General Information of the m6A Target Gene (ID: M6ATAR00504)
Target Name Ephrin type-B receptor 3 (EPHB3)
Synonyms
EPH-like tyrosine kinase 2; EPH-like kinase 2; Embryonic kinase 2; EK2; hEK2; Tyrosine-protein kinase TYRO6
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Gene Name EPHB3
Chromosomal Location 3q27.1
Family Protein kinase superfamily, Tyr protein kinase family, Ephrin receptor subfamily
Function
Receptor tyrosine kinase which binds promiscuously transmembrane ephrin-B family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. Generally has an overlapping and redundant function with EPHB2. Like EPHB2, functions in axon guidance during development regulating for instance the neurons forming the corpus callosum and the anterior commissure, 2 major interhemispheric connections between the temporal lobes of the cerebral cortex. In addition to its role in axon guidance plays also an important redundant role with other ephrin-B receptors in development and maturation of dendritic spines and the formation of excitatory synapses. Controls other aspects of development through regulation of cell migration and positioning. This includes angiogenesis, palate development and thymic epithelium development for instance. Forward and reverse signaling through the EFNB2/EPHB3 complex also regulate migration and adhesion of cells that tubularize the urethra and septate the cloaca. Finally, plays an important role in intestinal epithelium differentiation segregating progenitor from differentiated cells in the crypt.
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Gene ID 2049
Uniprot ID
EPHB3_HUMAN
HGNC ID
HGNC:3394
KEGG ID
hsa:2049
Full List of m6A Methylation Regulator of This Target Gene and Corresponding Disease/Drug Response(s)
EPHB3 can be regulated by the following regulator(s), and cause disease/drug response(s). You can browse detail information of regulator(s) or disease/drug response(s).
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YTH domain-containing family protein 2 (YTHDF2) [READER]
Representative RNA-seq result indicating the expression of this target gene regulated by YTHDF2
Cell Line Mouse-cerebellum granule cell Mus musculus
Treatment: YTHDF2 knockdown mouse-cerebellum granule cell
Control: Wild type mouse-cerebellum granule cell
GSE153688
Regulation
logFC: -6.25E-01
p-value: 1.90E-03
More Results Click to View More RNA-seq Results
Representative RIP-seq result supporting the interaction between EPHB3 and the regulator
Cell Line Hela Homo sapiens
Regulation logFC: 1.21E+00 GSE49339
In total 1 item(s) under this regulator
Experiment 1 Reporting the m6A Methylation Regulator of This Target Gene [1]
Response Summary YTHDF2 enhanced TMZ resistance in GBM by activation of the PI3K/Akt and NF-Kappa-B signalling pathways via inhibition of Ephrin type-B receptor 3 (EPHB3) and TNFAIP3.
Target Regulation Down regulation
Responsed Disease Glioblastoma ICD-11: 2A00.00
Responsed Drug Temozolomide Approved
Pathway Response PI3K-Akt signaling pathway hsa04151
Cell Process RNA stability
In-vitro Model T98G Glioblastoma Homo sapiens CVCL_0556
LN-229 Glioblastoma Homo sapiens CVCL_0393
In-vivo Model 5 × 106 infected T98G cells (LV-NC or LV-YTHDF2) were injected into the flanks of mice through subcutaneous.
Brain cancer [ICD-11: 2A00]
In total 1 item(s) under this disease
Experiment 1 Reporting the m6A-centered Disease Response [1]
Response Summary YTHDF2 enhanced TMZ resistance in GBM by activation of the PI3K/Akt and NF-Kappa-B signalling pathways via inhibition of Ephrin type-B receptor 3 (EPHB3) and TNFAIP3.
Responsed Disease Glioblastoma [ICD-11: 2A00.00]
Target Regulator YTH domain-containing family protein 2 (YTHDF2) READER
Target Regulation Down regulation
Responsed Drug Temozolomide Approved
Pathway Response PI3K-Akt signaling pathway hsa04151
Cell Process RNA stability
In-vitro Model T98G Glioblastoma Homo sapiens CVCL_0556
LN-229 Glioblastoma Homo sapiens CVCL_0393
In-vivo Model 5 × 106 infected T98G cells (LV-NC or LV-YTHDF2) were injected into the flanks of mice through subcutaneous.
Temozolomide [Approved]
In total 1 item(s) under this drug
Experiment 1 Reporting the m6A-centered Drug Response [1]
Response Summary YTHDF2 enhanced TMZ resistance in GBM by activation of the PI3K/Akt and NF-Kappa-B signalling pathways via inhibition of Ephrin type-B receptor 3 (EPHB3) and TNFAIP3.
Target Regulator YTH domain-containing family protein 2 (YTHDF2) READER
Target Regulation Down regulation
Responsed Disease Glioblastoma ICD-11: 2A00.00
Pathway Response PI3K-Akt signaling pathway hsa04151
Cell Process RNA stability
In-vitro Model T98G Glioblastoma Homo sapiens CVCL_0556
LN-229 Glioblastoma Homo sapiens CVCL_0393
In-vivo Model 5 × 106 infected T98G cells (LV-NC or LV-YTHDF2) were injected into the flanks of mice through subcutaneous.
RNA Modification Sequencing Data Associated with the Target (ID: M6ATAR00504)
Ephrin type-B receptor 3 (EPHB3)
Adenosine-to-Inosine editing (A-to-I)
In total 1 m6A sequence/site(s) in this target gene
mod ID: A2ISITE000206 Click to Show/Hide the Full List
mod site chr3:184566473-184566474:+ [2]
Sequence GAGGTGGCCCTGGGTGAGTTAGGCTCCCCACAACATGCATC
Transcript ID List ENST00000330394.3
External Link RMBase: RNA-editing_site_101624
N6-methyladenosine (m6A)
In total 31 m6A sequence/site(s) in this target gene
mod ID: M6ASITE063813 Click to Show/Hide the Full List
mod site chr3:184561828-184561829:+ [3]
Sequence GCAGCAAGATCCCAGCTCGGACCCCGGACGGCGCGCGCCCC
Motif Score 3.622404762
Cell/Tissue List HeLa; H1A; MM6; peripheral-blood; GSC-11; HEK293A-TOA; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621237
mod ID: M6ASITE063814 Click to Show/Hide the Full List
mod site chr3:184561991-184561992:+ [4]
Sequence GGCGCCCCGGATCCTCCTGGACCGGTCCGTCCAGATTCCCG
Motif Score 3.622404762
Cell/Tissue List MM6; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621238
mod ID: M6ASITE063815 Click to Show/Hide the Full List
mod site chr3:184562016-184562017:+ [4]
Sequence TCCGTCCAGATTCCCGCGGGACCGACCTGTCCGCATCCCCA
Motif Score 3.622404762
Cell/Tissue List MM6; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621239
mod ID: M6ASITE063816 Click to Show/Hide the Full List
mod site chr3:184562039-184562040:+ [5]
Sequence GACCTGTCCGCATCCCCAGGACCGCCGGGCTCGGTGCACCG
Motif Score 3.622404762
Cell/Tissue List peripheral-blood; GSC-11; endometrial; GSCs
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621240
mod ID: M6ASITE063817 Click to Show/Hide the Full List
mod site chr3:184562118-184562119:+ [6]
Sequence CCTCTCCTGGATCTCCTGGGACCCGACGCGAGCCTGCCCCG
Motif Score 3.622404762
Cell/Tissue List GSC-11; endometrial; MM6
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621241
mod ID: M6ASITE063818 Click to Show/Hide the Full List
mod site chr3:184572704-184572705:+ [6]
Sequence TCCCCGGCTCCTGCAAGGAGACCTTCAACCTCTTCTACTAC
Motif Score 2.876744048
Cell/Tissue List GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621242
mod ID: M6ASITE063819 Click to Show/Hide the Full List
mod site chr3:184572774-184572775:+ [6]
Sequence CTCCCCCTTCTGGATGGAGAACCCCTACGTGAAAGTGGACA
Motif Score 2.930744048
Cell/Tissue List GSC-11; HEK293A-TOA; MSC; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621243
mod ID: M6ASITE063820 Click to Show/Hide the Full List
mod site chr3:184572792-184572793:+ [7]
Sequence GAACCCCTACGTGAAAGTGGACACCATTGCACCCGATGAGA
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T; GSC-11; HEK293A-TOA; MSC; endometrial
Seq Type List MAZTER-seq; m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621244
mod ID: M6ASITE063821 Click to Show/Hide the Full List
mod site chr3:184572843-184572844:+ [7]
Sequence GCTGGATGCCGGCCGTGTCAACACCAAGGTGCGCAGCTTTG
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621245
mod ID: M6ASITE063822 Click to Show/Hide the Full List
mod site chr3:184572903-184572904:+ [5]
Sequence CTTCTACCTGGCCTTCCAGGACCAGGGCGCCTGCATGTCGC
Motif Score 3.622404762
Cell/Tissue List peripheral-blood; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621246
mod ID: M6ASITE063823 Click to Show/Hide the Full List
mod site chr3:184579720-184579721:+ [8]
Sequence GTGTGCCGTGGTCGACTGAAACAGCCTGGCCGCCGAGAGGT
Motif Score 2.20572619
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621247
mod ID: M6ASITE063824 Click to Show/Hide the Full List
mod site chr3:184579794-184579795:+ [8]
Sequence CACCGAGAGGCAGCGGCGGGACTTCCTAAGCGAGGCCTCCA
Motif Score 4.065041667
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3; ENST00000473079.1
External Link RMBase: m6A_site_621248
mod ID: M6ASITE063825 Click to Show/Hide the Full List
mod site chr3:184581017-184581018:+ [8]
Sequence CCGGCTGCCACCACCCATGGACTGTCCCACAGCACTGCACC
Motif Score 4.065041667
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621249
mod ID: M6ASITE063826 Click to Show/Hide the Full List
mod site chr3:184581050-184581051:+ [8]
Sequence ACTGCACCAGCTCATGCTGGACTGCTGGGTGCGGGACCGGA
Motif Score 4.065041667
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621250
mod ID: M6ASITE063827 Click to Show/Hide the Full List
mod site chr3:184581065-184581066:+ [8]
Sequence GCTGGACTGCTGGGTGCGGGACCGGAACCTCAGGCCCAAAT
Motif Score 3.622404762
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621251
mod ID: M6ASITE063828 Click to Show/Hide the Full List
mod site chr3:184581071-184581072:+ [8]
Sequence CTGCTGGGTGCGGGACCGGAACCTCAGGCCCAAATTCTCCC
Motif Score 2.930744048
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621252
mod ID: M6ASITE063829 Click to Show/Hide the Full List
mod site chr3:184581110-184581111:+ [8]
Sequence CCAGATTGTCAATACCCTGGACAAGCTCATCCGCAATGCTG
Motif Score 3.643047619
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621253
mod ID: M6ASITE063830 Click to Show/Hide the Full List
mod site chr3:184581515-184581516:+ [9]
Sequence ATTTGGCTCCACCTGCAGAGACCTGCTCCGTATTGGGGTCA
Motif Score 2.876744048
Cell/Tissue List HeLa; GSC-11
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621254
mod ID: M6ASITE063831 Click to Show/Hide the Full List
mod site chr3:184581578-184581579:+ [9]
Sequence GATCCTGAGCAGTATCCAGGACATGCGGCTGCAGATGAACC
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; H1B; H1A; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621255
mod ID: M6ASITE063832 Click to Show/Hide the Full List
mod site chr3:184581596-184581597:+ [9]
Sequence GGACATGCGGCTGCAGATGAACCAGACGCTGCCTGTGCAGG
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T; H1B; H1A; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; endometrial; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621256
mod ID: M6ASITE063833 Click to Show/Hide the Full List
mod site chr3:184581639-184581640:+ [9]
Sequence TGACACCGGCTCCCACGGGGACCCTGAGGACCGTGCAGGGA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; HepG2; H1A; H1B; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621257
mod ID: M6ASITE063834 Click to Show/Hide the Full List
mod site chr3:184581648-184581649:+ [9]
Sequence CTCCCACGGGGACCCTGAGGACCGTGCAGGGATGCCAAGCA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; HepG2; H1A; H1B; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621258
mod ID: M6ASITE063835 Click to Show/Hide the Full List
mod site chr3:184581678-184581679:+ [9]
Sequence GATGCCAAGCAGCCGGCTGGACTTTCGGACTCTTGGACTTT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; HepG2; H1A; H1B; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621259
mod ID: M6ASITE063836 Click to Show/Hide the Full List
mod site chr3:184581686-184581687:+ [9]
Sequence GCAGCCGGCTGGACTTTCGGACTCTTGGACTTTTGGATGCC
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; HepG2; H1A; H1B; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621260
mod ID: M6ASITE063837 Click to Show/Hide the Full List
mod site chr3:184581694-184581695:+ [9]
Sequence CTGGACTTTCGGACTCTTGGACTTTTGGATGCCTGGCCTTA
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; HepG2; H1A; H1B; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621261
mod ID: M6ASITE063838 Click to Show/Hide the Full List
mod site chr3:184581760-184581761:+ [9]
Sequence TGGGAAAGGCCCAAGCTGGGACTTCTCCAGGCCTGTGTTCC
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; HepG2; H1A; H1B; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621262
mod ID: M6ASITE063839 Click to Show/Hide the Full List
mod site chr3:184581803-184581804:+ [3]
Sequence CCCCAGGAAGTGCGCCCCAAACCTCTTCATATTGAAGATGG
Motif Score 2.185083333
Cell/Tissue List HeLa; HEK293T; A549; H1A; H1B; MM6; peripheral-blood; GSC-11; HEK293A-TOA; MSC; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621263
mod ID: M6ASITE063840 Click to Show/Hide the Full List
mod site chr3:184581871-184581872:+ [10]
Sequence CCAAGCCCCTCAGGGCCCAGACCTTCCTGCTCTCCAGCAGG
Motif Score 2.876744048
Cell/Tissue List HEK293T; HeLa; GSC-11; MSC
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621264
mod ID: M6ASITE063841 Click to Show/Hide the Full List
mod site chr3:184582037-184582038:+ [11]
Sequence GAGCAGTCCCTCCCTCAGGAACTGGAGGAGGGGACTCCAGG
Motif Score 3.373380952
Cell/Tissue List H1B; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621265
mod ID: M6ASITE063842 Click to Show/Hide the Full List
mod site chr3:184582050-184582051:+ [11]
Sequence CTCAGGAACTGGAGGAGGGGACTCCAGGAATGGGGAAATGT
Motif Score 4.065041667
Cell/Tissue List H1B; GSC-11; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621266
mod ID: M6ASITE063843 Click to Show/Hide the Full List
mod site chr3:184582220-184582221:+ [6]
Sequence TTGCCCTTTGCCCCCCAGAGACTGACTCTCAGAGCCAGAGA
Motif Score 3.319380952
Cell/Tissue List HEK293T; GSC-11; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000330394.3
External Link RMBase: m6A_site_621267