m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR00954)

Target Name	Glypican-4 (GPC4)
Synonyms	K-glypican Click to Show/Hide
Gene Name	GPC4
Chromosomal Location	Xq26.2
Family	Glypican family
Function	Cell surface proteoglycan that bears heparan sulfate. May be involved in the development of kidney tubules and of the central nervous system (By similarity). Click to Show/Hide
Gene ID	2239
Uniprot ID	GPC4_HUMAN
HGNC ID	HGNC:4452
KEGG ID	hsa:2239

RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00954)

Glypican-4 (GPC4)

N6-methyladenosine (m6A)

In total 46 m6A sequence/site(s) in this target gene
mod ID: M6ASITE093433		Click to Show/Hide the Full List
mod site	chrX:133301155-133301156:-		[2]
Sequence	TACATTTCATTCAACTTTTTACACCAAATTCTGCAGAGTGG
Motif Score	2.07285119
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873378
mod ID: M6ASITE093434		Click to Show/Hide the Full List
mod site	chrX:133301174-133301175:-		[3]
Sequence	TACTTGATAGCTCAGGGTCTACATTTCATTCAACTTTTTAC
Motif Score	2.078666667
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873379
mod ID: M6ASITE093435		Click to Show/Hide the Full List
mod site	chrX:133301193-133301194:-		[3]
Sequence	TTTTATATTGAAACATAATTACTTGATAGCTCAGGGTCTAC
Motif Score	2.494845238
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873380
mod ID: M6ASITE093436		Click to Show/Hide the Full List
mod site	chrX:133301201-133301202:-		[3]
Sequence	TTCTCTATTTTTATATTGAAACATAATTACTTGATAGCTCA
Motif Score	2.20572619
Cell/Tissue List	HEK293T; hESC-HEK293T
Seq Type List	DART-seq; MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873381
mod ID: M6ASITE093437		Click to Show/Hide the Full List
mod site	chrX:133301269-133301270:-		[3]
Sequence	TTTTACCGAACCTAAAACCCACAAAGAGGTTGTTTGTGTTA
Motif Score	2.053113095
Cell/Tissue List	HEK293T; hESC-HEK293T
Seq Type List	DART-seq; MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873382
mod ID: M6ASITE093438		Click to Show/Hide the Full List
mod site	chrX:133301285-133301286:-		[3]
Sequence	TTAAGATCCCAACTAATTTTACCGAACCTAAAACCCACAAA
Motif Score	2.052208333
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873383
mod ID: M6ASITE093439		Click to Show/Hide the Full List
mod site	chrX:133301374-133301375:-		[3]
Sequence	CTCTGATAATGTAACAAATCACTTTCAAAGGAGTTCCCAGA
Motif Score	2.469291667
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873384
mod ID: M6ASITE093440		Click to Show/Hide the Full List
mod site	chrX:133301381-133301382:-		[3]
Sequence	CATAAAACTCTGATAATGTAACAAATCACTTTCAAAGGAGT
Motif Score	2.168095238
Cell/Tissue List	HEK293T; hESC-HEK293T
Seq Type List	DART-seq; MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873385
mod ID: M6ASITE093441		Click to Show/Hide the Full List
mod site	chrX:133301449-133301450:-		[2]
Sequence	TTGTCCCAGGCCAAAGACTAACAACTGCCTTGGGAATCCCT
Motif Score	2.168095238
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873386
mod ID: M6ASITE093442		Click to Show/Hide the Full List
mod site	chrX:133301453-133301454:-		[3]
Sequence	TCTGTTGTCCCAGGCCAAAGACTAACAACTGCCTTGGGAAT
Motif Score	3.319380952
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873387
mod ID: M6ASITE093443		Click to Show/Hide the Full List
mod site	chrX:133301529-133301530:-		[2]
Sequence	TAGGTAGAGCTGAGAATACTACATCTTAGTGGTGACCTTTA
Motif Score	2.078666667
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873388
mod ID: M6ASITE093444		Click to Show/Hide the Full List
mod site	chrX:133301608-133301609:-		[3]
Sequence	AGGAGCCCACTTAGGGGAGAACTAGGTGTCCAGATTTTTGT
Motif Score	3.373380952
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873389
mod ID: M6ASITE093445		Click to Show/Hide the Full List
mod site	chrX:133301675-133301676:-		[3]
Sequence	TCTTATCAGTAAAACAAAGGACTTGCCATGGTTCACAGCAA
Motif Score	4.065041667
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873390
mod ID: M6ASITE093446		Click to Show/Hide the Full List
mod site	chrX:133301682-133301683:-		[2]
Sequence	AGCCCCCTCTTATCAGTAAAACAAAGGACTTGCCATGGTTC
Motif Score	2.20572619
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873391
mod ID: M6ASITE093447		Click to Show/Hide the Full List
mod site	chrX:133301811-133301812:-		[2]
Sequence	GGCTCAGGGAATAGCTGTCAACACTCGGGCAAAGTTTTTGT
Motif Score	2.173910714
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873392
mod ID: M6ASITE093448		Click to Show/Hide the Full List
mod site	chrX:133302022-133302023:-		[2]
Sequence	TTCAGGATGTCCCAGTTATCACATGTTCACACTTGGGTTTA
Motif Score	2.047297619
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873393
mod ID: M6ASITE093449		Click to Show/Hide the Full List
mod site	chrX:133302151-133302152:-		[2]
Sequence	TGCTTTGAATGAGTTGAATTACATAAGCTAAGATCACTATA
Motif Score	2.07285119
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873394
mod ID: M6ASITE093450		Click to Show/Hide the Full List
mod site	chrX:133302176-133302177:-		[3]
Sequence	ATAGTTGGAAGAGACTGCAGACTACTGCTTTGAATGAGTTG
Motif Score	3.319380952
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873395
mod ID: M6ASITE093451		Click to Show/Hide the Full List
mod site	chrX:133302280-133302281:-		[2]
Sequence	TTAAGACAGAATGTGAGGGCACAAGCAGGCTTCTGAGCCAC
Motif Score	2.830589286
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873396
mod ID: M6ASITE093452		Click to Show/Hide the Full List
mod site	chrX:133302295-133302296:-		[3]
Sequence	TTTTTTAAATTATTATTAAGACAGAATGTGAGGGCACAAGC
Motif Score	2.897386905
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873397
mod ID: M6ASITE093453		Click to Show/Hide the Full List
mod site	chrX:133302439-133302440:-		[4]
Sequence	CTGAAATATTAAATAGCTGTACAGAAGCAGGTTTTATTTAT
Motif Score	2.856142857
Cell/Tissue List	kidney
Seq Type List	m6A-REF-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873398
mod ID: M6ASITE093454		Click to Show/Hide the Full List
mod site	chrX:133302505-133302506:-		[3]
Sequence	GTGATCTCGCCTTGTTTCTTACAAGCAAACCAGGGTCCCTT
Motif Score	2.07285119
Cell/Tissue List	HEK293T; hESC-HEK293T
Seq Type List	DART-seq; MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873399
mod ID: M6ASITE093455		Click to Show/Hide the Full List
mod site	chrX:133302617-133302618:-		[5]
Sequence	GCTAACAGTGTAGGTACAGAACTATAGTTAGTTGTGCATTT
Motif Score	3.373380952
Cell/Tissue List	HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873400
mod ID: M6ASITE093456		Click to Show/Hide the Full List
mod site	chrX:133302622-133302623:-		[3]
Sequence	ACGTGGCTAACAGTGTAGGTACAGAACTATAGTTAGTTGTG
Motif Score	2.856142857
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873401
mod ID: M6ASITE093457		Click to Show/Hide the Full List
mod site	chrX:133302652-133302653:-		[6]
Sequence	GTTGGTTCCTGCTCCCCCAAACCATGTTAAACGTGGCTAAC
Motif Score	2.185083333
Cell/Tissue List	HEK293T; HEK293A-TOA
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873402
mod ID: M6ASITE093458		Click to Show/Hide the Full List
mod site	chrX:133302684-133302685:-		[6]
Sequence	CAGTTTTGGGAGGAAAAGGGACTGTGCATTGAGTTGGTTCC
Motif Score	4.065041667
Cell/Tissue List	HEK293T; hESCs; fibroblasts; HEK293A-TOA; iSLK
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873403
mod ID: M6ASITE093459		Click to Show/Hide the Full List
mod site	chrX:133302720-133302721:-		[3]
Sequence	CACTGGTTTAAGAAGTGCTGACTTTGTTTTCTCATTCAGTT
Motif Score	3.28175
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873404
mod ID: M6ASITE093460		Click to Show/Hide the Full List
mod site	chrX:133302750-133302751:-		[3]
Sequence	GACAACAATGTACAGTTTTTACTATGTGGCCACTGGTTTAA
Motif Score	2.494845238
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873405
mod ID: M6ASITE093461		Click to Show/Hide the Full List
mod site	chrX:133302769-133302770:-		[6]
Sequence	TTTGCTTTTTAAATGAATGGACAACAATGTACAGTTTTTAC
Motif Score	3.643047619
Cell/Tissue List	HEK293T; hNPCs; hESCs; fibroblasts; HEK293A-TOA; iSLK
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873406
mod ID: M6ASITE093462		Click to Show/Hide the Full List
mod site	chrX:133302858-133302859:-		[6]
Sequence	AGAGTGGAGATAATTCTCAAACTCTGAGAAAAAGTGTTCAT
Motif Score	2.627720238
Cell/Tissue List	HEK293T; HEK293A-TOA
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873407
mod ID: M6ASITE093463		Click to Show/Hide the Full List
mod site	chrX:133302999-133303000:-		[2]
Sequence	GTGCCCTTCAGAGTTTGACTACAATGCCACTGACCATGCTG
Motif Score	2.078666667
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873408
mod ID: M6ASITE093464		Click to Show/Hide the Full List
mod site	chrX:133303197-133303198:-		[2]
Sequence	CAGCAAGATGAAGAATGCATACAATGGGAACGACGTGGACT
Motif Score	2.110482143
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873409
mod ID: M6ASITE093465		Click to Show/Hide the Full List
mod site	chrX:133303260-133303261:-		[2]
Sequence	GGTTGACACCAGCAAACCAGACATACTGATCCTTCGTCAAA
Motif Score	2.897386905
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873410
mod ID: M6ASITE093466		Click to Show/Hide the Full List
mod site	chrX:133305825-133305826:-		[2]
Sequence	TTCAGTGCTCGCTTCAGACCACATCACCCCGAGGAACGCCC
Motif Score	2.053113095
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873411
mod ID: M6ASITE093467		Click to Show/Hide the Full List
mod site	chrX:133306057-133306058:-		[2]
Sequence	GATTTCTGATGCTATTATGAACATGCAGGATAATAGTGTTC
Motif Score	2.951386905
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873412
mod ID: M6ASITE093468		Click to Show/Hide the Full List
mod site	chrX:133306111-133306112:-		[2]
Sequence	GAGGCTAGAGGGTCCTTTCAACATTGAATCGGTCATGGATC
Motif Score	2.173910714
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873413
mod ID: M6ASITE093469		Click to Show/Hide the Full List
mod site	chrX:133311268-133311269:-		[2]
Sequence	GGATCTCGATTTTGAATGGAACAATTTCATAGGTGAGCAAG
Motif Score	2.951386905
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873414
mod ID: M6ASITE093470		Click to Show/Hide the Full List
mod site	chrX:133311319-133311320:-		[2]
Sequence	ATGTTACAACTACTGCTCAAACATCATGAGAGGCTGTTTGG
Motif Score	2.20572619
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873415
mod ID: M6ASITE093471		Click to Show/Hide the Full List
mod site	chrX:133311334-133311335:-		[2]
Sequence	CGTGACTGTGAAGCCATGTTACAACTACTGCTCAAACATCA
Motif Score	2.07285119
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873416
mod ID: M6ASITE093472		Click to Show/Hide the Full List
mod site	chrX:133324460-133324461:-		[2]
Sequence	GAAGACATATGGCCATTTATACATGCAAAATTCTGAGCTAT
Motif Score	2.110482143
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873417
mod ID: M6ASITE093473		Click to Show/Hide the Full List
mod site	chrX:133324476-133324477:-		[2]
Sequence	TGAATGATATGTTTGTGAAGACATATGGCCATTTATACATG
Motif Score	2.897386905
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873418
mod ID: M6ASITE093474		Click to Show/Hide the Full List
mod site	chrX:133339196-133339197:-		[2]
Sequence	AGCTGTCTTTGCTTCACGTTACAAGAAGTTTGATGGTATGT
Motif Score	2.07285119
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873419
mod ID: M6ASITE093475		Click to Show/Hide the Full List
mod site	chrX:133414837-133414838:-		[2]
Sequence	TTACGTGTCCAAAGGCTTCAACAAGAACGATGCCCCCCTCC
Motif Score	2.173910714
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873420
mod ID: M6ASITE093476		Click to Show/Hide the Full List
mod site	chrX:133415162-133415163:-		[7]
Sequence	CCCGGCGCCTGGCACCGGGGACCGTTGCCTGACGCGAGGCC
Motif Score	3.622404762
Cell/Tissue List	U2OS; H1A; CD4T; HEK293T; iSLK
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873421
mod ID: M6ASITE093477		Click to Show/Hide the Full List
mod site	chrX:133415255-133415256:-		[7]
Sequence	CGGGTTCGCTGCCCCGCGAAACCCCGAGGTCACCAGCCCGC
Motif Score	2.185083333
Cell/Tissue List	U2OS; H1A; CD4T; GSC-11; HEK293T; iSLK; GSCs; MM6
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873422
mod ID: M6ASITE093478		Click to Show/Hide the Full List
mod site	chrX:133415404-133415405:-		[7]
Sequence	GAGTCCAGCCGGACGAGCGGACCAGCGCAGGGCAGCCCAAG
Motif Score	3.622404762
Cell/Tissue List	U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; CD4T; GSC-11; HEK293T; HEK293A-TOA; iSLK
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000370828.4
External Link	RMBase: m6A_site_873423

Ref 1	Polyamines and the NMDA receptor: modifying intrinsic activities with aromatic substituents. Bioorg Med Chem Lett. 2006 Jun 1;16(11):2837-41. doi: 10.1016/j.bmcl.2006.03.015. Epub 2006 Mar 24.
Ref 2	Deciphering the "m(6)A Code" via Antibody-Independent Quantitative Profiling. Cell. 2019 Jul 25;178(3):731-747.e16. doi: 10.1016/j.cell.2019.06.013. Epub 2019 Jun 27.
Ref 3	DART-seq: an antibody-free method for global m(6)A detection. Nat Methods. 2019 Dec;16(12):1275-1280. doi: 10.1038/s41592-019-0570-0. Epub 2019 Sep 23.
Ref 4	Single-base mapping of m(6)A by an antibody-independent method. Sci Adv. 2019 Jul 3;5(7):eaax0250. doi: 10.1126/sciadv.aax0250. eCollection 2019 Jul.
Ref 5	The U6 snRNA m(6)A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention. Cell. 2017 May 18;169(5):824-835.e14. doi: 10.1016/j.cell.2017.05.003.
Ref 6	Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell. 2012 Jun 22;149(7):1635-46. doi: 10.1016/j.cell.2012.05.003. Epub 2012 May 17.
Ref 7	RNA-methylation-dependent RNA processing controls the speed of the circadian clock. Cell. 2013 Nov 7;155(4):793-806. doi: 10.1016/j.cell.2013.10.026.

m6A Target Gene Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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