Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00563)
Target Name Glypican-4 (GPC4)
Synonyms
K-glypican
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Gene Name GPC4
Sequence
MARFGLPALLCTLAVLSAALLAAELKSKSCSEVRRLYVSKGFNKNDAPLHEINGDHLKICPQGSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVVGNVNLEEMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQLKPFGDVPRKLKLQVTRAFVAARTFAQGLAVAGDVVSKVSVVNPTAQCTHALLKMIYCSHCRGLVTVKPCYNYCSNIMRGCLANQGDLDFEWNNFIDAMLMVAERLEGPFNIESVMDPIDVKISDAIMNMQDNSVQVSQKVFQGCGPPKPLPAGRISRSISESAFSARFRPHHPEERPTTAAGTSLDRLVTDVKEKLKQAKKFWSSLPSNVCNDERMAAGNGNEDDCWNGKGKSRYLFAVTGNGLANQGNNPEVQVDTSKPDILILRQIMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCEYQQCPSEFDYNATDHAGKSANEKADSAGVRPGAQAYLLTVFCILFLVMQREWR
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Family Glypican family
Function
Cell surface proteoglycan that bears heparan sulfate. May be involved in the development of kidney tubules and of the central nervous system.
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Gene ID 2239
HGNC ID HGNC:4452
Ensembl Gene ID ENSG00000076716
KEGG ID hsa:2239
Chromosomal Location Xq26.2
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00563)
Glypican-4 (GPC4)
N6-methyladenosine (m6A)
In total 46 m6A sequence/site(s) in this target gene
mod ID: M6ASITE093433 Click to Show/Hide the Full List
mod site chrX:133301155-133301156:- [1]
Sequence TACATTTCATTCAACTTTTTACACCAAATTCTGCAGAGTGG
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873378
mod ID: M6ASITE093434 Click to Show/Hide the Full List
mod site chrX:133301174-133301175:- [2]
Sequence TACTTGATAGCTCAGGGTCTACATTTCATTCAACTTTTTAC
Motif Score 2.078666667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873379
mod ID: M6ASITE093435 Click to Show/Hide the Full List
mod site chrX:133301193-133301194:- [2]
Sequence TTTTATATTGAAACATAATTACTTGATAGCTCAGGGTCTAC
Motif Score 2.494845238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873380
mod ID: M6ASITE093436 Click to Show/Hide the Full List
mod site chrX:133301201-133301202:- [2]
Sequence TTCTCTATTTTTATATTGAAACATAATTACTTGATAGCTCA
Motif Score 2.20572619
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873381
mod ID: M6ASITE093437 Click to Show/Hide the Full List
mod site chrX:133301269-133301270:- [2]
Sequence TTTTACCGAACCTAAAACCCACAAAGAGGTTGTTTGTGTTA
Motif Score 2.053113095
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873382
mod ID: M6ASITE093438 Click to Show/Hide the Full List
mod site chrX:133301285-133301286:- [2]
Sequence TTAAGATCCCAACTAATTTTACCGAACCTAAAACCCACAAA
Motif Score 2.052208333
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873383
mod ID: M6ASITE093439 Click to Show/Hide the Full List
mod site chrX:133301374-133301375:- [2]
Sequence CTCTGATAATGTAACAAATCACTTTCAAAGGAGTTCCCAGA
Motif Score 2.469291667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873384
mod ID: M6ASITE093440 Click to Show/Hide the Full List
mod site chrX:133301381-133301382:- [2]
Sequence CATAAAACTCTGATAATGTAACAAATCACTTTCAAAGGAGT
Motif Score 2.168095238
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873385
mod ID: M6ASITE093441 Click to Show/Hide the Full List
mod site chrX:133301449-133301450:- [1]
Sequence TTGTCCCAGGCCAAAGACTAACAACTGCCTTGGGAATCCCT
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873386
mod ID: M6ASITE093442 Click to Show/Hide the Full List
mod site chrX:133301453-133301454:- [2]
Sequence TCTGTTGTCCCAGGCCAAAGACTAACAACTGCCTTGGGAAT
Motif Score 3.319380952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873387
mod ID: M6ASITE093443 Click to Show/Hide the Full List
mod site chrX:133301529-133301530:- [1]
Sequence TAGGTAGAGCTGAGAATACTACATCTTAGTGGTGACCTTTA
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873388
mod ID: M6ASITE093444 Click to Show/Hide the Full List
mod site chrX:133301608-133301609:- [2]
Sequence AGGAGCCCACTTAGGGGAGAACTAGGTGTCCAGATTTTTGT
Motif Score 3.373380952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873389
mod ID: M6ASITE093445 Click to Show/Hide the Full List
mod site chrX:133301675-133301676:- [2]
Sequence TCTTATCAGTAAAACAAAGGACTTGCCATGGTTCACAGCAA
Motif Score 4.065041667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873390
mod ID: M6ASITE093446 Click to Show/Hide the Full List
mod site chrX:133301682-133301683:- [1]
Sequence AGCCCCCTCTTATCAGTAAAACAAAGGACTTGCCATGGTTC
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873391
mod ID: M6ASITE093447 Click to Show/Hide the Full List
mod site chrX:133301811-133301812:- [1]
Sequence GGCTCAGGGAATAGCTGTCAACACTCGGGCAAAGTTTTTGT
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873392
mod ID: M6ASITE093448 Click to Show/Hide the Full List
mod site chrX:133302022-133302023:- [1]
Sequence TTCAGGATGTCCCAGTTATCACATGTTCACACTTGGGTTTA
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873393
mod ID: M6ASITE093449 Click to Show/Hide the Full List
mod site chrX:133302151-133302152:- [1]
Sequence TGCTTTGAATGAGTTGAATTACATAAGCTAAGATCACTATA
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873394
mod ID: M6ASITE093450 Click to Show/Hide the Full List
mod site chrX:133302176-133302177:- [2]
Sequence ATAGTTGGAAGAGACTGCAGACTACTGCTTTGAATGAGTTG
Motif Score 3.319380952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873395
mod ID: M6ASITE093451 Click to Show/Hide the Full List
mod site chrX:133302280-133302281:- [1]
Sequence TTAAGACAGAATGTGAGGGCACAAGCAGGCTTCTGAGCCAC
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873396
mod ID: M6ASITE093452 Click to Show/Hide the Full List
mod site chrX:133302295-133302296:- [2]
Sequence TTTTTTAAATTATTATTAAGACAGAATGTGAGGGCACAAGC
Motif Score 2.897386905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873397
mod ID: M6ASITE093453 Click to Show/Hide the Full List
mod site chrX:133302439-133302440:- [3]
Sequence CTGAAATATTAAATAGCTGTACAGAAGCAGGTTTTATTTAT
Motif Score 2.856142857
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873398
mod ID: M6ASITE093454 Click to Show/Hide the Full List
mod site chrX:133302505-133302506:- [2]
Sequence GTGATCTCGCCTTGTTTCTTACAAGCAAACCAGGGTCCCTT
Motif Score 2.07285119
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873399
mod ID: M6ASITE093455 Click to Show/Hide the Full List
mod site chrX:133302617-133302618:- [4]
Sequence GCTAACAGTGTAGGTACAGAACTATAGTTAGTTGTGCATTT
Motif Score 3.373380952
Cell/Tissue List HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873400
mod ID: M6ASITE093456 Click to Show/Hide the Full List
mod site chrX:133302622-133302623:- [2]
Sequence ACGTGGCTAACAGTGTAGGTACAGAACTATAGTTAGTTGTG
Motif Score 2.856142857
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873401
mod ID: M6ASITE093457 Click to Show/Hide the Full List
mod site chrX:133302652-133302653:- [5]
Sequence GTTGGTTCCTGCTCCCCCAAACCATGTTAAACGTGGCTAAC
Motif Score 2.185083333
Cell/Tissue List HEK293T; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873402
mod ID: M6ASITE093458 Click to Show/Hide the Full List
mod site chrX:133302684-133302685:- [5]
Sequence CAGTTTTGGGAGGAAAAGGGACTGTGCATTGAGTTGGTTCC
Motif Score 4.065041667
Cell/Tissue List HEK293T; hESCs; fibroblasts; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873403
mod ID: M6ASITE093459 Click to Show/Hide the Full List
mod site chrX:133302720-133302721:- [2]
Sequence CACTGGTTTAAGAAGTGCTGACTTTGTTTTCTCATTCAGTT
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873404
mod ID: M6ASITE093460 Click to Show/Hide the Full List
mod site chrX:133302750-133302751:- [2]
Sequence GACAACAATGTACAGTTTTTACTATGTGGCCACTGGTTTAA
Motif Score 2.494845238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873405
mod ID: M6ASITE093461 Click to Show/Hide the Full List
mod site chrX:133302769-133302770:- [5]
Sequence TTTGCTTTTTAAATGAATGGACAACAATGTACAGTTTTTAC
Motif Score 3.643047619
Cell/Tissue List HEK293T; hNPCs; hESCs; fibroblasts; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873406
mod ID: M6ASITE093462 Click to Show/Hide the Full List
mod site chrX:133302858-133302859:- [5]
Sequence AGAGTGGAGATAATTCTCAAACTCTGAGAAAAAGTGTTCAT
Motif Score 2.627720238
Cell/Tissue List HEK293T; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873407
mod ID: M6ASITE093463 Click to Show/Hide the Full List
mod site chrX:133302999-133303000:- [1]
Sequence GTGCCCTTCAGAGTTTGACTACAATGCCACTGACCATGCTG
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873408
mod ID: M6ASITE093464 Click to Show/Hide the Full List
mod site chrX:133303197-133303198:- [1]
Sequence CAGCAAGATGAAGAATGCATACAATGGGAACGACGTGGACT
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873409
mod ID: M6ASITE093465 Click to Show/Hide the Full List
mod site chrX:133303260-133303261:- [1]
Sequence GGTTGACACCAGCAAACCAGACATACTGATCCTTCGTCAAA
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873410
mod ID: M6ASITE093466 Click to Show/Hide the Full List
mod site chrX:133305825-133305826:- [1]
Sequence TTCAGTGCTCGCTTCAGACCACATCACCCCGAGGAACGCCC
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873411
mod ID: M6ASITE093467 Click to Show/Hide the Full List
mod site chrX:133306057-133306058:- [1]
Sequence GATTTCTGATGCTATTATGAACATGCAGGATAATAGTGTTC
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873412
mod ID: M6ASITE093468 Click to Show/Hide the Full List
mod site chrX:133306111-133306112:- [1]
Sequence GAGGCTAGAGGGTCCTTTCAACATTGAATCGGTCATGGATC
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873413
mod ID: M6ASITE093469 Click to Show/Hide the Full List
mod site chrX:133311268-133311269:- [1]
Sequence GGATCTCGATTTTGAATGGAACAATTTCATAGGTGAGCAAG
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873414
mod ID: M6ASITE093470 Click to Show/Hide the Full List
mod site chrX:133311319-133311320:- [1]
Sequence ATGTTACAACTACTGCTCAAACATCATGAGAGGCTGTTTGG
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873415
mod ID: M6ASITE093471 Click to Show/Hide the Full List
mod site chrX:133311334-133311335:- [1]
Sequence CGTGACTGTGAAGCCATGTTACAACTACTGCTCAAACATCA
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873416
mod ID: M6ASITE093472 Click to Show/Hide the Full List
mod site chrX:133324460-133324461:- [1]
Sequence GAAGACATATGGCCATTTATACATGCAAAATTCTGAGCTAT
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873417
mod ID: M6ASITE093473 Click to Show/Hide the Full List
mod site chrX:133324476-133324477:- [1]
Sequence TGAATGATATGTTTGTGAAGACATATGGCCATTTATACATG
Motif Score 2.897386905
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873418
mod ID: M6ASITE093474 Click to Show/Hide the Full List
mod site chrX:133339196-133339197:- [1]
Sequence AGCTGTCTTTGCTTCACGTTACAAGAAGTTTGATGGTATGT
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873419
mod ID: M6ASITE093475 Click to Show/Hide the Full List
mod site chrX:133414837-133414838:- [1]
Sequence TTACGTGTCCAAAGGCTTCAACAAGAACGATGCCCCCCTCC
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873420
mod ID: M6ASITE093476 Click to Show/Hide the Full List
mod site chrX:133415162-133415163:- [6]
Sequence CCCGGCGCCTGGCACCGGGGACCGTTGCCTGACGCGAGGCC
Motif Score 3.622404762
Cell/Tissue List U2OS; H1A; CD4T; HEK293T; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873421
mod ID: M6ASITE093477 Click to Show/Hide the Full List
mod site chrX:133415255-133415256:- [6]
Sequence CGGGTTCGCTGCCCCGCGAAACCCCGAGGTCACCAGCCCGC
Motif Score 2.185083333
Cell/Tissue List U2OS; H1A; CD4T; GSC-11; HEK293T; iSLK; GSCs; MM6
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873422
mod ID: M6ASITE093478 Click to Show/Hide the Full List
mod site chrX:133415404-133415405:- [6]
Sequence GAGTCCAGCCGGACGAGCGGACCAGCGCAGGGCAGCCCAAG
Motif Score 3.622404762
Cell/Tissue List U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; CD4T; GSC-11; HEK293T; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000370828.4
External Link RMBase: m6A_site_873423