General Information of the m6A Target Gene (ID: M6ATAR01009)
Target Name Zinc finger protein RFP (TRIM27)
Synonyms
EC 2.3.2.27; RING finger protein 76; Ret finger protein; Tripartite motif-containing protein 27
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Gene Name TRIM27
Chromosomal Location 6p22.1
Family TRIM/RBCC family
Function
E3 ubiquitin-protein ligase that mediates ubiquitination of various substrates and thereby plays a role in diffent processes including proliferation, innate immunity, apoptosis, immune response or autophagy (PubMed:22829933, PubMed:24144979, PubMed:29688809, PubMed:36111389). Ubiquitinates PIK3C2B and inhibits its activity by mediating the formation of 'Lys-48'-linked polyubiquitin chains; the function inhibits CD4 T-cell activation. Acts as a regulator of retrograde transport: together with MAGEL2, mediates the formation of 'Lys-63'-linked polyubiquitin chains at 'Lys-220' of WASHC1, leading to promote endosomal F-actin assembly (PubMed:23452853). Has a transcriptional repressor activity by cooperating with EPC1. Induces apoptosis by activating Jun N-terminal kinase and p38 kinase and also increases caspase-3-like activity independently of mitochondrial events. May function in male germ cell development. Has DNA-binding activity and preferentially bound to double-stranded DNA. Forms a complex with and ubiquitinates the ubiquitin-specific protease USP7, which in turn deubiquitinates RIPK1 resulting in the positive regulation of TNF-alpha-induced apoptosis (PubMed:24144979). In addition, acts with USP7 or PTPN11 as an inhibitor of the antiviral signaling pathway by promoting kinase TBK1 ubiquitination and degradation (PubMed:26358190, PubMed:29688809). Acts as a negative regulator of NOD2 signaling by mediating ubiquitination of NOD2, promoting its degradation by the proteasome (PubMed:22829933). Alternatively, facilitates mitophagy via stabilization of active TBK1 (PubMed:36111389). Negatively regulates autophagy flux under basal conditions by directly polyubiquitinating ULK1 (PubMed:35670107). During starvation-induced autophagy, catalyzes non-degradative ubiquitination of the kinase STK38L promoting its activation and phosphorylation of ULK1 leading to its ubiquitination and degradation to restrain the amplitude and duration of autophagy (PubMed:35670107).
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Gene ID 5987
Uniprot ID
TRI27_HUMAN
HGNC ID
HGNC:9975
KEGG ID
hsa:5987
Full List of Crosstalk(s) between m6A Modification and Epigenetic Regulation Related to This Regulator
Non-coding RNA
m6A Regulator: YTH domain-containing family protein 1 (YTHDF1)
In total 1 item(s) under this m6A regulator
Crosstalk ID: M6ACROT05269
Epigenetic Regulator hsa-miR-136-5p
Regulated Target YTH domain-containing family protein 1 (YTHDF1)
Crosstalk relationship ncRNA → m6A
Disease Colorectal cancer
Drug Cisplatin
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR01009)
Zinc finger protein RFP (TRIM27)
Adenosine-to-Inosine editing (A-to-I)
In total 12 m6A sequence/site(s) in this target gene
mod ID: A2ISITE001378 Click to Show/Hide the Full List
mod site chr6:28904954-28904955:- [3]
Sequence ACACCACTGCGCTCCAGCCTAGGCAACAGAGCAAGACCCTA
Transcript ID List ENST00000467742.1; rmsk_1903183; ENST00000377194.7; ENST00000414543.5; ENST00000377199.4; ENST00000481474.5
External Link RMBase: RNA-editing_site_115244
mod ID: A2ISITE001379 Click to Show/Hide the Full List
mod site chr6:28904990-28904991:- [3]
Sequence GAGCCCAGGAGTTTGGGGTTACAATGAACTATGACCACACC
Transcript ID List ENST00000481474.5; ENST00000414543.5; ENST00000377199.4; ENST00000467742.1; rmsk_1903183; ENST00000377194.7
External Link RMBase: RNA-editing_site_115245
mod ID: A2ISITE001380 Click to Show/Hide the Full List
mod site chr6:28905027-28905028:- [3]
Sequence CCCAGCTACTTGGGTGTCTTAGGCGGGAGAATCACCTGAGC
Transcript ID List rmsk_1903183; ENST00000414543.5; ENST00000377194.7; ENST00000467742.1; ENST00000481474.5; ENST00000377199.4
External Link RMBase: RNA-editing_site_115246
mod ID: A2ISITE001381 Click to Show/Hide the Full List
mod site chr6:28905052-28905053:- [3]
Sequence TAGGGTGGTAGTGCACACCTATGGTCCCAGCTACTTGGGTG
Transcript ID List ENST00000377199.4; rmsk_1903183; ENST00000414543.5; ENST00000481474.5; ENST00000467742.1; ENST00000377194.7
External Link RMBase: RNA-editing_site_115247
mod ID: A2ISITE001382 Click to Show/Hide the Full List
mod site chr6:28905063-28905064:- [3]
Sequence TTTTTTAAAATTAGGGTGGTAGTGCACACCTATGGTCCCAG
Transcript ID List ENST00000467742.1; rmsk_1903183; ENST00000377194.7; ENST00000414543.5; ENST00000377199.4; ENST00000481474.5
External Link RMBase: RNA-editing_site_115248
mod ID: A2ISITE001383 Click to Show/Hide the Full List
mod site chr6:28905086-28905087:- [3]
Sequence TAAGACCTCATCTCTACAAAAAATTTTTTAAAATTAGGGTG
Transcript ID List ENST00000467742.1; ENST00000377194.7; ENST00000481474.5; ENST00000377199.4; rmsk_1903183; ENST00000414543.5
External Link RMBase: RNA-editing_site_115249
mod ID: A2ISITE001384 Click to Show/Hide the Full List
mod site chr6:28906016-28906017:- [3]
Sequence TTTTGTAGAGACAGGGTCTCAAACTCCTGTATGCAAGCAAT
Transcript ID List ENST00000414543.5; ENST00000467742.1; ENST00000377194.7; ENST00000481474.5; ENST00000377199.4
External Link RMBase: RNA-editing_site_115250
mod ID: A2ISITE001385 Click to Show/Hide the Full List
mod site chr6:28909283-28909284:- [3]
Sequence AGAAACCCCATCTCTACTAAAAACACAAAATTAGCTGGGTA
Transcript ID List rmsk_1903190; ENST00000481474.5; ENST00000377199.4; ENST00000377194.7
External Link RMBase: RNA-editing_site_115251
mod ID: A2ISITE001386 Click to Show/Hide the Full List
mod site chr6:28909284-28909285:- [3]
Sequence GAGAAACCCCATCTCTACTAAAAACACAAAATTAGCTGGGT
Transcript ID List rmsk_1903190; ENST00000481474.5; ENST00000377194.7; ENST00000377199.4
External Link RMBase: RNA-editing_site_115252
mod ID: A2ISITE001387 Click to Show/Hide the Full List
mod site chr6:28909285-28909286:- [3]
Sequence GGAGAAACCCCATCTCTACTAAAAACACAAAATTAGCTGGG
Transcript ID List ENST00000481474.5; ENST00000377194.7; rmsk_1903190; ENST00000377199.4
External Link RMBase: RNA-editing_site_115253
mod ID: A2ISITE001388 Click to Show/Hide the Full List
mod site chr6:28909288-28909289:- [3]
Sequence TATGGAGAAACCCCATCTCTACTAAAAACACAAAATTAGCT
Transcript ID List rmsk_1903190; ENST00000377199.4; ENST00000481474.5; ENST00000377194.7
External Link RMBase: RNA-editing_site_115254
mod ID: A2ISITE001389 Click to Show/Hide the Full List
mod site chr6:28912273-28912274:- [4]
Sequence GTGCTAAAAACACAAAAATTAGCTGGGCGTGATGGCAGACA
Transcript ID List ENST00000377194.7; ENST00000498117.1; rmsk_1903197; ENST00000377199.4; ENST00000481474.5
External Link RMBase: RNA-editing_site_115255
N1-methyladenosine (m1A)
In total 1 m6A sequence/site(s) in this target gene
mod ID: M1ASITE000103 Click to Show/Hide the Full List
mod site chr6:28923984-28923985:- [5]
Sequence CTCGCGCTGGGGTGGGGTTTACGCTGCCGCCGGCATCCGCT
Cell/Tissue List HEK293T
Seq Type List m1A-MAP-seq
Transcript ID List ENST00000377194.7; ENST00000377199.4
External Link RMBase: m1A_site_889
5-methylcytidine (m5C)
In total 3 m6A sequence/site(s) in this target gene
mod ID: M5CSITE003798 Click to Show/Hide the Full List
mod site chr6:28909225-28909226:-
Sequence AATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000481474.5; rmsk_1903190; ENST00000377194.7; ENST00000377199.4
External Link RMBase: m5C_site_37271
mod ID: M5CSITE003799 Click to Show/Hide the Full List
mod site chr6:28909241-28909242:-
Sequence GGTGGCGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000377199.4; ENST00000377194.7; ENST00000481474.5; rmsk_1903190
External Link RMBase: m5C_site_37272
mod ID: M5CSITE003800 Click to Show/Hide the Full List
mod site chr6:28923668-28923669:- [6]
Sequence CTCAGTGCAGAGCTCGGCGCCGGGGCCCATGCCCGTGCGCC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000377194.7; ENST00000377199.4; ENST00000481474.5
External Link RMBase: m5C_site_37273
N6-methyladenosine (m6A)
In total 29 m6A sequence/site(s) in this target gene
mod ID: M6ASITE074249 Click to Show/Hide the Full List
mod site chr6:28903042-28903043:- [7]
Sequence AGTCCTGCTTCTCTGTGGGTACGTGCCCCTCTGTTTAAAAA
Motif Score 2.830077381
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000377199.4; ENST00000414543.5; ENST00000481474.5; ENST00000377194.7
External Link RMBase: m6A_site_711226
mod ID: M6ASITE074250 Click to Show/Hide the Full List
mod site chr6:28903091-28903092:- [7]
Sequence TCAGAAGGCTGGGGCAGATCACTTCAAGCAAGCCCCCATGA
Motif Score 2.469291667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000481474.5; ENST00000377199.4; ENST00000414543.5; ENST00000377194.7
External Link RMBase: m6A_site_711227
mod ID: M6ASITE074251 Click to Show/Hide the Full List
mod site chr6:28903122-28903123:- [8]
Sequence CATGGCCATTGGATCATGAGACACTCTGAAGTCAGAAGGCT
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000377199.4; ENST00000481474.5; ENST00000414543.5; ENST00000377194.7
External Link RMBase: m6A_site_711228
mod ID: M6ASITE074252 Click to Show/Hide the Full List
mod site chr6:28903183-28903184:- [7]
Sequence TTTGGGGGAAGGGGGAATTGACCATGCTTAAGTGCATCCTA
Motif Score 2.839113095
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000414543.5; ENST00000377194.7; ENST00000481474.5; ENST00000377199.4
External Link RMBase: m6A_site_711229
mod ID: M6ASITE074253 Click to Show/Hide the Full List
mod site chr6:28903230-28903231:- [7]
Sequence AATATTCCAGGGATTCATTGACTTCTTGGCTCCTTTTCTCC
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000377199.4; ENST00000377194.7; ENST00000481474.5; ENST00000414543.5
External Link RMBase: m6A_site_711230
mod ID: M6ASITE074254 Click to Show/Hide the Full List
mod site chr6:28903252-28903253:- [8]
Sequence ATCCCTGGAAGGATTCTGGGACAATATTCCAGGGATTCATT
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000414543.5; ENST00000377199.4; ENST00000377194.7; ENST00000481474.5
External Link RMBase: m6A_site_711231
mod ID: M6ASITE074255 Click to Show/Hide the Full List
mod site chr6:28903303-28903304:- [8]
Sequence TACTAGATCCCTTACCAGTCACATTTGTGGACTGGTGGCCA
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000414543.5; ENST00000377194.7; ENST00000481474.5; ENST00000377199.4
External Link RMBase: m6A_site_711232
mod ID: M6ASITE074256 Click to Show/Hide the Full List
mod site chr6:28903322-28903323:- [7]
Sequence GCCCAACTCCATCCTCTGTTACTAGATCCCTTACCAGTCAC
Motif Score 2.494845238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000414543.5; ENST00000377194.7; ENST00000481474.5; ENST00000377199.4
External Link RMBase: m6A_site_711233
mod ID: M6ASITE074257 Click to Show/Hide the Full List
mod site chr6:28903337-28903338:- [7]
Sequence CCAGGATAATATTCTGCCCAACTCCATCCTCTGTTACTAGA
Motif Score 2.595904762
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000481474.5; ENST00000414543.5; ENST00000377194.7; ENST00000377199.4
External Link RMBase: m6A_site_711234
mod ID: M6ASITE074258 Click to Show/Hide the Full List
mod site chr6:28903498-28903499:- [7]
Sequence TGGTTAGTTACAGTTATTTTACAATAATGGTGGGTAATGGC
Motif Score 2.07285119
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000414543.5; ENST00000481474.5; ENST00000377194.7; ENST00000377199.4
External Link RMBase: m6A_site_711235
mod ID: M6ASITE074259 Click to Show/Hide the Full List
mod site chr6:28903546-28903547:- [7]
Sequence AATGTGCCATAGTTTTATTAACTCCATTAAAGAAGCCTGTA
Motif Score 2.590089286
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000377199.4; ENST00000414543.5; ENST00000481474.5; ENST00000377194.7
External Link RMBase: m6A_site_711236
mod ID: M6ASITE074260 Click to Show/Hide the Full List
mod site chr6:28903654-28903655:- [8]
Sequence TGGGCTAGGGCTCCTTTCTAACAACCTAGACTGGAATAAGG
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000481474.5; ENST00000377199.4; ENST00000414543.5; ENST00000377194.7
External Link RMBase: m6A_site_711237
mod ID: M6ASITE074261 Click to Show/Hide the Full List
mod site chr6:28903706-28903707:- [8]
Sequence GCTTCCTCTGGTTCAGCCCCACATAATGATTATGGCTATTT
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000414543.5; ENST00000377194.7; ENST00000377199.4; ENST00000481474.5
External Link RMBase: m6A_site_711238
mod ID: M6ASITE074262 Click to Show/Hide the Full List
mod site chr6:28903812-28903813:- [8]
Sequence GTTTCATACTTTCTGGTTTTACACATCGCTGGAGGGATAAA
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000414543.5; ENST00000377199.4; ENST00000481474.5; ENST00000377194.7
External Link RMBase: m6A_site_711239
mod ID: M6ASITE074263 Click to Show/Hide the Full List
mod site chr6:28904178-28904179:- [7]
Sequence GCCCTACTTCAGTCTGAGTTACTCGGGAGGGAAAAGTGCAG
Motif Score 2.494845238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000481474.5; ENST00000414543.5; ENST00000377199.4; ENST00000377194.7
External Link RMBase: m6A_site_711240
mod ID: M6ASITE074264 Click to Show/Hide the Full List
mod site chr6:28904241-28904242:- [8]
Sequence CAACGTGACAGAGAGGTGTCACACCTTCACTTTCTCTCATG
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000377199.4; ENST00000481474.5; ENST00000377194.7; ENST00000414543.5
External Link RMBase: m6A_site_711241
mod ID: M6ASITE074265 Click to Show/Hide the Full List
mod site chr6:28904262-28904263:- [8]
Sequence TGCTGGTGAGGTCTCCTTCTACAACGTGACAGAGAGGTGTC
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000414543.5; ENST00000481474.5; ENST00000377199.4; ENST00000377194.7
External Link RMBase: m6A_site_711242
mod ID: M6ASITE074266 Click to Show/Hide the Full List
mod site chr6:28904289-28904290:- [9]
Sequence GCGGGTGGGGATTTTCTTGGACTATGATGCTGGTGAGGTCT
Motif Score 4.065041667
Cell/Tissue List CD8T; A549; AML
Seq Type List m6A-CLIP/IP; miCLIP
Transcript ID List ENST00000414543.5; ENST00000377194.7; ENST00000377199.4; ENST00000481474.5
External Link RMBase: m6A_site_711243
mod ID: M6ASITE074267 Click to Show/Hide the Full List
mod site chr6:28904320-28904321:- [9]
Sequence TGACTGCCCTACCCCTGCGGACCCCGCTCCAGCGGGTGGGG
Motif Score 3.622404762
Cell/Tissue List A549
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000481474.5; ENST00000377194.7; ENST00000377199.4; ENST00000414543.5
External Link RMBase: m6A_site_711244
mod ID: M6ASITE074268 Click to Show/Hide the Full List
mod site chr6:28904442-28904443:- [10]
Sequence GACCATAGGTGTCTGTGAAGACTCAGTGTGCAGAAAAGGTG
Motif Score 3.319380952
Cell/Tissue List AML
Seq Type List miCLIP
Transcript ID List ENST00000377199.4; ENST00000481474.5; ENST00000377194.7; ENST00000414543.5
External Link RMBase: m6A_site_711245
mod ID: M6ASITE074269 Click to Show/Hide the Full List
mod site chr6:28904461-28904462:- [9]
Sequence TGGGAGATAAAGCCAAGTGGACCATAGGTGTCTGTGAAGAC
Motif Score 3.622404762
Cell/Tissue List A549
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000377194.7; ENST00000377199.4; ENST00000481474.5; ENST00000414543.5
External Link RMBase: m6A_site_711246
mod ID: M6ASITE074270 Click to Show/Hide the Full List
mod site chr6:28904501-28904502:- [8]
Sequence CCATGCTTCATCGCCGGGAGACATTATTGGGAGGTAGAGGT
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000377199.4; ENST00000481474.5; ENST00000377194.7; ENST00000414543.5; ENST00000467742.1
External Link RMBase: m6A_site_711247
mod ID: M6ASITE074271 Click to Show/Hide the Full List
mod site chr6:28904565-28904566:- [8]
Sequence CCTCCAACAGGACCTGCCTGACAACCCCGAGAGGTTCAATC
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000481474.5; ENST00000377199.4; ENST00000467742.1; ENST00000414543.5; ENST00000377194.7
External Link RMBase: m6A_site_711248
mod ID: M6ASITE074272 Click to Show/Hide the Full List
mod site chr6:28904643-28904644:- [8]
Sequence GGACGTGACTCTGGACCCAGACACGGCCTACCCCAGCCTGA
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000377199.4; ENST00000481474.5; ENST00000414543.5; ENST00000377194.7; ENST00000467742.1
External Link RMBase: m6A_site_711249
mod ID: M6ASITE074273 Click to Show/Hide the Full List
mod site chr6:28909025-28909026:- [8]
Sequence AGATTTGCAAGAGAAAATCCACATTTTTGCCCAAAAATGTC
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000377199.4; ENST00000377194.7; ENST00000481474.5
External Link RMBase: m6A_site_711250
mod ID: M6ASITE074274 Click to Show/Hide the Full List
mod site chr6:28909053-28909054:- [8]
Sequence GGATTCCTGAACCTTGGATCACACCTCCAGATTTGCAAGAG
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000377194.7; ENST00000377199.4; ENST00000481474.5
External Link RMBase: m6A_site_711251
mod ID: M6ASITE074275 Click to Show/Hide the Full List
mod site chr6:28920123-28920124:- [8]
Sequence GGAGCTAGACTTGGCCATCTACAATAGCATCAATGGTGCCA
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000498117.1; ENST00000377194.7; ENST00000481474.5; ENST00000496091.1; ENST00000377199.4
External Link RMBase: m6A_site_711252
mod ID: M6ASITE074276 Click to Show/Hide the Full List
mod site chr6:28923441-28923442:- [8]
Sequence GGAGACCTTCCCGCAGAGGCACATGCGGCCCAACCGGCACC
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000377194.7; ENST00000481474.5; ENST00000377199.4
External Link RMBase: m6A_site_711253
mod ID: M6ASITE074277 Click to Show/Hide the Full List
mod site chr6:28923531-28923532:- [8]
Sequence GATGCTCGACTGCGGCCATAACATCTGTTGCGCGTGCCTCG
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000377194.7; ENST00000481474.5; ENST00000377199.4
External Link RMBase: m6A_site_711254