Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00561)

Target Name	Long Terminal Repeat 12 (LTR12)
Gene Name	LTR12

RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00561)

Long Terminal Repeat 12 (LTR12)

N6-methyladenosine (m6A)

In total 28 m6A sequence/site(s) in this target gene
mod ID: M6ASITE005214		Click to Show/Hide the Full List
mod site	chr11:38111793-38111794:+		[1]
Sequence	CTTGTATTTGTCTGGAAGTCACTCAACAGTATTGAATTTCG
Motif Score	2.469291667
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	rmsk_3525647
External Link	RMBase: m6A_site_137766
mod ID: M6ASITE017507		Click to Show/Hide the Full List
mod site	chr13:51200062-51200063:-		[2]
Sequence	CTGGAGGGAACCAACTCCAGACACAACAGTGCACTGGGTAA
Motif Score	2.897386905
Cell/Tissue List	H1A; H1B
Seq Type List	m6A-seq
Transcript ID List	ENST00000636098.1; rmsk_4015678
External Link	RMBase: m6A_site_229013
mod ID: M6ASITE017508		Click to Show/Hide the Full List
mod site	chr13:51200073-51200074:-		[2]
Sequence	CTACGAACCCACTGGAGGGAACCAACTCCAGACACAACAGT
Motif Score	2.930744048
Cell/Tissue List	H1A; H1B
Seq Type List	m6A-seq
Transcript ID List	rmsk_4015678; ENST00000636098.1
External Link	RMBase: m6A_site_229014
mod ID: M6ASITE017509		Click to Show/Hide the Full List
mod site	chr13:51200087-51200088:-		[2]
Sequence	TGAAGTCAGTGAGACTACGAACCCACTGGAGGGAACCAACT
Motif Score	2.930744048
Cell/Tissue List	H1A; H1B
Seq Type List	m6A-seq
Transcript ID List	ENST00000636098.1; rmsk_4015678
External Link	RMBase: m6A_site_229015
mod ID: M6ASITE017510		Click to Show/Hide the Full List
mod site	chr13:51200094-51200095:-		[2]
Sequence	TCATTGTTGAAGTCAGTGAGACTACGAACCCACTGGAGGGA
Motif Score	3.319380952
Cell/Tissue List	H1A; H1B
Seq Type List	m6A-seq
Transcript ID List	rmsk_4015678; ENST00000636098.1
External Link	RMBase: m6A_site_229016
mod ID: M6ASITE031695		Click to Show/Hide the Full List
mod site	chr17:31762692-31762693:+		[3]
Sequence	CACTCCTGAAGTCAAGCGAGACCATGAACCCACCAGAAGGA
Motif Score	2.876744048
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000577970.1; rmsk_4671252
External Link	RMBase: m6A_site_357501
mod ID: M6ASITE031696		Click to Show/Hide the Full List
mod site	chr17:31762699-31762700:+		[3]
Sequence	GAAGTCAAGCGAGACCATGAACCCACCAGAAGGAAGAAACT
Motif Score	2.930744048
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000577970.1; rmsk_4671252
External Link	RMBase: m6A_site_357502
mod ID: M6ASITE031697		Click to Show/Hide the Full List
mod site	chr17:31762717-31762718:+		[3]
Sequence	GAACCCACCAGAAGGAAGAAACTCCAGACCCATCTGAACAT
Motif Score	2.627720238
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000577970.1; rmsk_4671252
External Link	RMBase: m6A_site_357503
mod ID: M6ASITE031698		Click to Show/Hide the Full List
mod site	chr17:31762724-31762725:+		[3]
Sequence	CCAGAAGGAAGAAACTCCAGACCCATCTGAACATCTGAAGG
Motif Score	2.876744048
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000577970.1; rmsk_4671252
External Link	RMBase: m6A_site_357504
mod ID: M6ASITE031699		Click to Show/Hide the Full List
mod site	chr17:31762734-31762735:+		[3]
Sequence	GAAACTCCAGACCCATCTGAACATCTGAAGGAACAAACTCC
Motif Score	2.951386905
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000577970.1; rmsk_4671252
External Link	RMBase: m6A_site_357505
mod ID: M6ASITE031700		Click to Show/Hide the Full List
mod site	chr17:31762746-31762747:+		[3]
Sequence	CCATCTGAACATCTGAAGGAACAAACTCCGGACACACCACT
Motif Score	2.951386905
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	rmsk_4671252; ENST00000577970.1
External Link	RMBase: m6A_site_357506
mod ID: M6ASITE031701		Click to Show/Hide the Full List
mod site	chr17:31762757-31762758:+		[3]
Sequence	TCTGAAGGAACAAACTCCGGACACACCACTTTTAAAAACTG
Motif Score	3.643047619
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000577970.1; rmsk_4671252
External Link	RMBase: m6A_site_357507
mod ID: M6ASITE031702		Click to Show/Hide the Full List
mod site	chr17:31762774-31762775:+		[3]
Sequence	CGGACACACCACTTTTAAAAACTGTAACACTCACCGTGAGG
Motif Score	2.627720238
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000577970.1; rmsk_4671252
External Link	RMBase: m6A_site_357508
mod ID: M6ASITE068295		Click to Show/Hide the Full List
mod site	chr4:151352925-151352926:-		[3]
Sequence	CCGGGAGGAACCAATTCCGGACACAGTATGGTTGGTCCACA
Motif Score	3.643047619
Cell/Tissue List	HeLa; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000603264.1; rmsk_1473837
External Link	RMBase: m6A_site_654060
mod ID: M6ASITE068296		Click to Show/Hide the Full List
mod site	chr4:151352936-151352937:-		[3]
Sequence	CCAAGAACCCACCGGGAGGAACCAATTCCGGACACAGTATG
Motif Score	2.930744048
Cell/Tissue List	HeLa; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000603264.1; rmsk_1473837
External Link	RMBase: m6A_site_654061
mod ID: M6ASITE068297		Click to Show/Hide the Full List
mod site	chr4:151352950-151352951:-		[3]
Sequence	TGAAGTCAGCCAGACCAAGAACCCACCGGGAGGAACCAATT
Motif Score	2.930744048
Cell/Tissue List	HeLa; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000603264.1; rmsk_1473837
External Link	RMBase: m6A_site_654062
mod ID: M6ASITE068298		Click to Show/Hide the Full List
mod site	chr4:151352957-151352958:-		[3]
Sequence	TCATTCTTGAAGTCAGCCAGACCAAGAACCCACCGGGAGGA
Motif Score	2.876744048
Cell/Tissue List	HeLa; H1B; iSLK; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000603264.1; rmsk_1473837
External Link	RMBase: m6A_site_654063
mod ID: M6ASITE068299		Click to Show/Hide the Full List
mod site	chr4:151353008-151353009:-		[3]
Sequence	CAGACATACCATCTGTAAGAACTGTAACACTTACCGCGAGG
Motif Score	3.373380952
Cell/Tissue List	HeLa; HEK293T; H1A; H1B; iSLK; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000603264.1; rmsk_1473837
External Link	RMBase: m6A_site_654064
mod ID: M6ASITE068300		Click to Show/Hide the Full List
mod site	chr4:151353025-151353026:-		[3]
Sequence	TCTGAAGGAACAAACTCCAGACATACCATCTGTAAGAACTG
Motif Score	2.897386905
Cell/Tissue List	HeLa; HEK293T; H1A; H1B; iSLK; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000603264.1; rmsk_1473837
External Link	RMBase: m6A_site_654065
mod ID: M6ASITE068301		Click to Show/Hide the Full List
mod site	chr4:151353036-151353037:-		[3]
Sequence	ACATCTGAACATCTGAAGGAACAAACTCCAGACATACCATC
Motif Score	2.951386905
Cell/Tissue List	HeLa; HEK293T; H1A; H1B; iSLK; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000603264.1; rmsk_1473837
External Link	RMBase: m6A_site_654066
mod ID: M6ASITE068302		Click to Show/Hide the Full List
mod site	chr4:151353048-151353049:-		[3]
Sequence	AAAACTCCAGACACATCTGAACATCTGAAGGAACAAACTCC
Motif Score	2.951386905
Cell/Tissue List	HeLa; HEK293T; H1A; H1B; iSLK; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000603264.1; rmsk_1473837
External Link	RMBase: m6A_site_654067
mod ID: M6ASITE068303		Click to Show/Hide the Full List
mod site	chr4:151353058-151353059:-		[3]
Sequence	CCGGAAGGAAAAAACTCCAGACACATCTGAACATCTGAAGG
Motif Score	2.897386905
Cell/Tissue List	HeLa; HEK293T; H1A; H1B; iSLK; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	rmsk_1473837; ENST00000603264.1
External Link	RMBase: m6A_site_654068
mod ID: M6ASITE068304		Click to Show/Hide the Full List
mod site	chr4:151353065-151353066:-		[3]
Sequence	AAACCCACCGGAAGGAAAAAACTCCAGACACATCTGAACAT
Motif Score	2.627720238
Cell/Tissue List	HeLa; HEK293T; H1A; H1B; iSLK; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	rmsk_1473837; ENST00000603264.1
External Link	RMBase: m6A_site_654069
mod ID: M6ASITE068305		Click to Show/Hide the Full List
mod site	chr4:151353083-151353084:-		[3]
Sequence	GAAGTCAAGCAAGACCACAAACCCACCGGAAGGAAAAAACT
Motif Score	2.185083333
Cell/Tissue List	HeLa; HEK293T; H1A; iSLK; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	rmsk_1473837; ENST00000603264.1
External Link	RMBase: m6A_site_654070
mod ID: M6ASITE068306		Click to Show/Hide the Full List
mod site	chr4:151353090-151353091:-		[3]
Sequence	CACTCCTGAAGTCAAGCAAGACCACAAACCCACCGGAAGGA
Motif Score	2.876744048
Cell/Tissue List	HeLa; HEK293T; H1A; iSLK; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	rmsk_1473837; ENST00000603264.1
External Link	RMBase: m6A_site_654071
mod ID: M6ASITE068307		Click to Show/Hide the Full List
mod site	chr4:151353173-151353174:-		[3]
Sequence	CCACGAACCCACCGGGAGGAACAAACAACTCTGGACGCACC
Motif Score	2.951386905
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000603264.1; rmsk_1473837
External Link	RMBase: m6A_site_654072
mod ID: M6ASITE068308		Click to Show/Hide the Full List
mod site	chr4:151353187-151353188:-		[3]
Sequence	TGAAGTCAGAAAGACCACGAACCCACCGGGAGGAACAAACA
Motif Score	2.930744048
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	rmsk_1473837; ENST00000603264.1
External Link	RMBase: m6A_site_654073
mod ID: M6ASITE068309		Click to Show/Hide the Full List
mod site	chr4:151353194-151353195:-		[3]
Sequence	TCGCTCCTGAAGTCAGAAAGACCACGAACCCACCGGGAGGA
Motif Score	2.876744048
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000603264.1; rmsk_1473837
External Link	RMBase: m6A_site_654074

Ref 1	DART-seq: an antibody-free method for global m(6)A detection. Nat Methods. 2019 Dec;16(12):1275-1280. doi: 10.1038/s41592-019-0570-0. Epub 2019 Sep 23.
Ref 2	m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell. 2014 Dec 4;15(6):707-19. doi: 10.1016/j.stem.2014.09.019. Epub 2014 Oct 16.
Ref 3	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.

Epigenetic Target Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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