
mod ID: M6ASITE053823 Click to Show/Hide the Full List
mod site chr20:57565073-57565074:+ [3]
Sequence TATGAAGCTCTCAGCTGGCAACATGGAGTCTTTGTGGGGGC
Motif Score 2.173910714
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000319441.6; ENST00000485958.1; ENST00000467047.1
External Link RMBase: m6A_site_538075
mod ID: M6ASITE053824 Click to Show/Hide the Full List
mod site chr20:57565493-57565494:+ [2]
Sequence TGTCAACTGGTTCCGGAAGGACAAGGAAGGCAAATTCCTCT
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000319441.6; ENST00000467047.1
External Link RMBase: m6A_site_538076
mod ID: M6ASITE053825 Click to Show/Hide the Full List
mod site chr20:57565532-57565533:+ [2]
Sequence CTGGCCAGGCTTTGGAGAGAACTCCAGGGTGCTGGAGTGGA
Motif Score 3.373380952
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000467047.1; ENST00000319441.6
External Link RMBase: m6A_site_538077
mod ID: M6ASITE053826 Click to Show/Hide the Full List
mod site chr20:57565604-57565605:+ [3]
Sequence CAAGCTCACGCCCATAGGCTACATCCCCAAGGAGGATGCCC
Motif Score 2.078666667
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000467047.1; ENST00000319441.6
External Link RMBase: m6A_site_538078
mod ID: M6ASITE053827 Click to Show/Hide the Full List
mod site chr20:57565628-57565629:+ [2]
Sequence CCCCAAGGAGGATGCCCTGAACCTGAAAGGCCTGGGGCACA
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000467047.1; ENST00000319441.6
External Link RMBase: m6A_site_538079
mod ID: M6ASITE053828 Click to Show/Hide the Full List
mod site chr20:57565706-57565707:+ [2]
Sequence CTGGGAGAAGGAGGTGGAAGACATCGAGAAGTATCTGGAGG
Motif Score 2.897386905
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000467047.1; ENST00000319441.6
External Link RMBase: m6A_site_538080