m6A Target Gene Information

General Information of the m6A Target Gene (ID: M6ATAR00879)
Target Name Neurosecretory protein VGF [Cleaved into: Neuroendocrine regulatory peptide-1 (VGF)
Synonyms
NERP-1; NERP-2
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Gene Name VGF
Chromosomal Location 7q22.1
Function
Secreted polyprotein that is packaged and proteolytically processed by prohormone convertases PCSK1 and PCSK2 in a cell-type-specific manner (By similarity). VGF and peptides derived from its processing play many roles in neurogenesis and neuroplasticity associated with learning, memory, depression and chronic pain (By similarity).
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Gene ID 7425
Uniprot ID
VGF_HUMAN
HGNC ID
HGNC:12684
KEGG ID
hsa:7425
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00879)
Neurosecretory protein VGF [Cleaved into: Neuroendocrine regulatory peptide-1 (VGF)
5-methylcytidine (m5C)
In total 4 m6A sequence/site(s) in this target gene
mod ID: M5CSITE004206 Click to Show/Hide the Full List
mod site chr7:101163399-101163400:-
Sequence AGGTGGAGGAGAAGCGGAAGCGGAAGAAGAACGCCCCTCCC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000611537.1; ENST00000249330.3; ENST00000445482.2
External Link RMBase: m5C_site_40197
mod ID: M5CSITE004207 Click to Show/Hide the Full List
mod site chr7:101163464-101163465:-
Sequence CAGCCTCATTGAGCTGTCCACCAAACTCCACCTGCCAGCGG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000249330.3; ENST00000445482.2; ENST00000611537.1
External Link RMBase: m5C_site_40198
mod ID: M5CSITE004208 Click to Show/Hide the Full List
mod site chr7:101164166-101164167:-
Sequence GCGCGCGCCCCTGCCGCCCCCGGCCCCCTCTCAATTCCAGG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000249330.3; ENST00000611537.1; ENST00000445482.2
External Link RMBase: m5C_site_40199
mod ID: M5CSITE004209 Click to Show/Hide the Full List
mod site chr7:101164254-101164255:-
Sequence ACACGCTGACCCGAGTGAATCTGGAGAGCCCGGGGCCAGAG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000445482.2; ENST00000249330.3; ENST00000611537.1
External Link RMBase: m5C_site_40200
N6-methyladenosine (m6A)
In total 18 m6A sequence/site(s) in this target gene
mod ID: M6ASITE081564 Click to Show/Hide the Full List
mod site chr7:101162693-101162694:- [2]
Sequence TGGGGACGTCCCCGTCGGAAACCGGAAAAAGCAGTTCCAGT
Motif Score 2.185083333
Cell/Tissue List HeLa; HepG2
Seq Type List m6A-seq
Transcript ID List ENST00000249330.3; ENST00000445482.2; ENST00000611537.1
External Link RMBase: m6A_site_770063
mod ID: M6ASITE081565 Click to Show/Hide the Full List
mod site chr7:101162816-101162817:- [2]
Sequence CTCCCGGGTCCTGAGCCCGAACTCCCAGAGCTCACCCGCGG
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2
Seq Type List m6A-seq
Transcript ID List ENST00000611537.1; ENST00000445482.2; ENST00000249330.3
External Link RMBase: m6A_site_770064
mod ID: M6ASITE081566 Click to Show/Hide the Full List
mod site chr7:101162842-101162843:- [2]
Sequence GCTGCGTCGGGACCTGCCAGACCCCCCTCCCGGGTCCTGAG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; H1299
Seq Type List m6A-seq
Transcript ID List ENST00000445482.2; ENST00000249330.3; ENST00000611537.1
External Link RMBase: m6A_site_770065
mod ID: M6ASITE081567 Click to Show/Hide the Full List
mod site chr7:101162851-101162852:- [2]
Sequence TGTCCCCGGGCTGCGTCGGGACCTGCCAGACCCCCCTCCCG
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; H1299
Seq Type List m6A-seq
Transcript ID List ENST00000249330.3; ENST00000611537.1; ENST00000445482.2
External Link RMBase: m6A_site_770066
mod ID: M6ASITE081568 Click to Show/Hide the Full List
mod site chr7:101163183-101163184:- [2]
Sequence CCAACTACATCCGGCCGCGGACACTGCAGCCGCCCTCGGCC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hESCs; fibroblasts; GM12878; H1299; GSC-11; HEK293A-TOA; iSLK; MSC; TREX; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000445482.2; ENST00000249330.3; ENST00000611537.1
External Link RMBase: m6A_site_770067
mod ID: M6ASITE081569 Click to Show/Hide the Full List
mod site chr7:101163278-101163279:- [2]
Sequence CGCACGAGACGAGCTGCCGGACTGGAACGAGGTGCTCCCGC
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; H1299; GSC-11; HEK293A-TOA; iSLK; MSC; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000249330.3; ENST00000611537.1; ENST00000445482.2
External Link RMBase: m6A_site_770068
mod ID: M6ASITE081570 Click to Show/Hide the Full List
mod site chr7:101163460-101163461:- [2]
Sequence CTCATTGAGCTGTCCACCAAACTCCACCTGCCAGCGGACGA
Motif Score 2.627720238
Cell/Tissue List HeLa; HepG2; A549; U2OS; H1A; H1B; hESCs; fibroblasts; H1299; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; endometrial; HEC-1-A; GSCs; NB4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000249330.3; ENST00000445482.2; ENST00000611537.1
External Link RMBase: m6A_site_770069
mod ID: M6ASITE081571 Click to Show/Hide the Full List
mod site chr7:101163540-101163541:- [2]
Sequence GGCGGAAGGAGGCCGAGGGGACAGAGGAGGGCGGGGAGGAG
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; A549; U2OS; H1A; H1B; hNPCs; hESCs; HEK293T; fibroblasts; H1299; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000249330.3; ENST00000445482.2; ENST00000611537.1
External Link RMBase: m6A_site_770070
mod ID: M6ASITE081572 Click to Show/Hide the Full List
mod site chr7:101163593-101163594:- [2]
Sequence CGGGGAAGCCGGCGCCGAGGACAAGCGCTCCCAGGAGGAGA
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; A549; U2OS; H1A; H1B; hNPCs; hESCs; HEK293T; fibroblasts; H1299; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TREX; endometrial; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000249330.3; ENST00000445482.2; ENST00000611537.1
External Link RMBase: m6A_site_770071
mod ID: M6ASITE081573 Click to Show/Hide the Full List
mod site chr7:101163854-101163855:- [2]
Sequence GCTGGCCGACCTCGCCTCGGACCTGCTGCTCCAGTATTTGC
Motif Score 3.622404762
Cell/Tissue List HeLa; U2OS; H1299; GSC-11; HEK293A-TOA; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000445482.2; ENST00000249330.3; ENST00000611537.1
External Link RMBase: m6A_site_770072
mod ID: M6ASITE081574 Click to Show/Hide the Full List
mod site chr7:101164077-101164078:- [3]
Sequence AAGGAGTGTCCTCCCCCAAAACACACCTAGGCGAGGCATTG
Motif Score 2.20572619
Cell/Tissue List HepG2; U2OS; H1299; GSC-11; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000611537.1; ENST00000445482.2; ENST00000249330.3
External Link RMBase: m6A_site_770073
mod ID: M6ASITE081575 Click to Show/Hide the Full List
mod site chr7:101164113-101164114:- [3]
Sequence ACAGCGGGCCCCTTCCCGAAACCCACAAGTTCGGGGAAGGA
Motif Score 2.185083333
Cell/Tissue List HepG2; U2OS; H1299; GSC-11; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000445482.2; ENST00000611537.1; ENST00000249330.3
External Link RMBase: m6A_site_770074
mod ID: M6ASITE081576 Click to Show/Hide the Full List
mod site chr7:101164284-101164285:- [2]
Sequence CGGCGGCAGCAGAGACGGAAACCCGCACGCACACGCTGACC
Motif Score 2.185083333
Cell/Tissue List HeLa; HepG2; U2OS; H1A; H1B; fibroblasts; A549; H1299; GSC-11; HEK293A-TOA; iSLK; MSC; endometrial; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000249330.3; ENST00000445482.2; ENST00000611537.1
External Link RMBase: m6A_site_770075
mod ID: M6ASITE081577 Click to Show/Hide the Full List
mod site chr7:101164348-101164349:- [2]
Sequence CTAGCGTCCCTGCTCCAGGAACTGCGAGATTTCAGTCCAAG
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; U2OS; H1A; H1B; hESCs; fibroblasts; A549; H1299; GSC-11; HEK293A-TOA; iSLK; MSC; endometrial; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000611537.1; ENST00000249330.3; ENST00000445482.2
External Link RMBase: m6A_site_770076
mod ID: M6ASITE081578 Click to Show/Hide the Full List
mod site chr7:101164419-101164420:- [2]
Sequence CGGCTCCGCCTCGCCCTCAGACTCCGGAGAATGGGCCCGAG
Motif Score 3.319380952
Cell/Tissue List HeLa; HepG2; HEK293T; U2OS; H1A; H1B; fibroblasts; A549; H1299; GSC-11; HEK293A-TOA; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000445482.2; ENST00000611537.1; ENST00000249330.3
External Link RMBase: m6A_site_770077
mod ID: M6ASITE081579 Click to Show/Hide the Full List
mod site chr7:101164476-101164477:- [2]
Sequence CCGAGACCGTGCGCAGCCAGACCCACAGCCTCCCGGCGCCG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; U2OS; H1299; GSC-11; HEK293A-TOA; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000249330.3; ENST00000611537.1; ENST00000445482.2
External Link RMBase: m6A_site_770078
mod ID: M6ASITE081580 Click to Show/Hide the Full List
mod site chr7:101164491-101164492:- [2]
Sequence CTGAAGCTCTGCTGACCGAGACCGTGCGCAGCCAGACCCAC
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; U2OS; H1299; GSC-11; HEK293A-TOA; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000611537.1; ENST00000445482.2; ENST00000249330.3
External Link RMBase: m6A_site_770079
mod ID: M6ASITE081581 Click to Show/Hide the Full List
mod site chr7:101165493-101165494:- [3]
Sequence CCCAGCCCACGGGACGCCAGACCTCGACCGTCGCTCCTACC
Motif Score 2.876744048
Cell/Tissue List HepG2; A549; H1299; GSC-11; HEK293A-TOA; MSC; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000611537.1; ENST00000249330.3
External Link RMBase: m6A_site_770080