m6A Target Gene Information
General Information of the m6A Target Gene (ID: M6ATAR00504)
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
EPHB3
can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
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YTH domain-containing family protein 2 (YTHDF2) [READER]
| Representative RNA-seq result indicating the expression of this target gene regulated by YTHDF2 | ||
| Cell Line | Mouse-cerebellum granule cell | Mus musculus |
|
Treatment: YTHDF2 knockdown mouse-cerebellum granule cell
Control: Wild type mouse-cerebellum granule cell
|
GSE153688 | |
| Regulation |
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logFC: -6.25E-01 p-value: 1.90E-03 |
| More Results | Click to View More RNA-seq Results | |
| Representative RIP-seq result supporting the interaction between EPHB3 and the regulator | ||
| Cell Line | Hela | Homo sapiens |
| Regulation | logFC: 1.21E+00 | GSE49339 |
| In total 1 item(s) under this regulator | ||||
| Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene | [1] | |||
| Response Summary | YTHDF2 enhanced TMZ resistance in GBM by activation of the PI3K/Akt and NF-Kappa-B signalling pathways via inhibition of Ephrin type-B receptor 3 (EPHB3) and TNFAIP3. | |||
| Target Regulation | Down regulation | |||
| Responsed Disease | Glioblastoma | ICD-11: 2A00.00 | ||
| Responsed Drug | Temozolomide | Approved | ||
| Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
| Cell Process | RNA stability | |||
| In-vitro Model | T98G | Glioblastoma | Homo sapiens | CVCL_0556 |
| LN-229 | Glioblastoma | Homo sapiens | CVCL_0393 | |
| In-vivo Model | 5 × 106 infected T98G cells (LV-NC or LV-YTHDF2) were injected into the flanks of mice through subcutaneous. | |||
Brain cancer [ICD-11: 2A00]
| In total 1 item(s) under this disease | ||||
| Experiment 1 Reporting the m6A-centered Disease Response | [1] | |||
| Response Summary | YTHDF2 enhanced TMZ resistance in GBM by activation of the PI3K/Akt and NF-Kappa-B signalling pathways via inhibition of Ephrin type-B receptor 3 (EPHB3) and TNFAIP3. | |||
| Responsed Disease | Glioblastoma [ICD-11: 2A00.00] | |||
| Target Regulator | YTH domain-containing family protein 2 (YTHDF2) | READER | ||
| Target Regulation | Down regulation | |||
| Responsed Drug | Temozolomide | Approved | ||
| Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
| Cell Process | RNA stability | |||
| In-vitro Model | T98G | Glioblastoma | Homo sapiens | CVCL_0556 |
| LN-229 | Glioblastoma | Homo sapiens | CVCL_0393 | |
| In-vivo Model | 5 × 106 infected T98G cells (LV-NC or LV-YTHDF2) were injected into the flanks of mice through subcutaneous. | |||
Temozolomide
[Approved]
| In total 1 item(s) under this drug | ||||
| Experiment 1 Reporting the m6A-centered Drug Response | [1] | |||
| Response Summary | YTHDF2 enhanced TMZ resistance in GBM by activation of the PI3K/Akt and NF-Kappa-B signalling pathways via inhibition of Ephrin type-B receptor 3 (EPHB3) and TNFAIP3. | |||
| Target Regulator | YTH domain-containing family protein 2 (YTHDF2) | READER | ||
| Target Regulation | Down regulation | |||
| Responsed Disease | Glioblastoma | ICD-11: 2A00.00 | ||
| Pathway Response | PI3K-Akt signaling pathway | hsa04151 | ||
| Cell Process | RNA stability | |||
| In-vitro Model | T98G | Glioblastoma | Homo sapiens | CVCL_0556 |
| LN-229 | Glioblastoma | Homo sapiens | CVCL_0393 | |
| In-vivo Model | 5 × 106 infected T98G cells (LV-NC or LV-YTHDF2) were injected into the flanks of mice through subcutaneous. | |||
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00504)
| In total 1 m6A sequence/site(s) in this target gene | |||
| mod ID: A2ISITE000206 | Click to Show/Hide the Full List | ||
| mod site | chr3:184566473-184566474:+ | [2] | |
| Sequence | GAGGTGGCCCTGGGTGAGTTAGGCTCCCCACAACATGCATC | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: RNA-editing_site_101624 | ||
N6-methyladenosine (m6A)
| In total 31 m6A sequence/site(s) in this target gene | |||
| mod ID: M6ASITE063813 | Click to Show/Hide the Full List | ||
| mod site | chr3:184561828-184561829:+ | [3] | |
| Sequence | GCAGCAAGATCCCAGCTCGGACCCCGGACGGCGCGCGCCCC | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa; H1A; MM6; peripheral-blood; GSC-11; HEK293A-TOA; endometrial; HEC-1-A; GSCs | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621237 | ||
| mod ID: M6ASITE063814 | Click to Show/Hide the Full List | ||
| mod site | chr3:184561991-184561992:+ | [4] | |
| Sequence | GGCGCCCCGGATCCTCCTGGACCGGTCCGTCCAGATTCCCG | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | MM6; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621238 | ||
| mod ID: M6ASITE063815 | Click to Show/Hide the Full List | ||
| mod site | chr3:184562016-184562017:+ | [4] | |
| Sequence | TCCGTCCAGATTCCCGCGGGACCGACCTGTCCGCATCCCCA | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | MM6; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621239 | ||
| mod ID: M6ASITE063816 | Click to Show/Hide the Full List | ||
| mod site | chr3:184562039-184562040:+ | [5] | |
| Sequence | GACCTGTCCGCATCCCCAGGACCGCCGGGCTCGGTGCACCG | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | peripheral-blood; GSC-11; endometrial; GSCs | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621240 | ||
| mod ID: M6ASITE063817 | Click to Show/Hide the Full List | ||
| mod site | chr3:184562118-184562119:+ | [6] | |
| Sequence | CCTCTCCTGGATCTCCTGGGACCCGACGCGAGCCTGCCCCG | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | GSC-11; endometrial; MM6 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621241 | ||
| mod ID: M6ASITE063818 | Click to Show/Hide the Full List | ||
| mod site | chr3:184572704-184572705:+ | [6] | |
| Sequence | TCCCCGGCTCCTGCAAGGAGACCTTCAACCTCTTCTACTAC | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | GSC-11; endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621242 | ||
| mod ID: M6ASITE063819 | Click to Show/Hide the Full List | ||
| mod site | chr3:184572774-184572775:+ | [6] | |
| Sequence | CTCCCCCTTCTGGATGGAGAACCCCTACGTGAAAGTGGACA | ||
| Motif Score | 2.930744048 | ||
| Cell/Tissue List | GSC-11; HEK293A-TOA; MSC; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621243 | ||
| mod ID: M6ASITE063820 | Click to Show/Hide the Full List | ||
| mod site | chr3:184572792-184572793:+ | [7] | |
| Sequence | GAACCCCTACGTGAAAGTGGACACCATTGCACCCGATGAGA | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | hESC-HEK293T; GSC-11; HEK293A-TOA; MSC; endometrial | ||
| Seq Type List | MAZTER-seq; m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621244 | ||
| mod ID: M6ASITE063821 | Click to Show/Hide the Full List | ||
| mod site | chr3:184572843-184572844:+ | [7] | |
| Sequence | GCTGGATGCCGGCCGTGTCAACACCAAGGTGCGCAGCTTTG | ||
| Motif Score | 2.173910714 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621245 | ||
| mod ID: M6ASITE063822 | Click to Show/Hide the Full List | ||
| mod site | chr3:184572903-184572904:+ | [5] | |
| Sequence | CTTCTACCTGGCCTTCCAGGACCAGGGCGCCTGCATGTCGC | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | peripheral-blood; GSC-11; endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621246 | ||
| mod ID: M6ASITE063823 | Click to Show/Hide the Full List | ||
| mod site | chr3:184579720-184579721:+ | [8] | |
| Sequence | GTGTGCCGTGGTCGACTGAAACAGCCTGGCCGCCGAGAGGT | ||
| Motif Score | 2.20572619 | ||
| Cell/Tissue List | endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621247 | ||
| mod ID: M6ASITE063824 | Click to Show/Hide the Full List | ||
| mod site | chr3:184579794-184579795:+ | [8] | |
| Sequence | CACCGAGAGGCAGCGGCGGGACTTCCTAAGCGAGGCCTCCA | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3; ENST00000473079.1 | ||
| External Link | RMBase: m6A_site_621248 | ||
| mod ID: M6ASITE063825 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581017-184581018:+ | [8] | |
| Sequence | CCGGCTGCCACCACCCATGGACTGTCCCACAGCACTGCACC | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621249 | ||
| mod ID: M6ASITE063826 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581050-184581051:+ | [8] | |
| Sequence | ACTGCACCAGCTCATGCTGGACTGCTGGGTGCGGGACCGGA | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621250 | ||
| mod ID: M6ASITE063827 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581065-184581066:+ | [8] | |
| Sequence | GCTGGACTGCTGGGTGCGGGACCGGAACCTCAGGCCCAAAT | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621251 | ||
| mod ID: M6ASITE063828 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581071-184581072:+ | [8] | |
| Sequence | CTGCTGGGTGCGGGACCGGAACCTCAGGCCCAAATTCTCCC | ||
| Motif Score | 2.930744048 | ||
| Cell/Tissue List | endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621252 | ||
| mod ID: M6ASITE063829 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581110-184581111:+ | [8] | |
| Sequence | CCAGATTGTCAATACCCTGGACAAGCTCATCCGCAATGCTG | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621253 | ||
| mod ID: M6ASITE063830 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581515-184581516:+ | [9] | |
| Sequence | ATTTGGCTCCACCTGCAGAGACCTGCTCCGTATTGGGGTCA | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | HeLa; GSC-11 | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621254 | ||
| mod ID: M6ASITE063831 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581578-184581579:+ | [9] | |
| Sequence | GATCCTGAGCAGTATCCAGGACATGCGGCTGCAGATGAACC | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | HeLa; HEK293T; H1B; H1A; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; endometrial; GSCs | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621255 | ||
| mod ID: M6ASITE063832 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581596-184581597:+ | [9] | |
| Sequence | GGACATGCGGCTGCAGATGAACCAGACGCTGCCTGTGCAGG | ||
| Motif Score | 2.930744048 | ||
| Cell/Tissue List | HeLa; HEK293T; H1B; H1A; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; endometrial; GSCs | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621256 | ||
| mod ID: M6ASITE063833 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581639-184581640:+ | [9] | |
| Sequence | TGACACCGGCTCCCACGGGGACCCTGAGGACCGTGCAGGGA | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa; HEK293T; HepG2; H1A; H1B; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621257 | ||
| mod ID: M6ASITE063834 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581648-184581649:+ | [9] | |
| Sequence | CTCCCACGGGGACCCTGAGGACCGTGCAGGGATGCCAAGCA | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa; HEK293T; HepG2; H1A; H1B; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621258 | ||
| mod ID: M6ASITE063835 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581678-184581679:+ | [9] | |
| Sequence | GATGCCAAGCAGCCGGCTGGACTTTCGGACTCTTGGACTTT | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | HeLa; HEK293T; HepG2; H1A; H1B; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621259 | ||
| mod ID: M6ASITE063836 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581686-184581687:+ | [9] | |
| Sequence | GCAGCCGGCTGGACTTTCGGACTCTTGGACTTTTGGATGCC | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | HeLa; HEK293T; HepG2; H1A; H1B; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621260 | ||
| mod ID: M6ASITE063837 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581694-184581695:+ | [9] | |
| Sequence | CTGGACTTTCGGACTCTTGGACTTTTGGATGCCTGGCCTTA | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | HeLa; HEK293T; A549; HepG2; H1A; H1B; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621261 | ||
| mod ID: M6ASITE063838 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581760-184581761:+ | [9] | |
| Sequence | TGGGAAAGGCCCAAGCTGGGACTTCTCCAGGCCTGTGTTCC | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | HeLa; HEK293T; A549; HepG2; H1A; H1B; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621262 | ||
| mod ID: M6ASITE063839 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581803-184581804:+ | [3] | |
| Sequence | CCCCAGGAAGTGCGCCCCAAACCTCTTCATATTGAAGATGG | ||
| Motif Score | 2.185083333 | ||
| Cell/Tissue List | HeLa; HEK293T; A549; H1A; H1B; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621263 | ||
| mod ID: M6ASITE063840 | Click to Show/Hide the Full List | ||
| mod site | chr3:184581871-184581872:+ | [10] | |
| Sequence | CCAAGCCCCTCAGGGCCCAGACCTTCCTGCTCTCCAGCAGG | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | HEK293T; HeLa; GSC-11; MSC | ||
| Seq Type List | MeRIP-seq; m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621264 | ||
| mod ID: M6ASITE063841 | Click to Show/Hide the Full List | ||
| mod site | chr3:184582037-184582038:+ | [11] | |
| Sequence | GAGCAGTCCCTCCCTCAGGAACTGGAGGAGGGGACTCCAGG | ||
| Motif Score | 3.373380952 | ||
| Cell/Tissue List | H1B; GSC-11; endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621265 | ||
| mod ID: M6ASITE063842 | Click to Show/Hide the Full List | ||
| mod site | chr3:184582050-184582051:+ | [11] | |
| Sequence | CTCAGGAACTGGAGGAGGGGACTCCAGGAATGGGGAAATGT | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | H1B; GSC-11; endometrial | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621266 | ||
| mod ID: M6ASITE063843 | Click to Show/Hide the Full List | ||
| mod site | chr3:184582220-184582221:+ | [6] | |
| Sequence | TTGCCCTTTGCCCCCCAGAGACTGACTCTCAGAGCCAGAGA | ||
| Motif Score | 3.319380952 | ||
| Cell/Tissue List | HEK293T; GSC-11; endometrial | ||
| Seq Type List | MeRIP-seq; m6A-seq | ||
| Transcript ID List | ENST00000330394.3 | ||
| External Link | RMBase: m6A_site_621267 | ||
References

