General Information of the Epigenetic Target (ID: EPITAR00554)
Target Name Serine/threonine-protein phosphatase PP1-alpha catalytic subunit (PPP1CA)
Synonyms
PPP1A: PP-1A
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Gene Name PPP1CA
Sequence
MSDSEKLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKNKGKYGQFSGLNPGGRPITPPRNSAKAKK
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Family PPP phosphatase family, PP-1 subfamily
Function
Protein phosphatase that associates with over 200 regulatory proteins to form highly specific holoenzymes which dephosphorylate hundreds of biological targets (PubMed:28216226, PubMed:30158517, PubMed:35768504, PubMed:35830882, PubMed:35831509, PubMed:36175670, PubMed:39603239, PubMed:39603240). Protein phosphatase 1 (PP1) is essential for cell division, transcription elongation, and participates in the regulation of glycogen metabolism, muscle contractility and protein synthesis (PubMed:35768504, PubMed:35830882, PubMed:35831509, PubMed:36175670, PubMed:39603239, PubMed:39603240). Involved in regulation of ionic conductances and long-term synaptic plasticity. May play an important role in dephosphorylating substrates such as the postsynaptic density-associated Ca(2+)/calmodulin dependent protein kinase II. Catalytic component of the PNUTS-PP1 protein phosphatase complex, a protein phosphatase 1 (PP1) complex that promotes RNA polymerase II transcription pause-release, allowing transcription elongation: the PNUTS-PP1 complex mediates the release of RNA polymerase II from promoter-proximal region of genes by catalyzing dephosphorylation of proteins involved in transcription, such as AFF4, CDK9, MEPCE, INTS12, NCBP1, POLR2M/GDOWN1 and SUPT6H (PubMed:39603239, PubMed:39603240). The PNUTS-PP1 complex also regulates transcription termination by mediating dephosphorylation of SUPT5H in termination zones downstream of poly(A) sites, thereby promoting deceleration of RNA polymerase II transcription (PubMed:31677974). PNUTS-PP1 complex is also involved in the response to replication stress by mediating dephosphorylation of POLR2A at 'Ser-5' of the CTD, promoting RNA polymerase II degradation (PubMed:33264625). PNUTS-PP1 also plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase (PubMed:20516061). Regulates NEK2 function in terms of kinase activity and centrosome number and splitting, both in the presence and absence of radiation-induced DNA damage (PubMed:17283141). Regulator of neural tube and optic fissure closure, and enteric neural crest cell (ENCCs) migration during development (By similarity). In balance with CSNK1D and CSNK1E, determines the circadian period length, through the regulation of the speed and rhythmicity of PER1 and PER2 phosphorylation (PubMed:21712997). May dephosphorylate CSNK1D and CSNK1E (PubMed:21712997). Dephosphorylates the 'Ser-418' residue of FOXP3 in regulatory T-cells (Treg) from patients with rheumatoid arthritis, thereby inactivating FOXP3 and rendering Treg cells functionally defective (PubMed:23396208). Dephosphorylates CENPA (PubMed:25556658). Dephosphorylates the 'Ser-139' residue of ATG16L1 causing dissociation of ATG12-ATG5-ATG16L1 complex, thereby inhibiting autophagy (PubMed:26083323). Together with PPP1CC (PP1-gamma subunit), dephosphorylates IFIH1/MDA5 and RIG-I leading to their activation and a functional innate immune response (PubMed:23499489). Core component of the SHOC2-MRAS-PP1c (SMP) holophosphatase complex that regulates the MAPK pathway activation (PubMed:35768504, PubMed:35830882, PubMed:35831509, PubMed:36175670). The SMP complex specifically dephosphorylates the inhibitory phosphorylation at 'Ser-259' of RAF1 kinase, 'Ser-365' of BRAF kinase and 'Ser-214' of ARAF kinase, stimulating their kinase activities (PubMed:35768504, PubMed:35830882, PubMed:35831509, PubMed:36175670). The SMP complex enhances the dephosphorylation activity and substrate specificity of PP1c (PubMed:35768504, PubMed:36175670). {ECO:0000250|UniProtKB:P62137, ECO:0000269|PubMed:17283141, ECO:0000269|PubMed:20516061, ECO:0000269|PubMed:21712997, ECO:0000269|PubMed:23396208, ECO:0000269|PubMed:23499489, ECO:0000269|PubMed:25556658, ECO:0000269|PubMed:26083323, ECO:0000269|PubMed:28216226, ECO:0000269|PubMed:30158517, ECO:0000269|PubMed:31677974, ECO:0000269|PubMed:33264625, ECO:0000269|PubMed:35768504, ECO:0000269|PubMed:35830882, ECO:0000269|PubMed:35831509, ECO:0000269|PubMed:36175670, ECO:0000269|PubMed:39603239, ECO:0000269|PubMed:39603240}.; (Microbial infection) Necessary for alphaviruses replication. {ECO:0000269|PubMed:29769351}.
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Gene ID 5499
HGNC ID HGNC:9281
Ensembl Gene ID ENSG00000172531
KEGG ID hsa:5499
Chromosomal Location 11q13.2
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00554)
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit (PPP1CA)
Adenosine-to-Inosine editing (A-to-I)
In total 3 m6A sequence/site(s) in this target gene
mod ID: A2ISITE005077 Click to Show/Hide the Full List
mod site chr11:67400208-67400209:- [1]
Sequence GGACCCAGAAGCTCCAAGTTACAGTGAGCTATGATCTTGCC
Transcript ID List ENST00000527663.5; ENST00000376745.9; ENST00000526510.5; ENST00000537694.1; ENST00000532446.5; ENST00000358239.8; ENST00000312989.11; rmsk_3574348
External Link RMBase: RNA-editing_site_23347
mod ID: A2ISITE005078 Click to Show/Hide the Full List
mod site chr11:67402443-67402444:- [1]
Sequence TGCACTCCAGCCTGGGGGACAGAGCAAAACTCTGTCTCAAA
Transcript ID List ENST00000537694.1; ENST00000546202.5; rmsk_3574351; ENST00000542876.1
External Link RMBase: RNA-editing_site_23348
mod ID: A2ISITE005079 Click to Show/Hide the Full List
mod site chr11:67402625-67402626:- [1]
Sequence CACTTGAGGTTAGGAGTTCAAGGCCACCTGGCCAACATGGC
Transcript ID List ENST00000546202.5; ENST00000542876.1; ENST00000537694.1; rmsk_3574351
External Link RMBase: RNA-editing_site_23349
5-methylcytidine (m5C)
In total 4 m6A sequence/site(s) in this target gene
mod ID: M5CSITE005247 Click to Show/Hide the Full List
mod site chr11:67398723-67398724:- [2]
Sequence AGACCCTCATGTGCTCTTTCCAGGTGAGTGTGGGGAAGAAA
Seq Type List Bisulfite-seq
Transcript ID List ENST00000526510.5; ENST00000358239.8; ENST00000312989.11; ENST00000532446.5; ENST00000532279.1; ENST00000376745.9
External Link RMBase: m5C_site_8230
mod ID: M5CSITE005248 Click to Show/Hide the Full List
mod site chr11:67399168-67399169:- [2]
Sequence GAAGTGACCTTCCCCCGGCCCCCCAGGCCTGTCCCCGGACC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000358239.8; ENST00000526510.5; ENST00000532279.1; ENST00000527663.5; ENST00000532446.5; ENST00000376745.9; ENST00000537694.1; ENST00000312989.11
External Link RMBase: m5C_site_8231
mod ID: M5CSITE005249 Click to Show/Hide the Full List
mod site chr11:67401202-67401203:- [2]
Sequence TCCTGACACCCCATTGCGCCCCAGTGCAGGGCTCGCGGCCT
Seq Type List Bisulfite-seq
Transcript ID List ENST00000532446.5; ENST00000376745.9; ENST00000542876.1; ENST00000529724.1; ENST00000546202.5; ENST00000527663.5; ENST00000358239.8; ENST00000312989.11; ENST00000526510.5; ENST00000537694.1
External Link RMBase: m5C_site_8232
mod ID: M5CSITE005250 Click to Show/Hide the Full List
mod site chr11:67401206-67401207:- [2]
Sequence AGGGTCCTGACACCCCATTGCGCCCCAGTGCAGGGCTCGCG
Seq Type List Bisulfite-seq
Transcript ID List ENST00000529724.1; ENST00000526510.5; ENST00000546202.5; ENST00000527663.5; ENST00000542876.1; ENST00000312989.11; ENST00000358239.8; ENST00000532446.5; ENST00000376745.9; ENST00000537694.1
External Link RMBase: m5C_site_8233
N6-methyladenosine (m6A)
In total 37 m6A sequence/site(s) in this target gene
mod ID: M6ASITE007606 Click to Show/Hide the Full List
mod site chr11:67398425-67398426:- [3]
Sequence AGGCCCACCTGTCACGGGGAACATGGAGCCTTGGTGTATTT
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; hESC-HEK293T; HepG2; A549; MM6; Huh7
Seq Type List m6A-seq; DART-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000526510.5; ENST00000376745.9; ENST00000312989.11; ENST00000532446.5
External Link RMBase: m6A_site_151187
mod ID: M6ASITE007607 Click to Show/Hide the Full List
mod site chr11:67398432-67398433:- [4]
Sequence ACCCCTCAGGCCCACCTGTCACGGGGAACATGGAGCCTTGG
Motif Score 2.021232143
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000526510.5; ENST00000358239.8; ENST00000376745.9; ENST00000312989.11; ENST00000532446.5
External Link RMBase: m6A_site_151188
mod ID: M6ASITE007608 Click to Show/Hide the Full List
mod site chr11:67398491-67398492:- [4]
Sequence CCAGATGATGGATTGATTGTACAGAAATCATGCTGCCATGC
Motif Score 2.856142857
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000312989.11; ENST00000526510.5; ENST00000376745.9; ENST00000358239.8; ENST00000532446.5
External Link RMBase: m6A_site_151189
mod ID: M6ASITE007609 Click to Show/Hide the Full List
mod site chr11:67398526-67398527:- [5]
Sequence AGCCAAGAAATAGCCCCCGCACACCACCCTGTGCCCCAGAT
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000376745.9; ENST00000312989.11; ENST00000526510.5; ENST00000532446.5; ENST00000358239.8
External Link RMBase: m6A_site_151190
mod ID: M6ASITE007610 Click to Show/Hide the Full List
mod site chr11:67398589-67398590:- [6]
Sequence CGGGCAGTTCAGTGGCCTGAACCCTGGAGGCCGACCCATCA
Motif Score 2.930744048
Cell/Tissue List HepG2; MT4; A549; MM6; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000532279.1; ENST00000358239.8; ENST00000376745.9; ENST00000532446.5; ENST00000526510.5; ENST00000312989.11
External Link RMBase: m6A_site_151191
mod ID: M6ASITE007611 Click to Show/Hide the Full List
mod site chr11:67398622-67398623:- [5]
Sequence CCTCAAGCCCGCCGACAAGAACAAGGGGAAGTACGGGCAGT
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T; HepG2; MT4; A549; MM6; Huh7; endometrial
Seq Type List MAZTER-seq; m6A-seq; MeRIP-seq
Transcript ID List ENST00000376745.9; ENST00000532446.5; ENST00000358239.8; ENST00000526510.5; ENST00000532279.1; ENST00000312989.11
External Link RMBase: m6A_site_151192
mod ID: M6ASITE007612 Click to Show/Hide the Full List
mod site chr11:67398628-67398629:- [5]
Sequence TTAGATCCTCAAGCCCGCCGACAAGAACAAGGGGAAGTACG
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000358239.8; ENST00000312989.11; ENST00000526510.5; ENST00000376745.9; ENST00000532279.1; ENST00000532446.5
External Link RMBase: m6A_site_151193
mod ID: M6ASITE007613 Click to Show/Hide the Full List
mod site chr11:67398741-67398742:- [3]
Sequence CCATGATGAGTGTGGACGAGACCCTCATGTGCTCTTTCCAG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; MT4; MM6; Huh7; HEK293T; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000527663.5; ENST00000312989.11; ENST00000526510.5; ENST00000376745.9; ENST00000532446.5; ENST00000532279.1; ENST00000358239.8
External Link RMBase: m6A_site_151194
mod ID: M6ASITE007614 Click to Show/Hide the Full List
mod site chr11:67398746-67398747:- [4]
Sequence TGGCGCCATGATGAGTGTGGACGAGACCCTCATGTGCTCTT
Motif Score 3.616982143
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000527663.5; ENST00000532279.1; ENST00000526510.5; ENST00000358239.8; ENST00000312989.11; ENST00000376745.9; ENST00000532446.5
External Link RMBase: m6A_site_151195
mod ID: M6ASITE007615 Click to Show/Hide the Full List
mod site chr11:67398773-67398774:- [7]
Sequence CAACTACTGTGGCGAGTTTGACAATGCTGGCGCCATGATGA
Motif Score 2.859755952
Cell/Tissue List kidney; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000532446.5; ENST00000358239.8; ENST00000532279.1; ENST00000526510.5; ENST00000527663.5; ENST00000312989.11; ENST00000376745.9
External Link RMBase: m6A_site_151196
mod ID: M6ASITE007616 Click to Show/Hide the Full List
mod site chr11:67398810-67398811:- [5]
Sequence TTGCCAAGCGGCAGCTGGTGACACTTTTCTCAGCTCCCAAC
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000527663.5; ENST00000532446.5; ENST00000532279.1; ENST00000312989.11; ENST00000526510.5; ENST00000358239.8; ENST00000376745.9
External Link RMBase: m6A_site_151197
mod ID: M6ASITE007617 Click to Show/Hide the Full List
mod site chr11:67398880-67398881:- [3]
Sequence GGGCCGTGCCTGCGCTCGGGACTGACTGCTCCCATCCTCGC
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; Huh7; peripheral-blood; HEK293T; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000358239.8; ENST00000527663.5; ENST00000376745.9; ENST00000526510.5; ENST00000312989.11; ENST00000532446.5; ENST00000532279.1
External Link RMBase: m6A_site_151198
mod ID: M6ASITE007618 Click to Show/Hide the Full List
mod site chr11:67398945-67398946:- [7]
Sequence TTGGACCTCATCTGCCGAGCACACCAGGTGGGCTGGTGGCT
Motif Score 2.830589286
Cell/Tissue List brain; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000532279.1; ENST00000312989.11; ENST00000527663.5; ENST00000358239.8; ENST00000532446.5; ENST00000526510.5; ENST00000376745.9; ENST00000537694.1
External Link RMBase: m6A_site_151199
mod ID: M6ASITE007619 Click to Show/Hide the Full List
mod site chr11:67398961-67398962:- [3]
Sequence CCTCCACAAGCACGACTTGGACCTCATCTGCCGAGCACACC
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; Huh7; peripheral-blood; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000526510.5; ENST00000376745.9; ENST00000532446.5; ENST00000537694.1; ENST00000527663.5; ENST00000358239.8; ENST00000312989.11; ENST00000532279.1
External Link RMBase: m6A_site_151200
mod ID: M6ASITE007620 Click to Show/Hide the Full List
mod site chr11:67398976-67398977:- [7]
Sequence GGTGGTGGCCAAGTTCCTCCACAAGCACGACTTGGACCTCA
Motif Score 2.053113095
Cell/Tissue List kidney; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000532279.1; ENST00000376745.9; ENST00000526510.5; ENST00000527663.5; ENST00000537694.1; ENST00000358239.8; ENST00000312989.11; ENST00000532446.5
External Link RMBase: m6A_site_151201
mod ID: M6ASITE007621 Click to Show/Hide the Full List
mod site chr11:67399057-67399058:- [7]
Sequence CCTGCTGTGGTCTGACCCTGACAAGGACGTGCAGGGCTGGG
Motif Score 2.859755952
Cell/Tissue List liver; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000312989.11; ENST00000532446.5; ENST00000537694.1; ENST00000532279.1; ENST00000526510.5; ENST00000358239.8; ENST00000527663.5; ENST00000376745.9
External Link RMBase: m6A_site_151202
mod ID: M6ASITE007622 Click to Show/Hide the Full List
mod site chr11:67399632-67399633:- [8]
Sequence ACAACATCAAACTGTGGAAAACCTTCACTGACTGCTTCAAC
Motif Score 2.185083333
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000527663.5; ENST00000312989.11; ENST00000526510.5; ENST00000376745.9; ENST00000537694.1; ENST00000358239.8; ENST00000532446.5
External Link RMBase: m6A_site_151203
mod ID: M6ASITE007623 Click to Show/Hide the Full List
mod site chr11:67399642-67399643:- [9]
Sequence AAGAGACGCTACAACATCAAACTGTGGAAAACCTTCACTGA
Motif Score 2.627720238
Cell/Tissue List A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000376745.9; ENST00000537694.1; ENST00000532446.5; ENST00000358239.8; ENST00000312989.11; ENST00000526510.5; ENST00000527663.5
External Link RMBase: m6A_site_151204
mod ID: M6ASITE007624 Click to Show/Hide the Full List
mod site chr11:67399649-67399650:- [5]
Sequence GGCAGGCAAGAGACGCTACAACATCAAACTGTGGAAAACCT
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000537694.1; ENST00000358239.8; ENST00000526510.5; ENST00000527663.5; ENST00000376745.9; ENST00000312989.11; ENST00000532446.5
External Link RMBase: m6A_site_151205
mod ID: M6ASITE007625 Click to Show/Hide the Full List
mod site chr11:67399652-67399653:- [5]
Sequence CTGGGCAGGCAAGAGACGCTACAACATCAAACTGTGGAAAA
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000358239.8; ENST00000312989.11; ENST00000526510.5; ENST00000527663.5; ENST00000532446.5; ENST00000537694.1; ENST00000376745.9
External Link RMBase: m6A_site_151206
mod ID: M6ASITE007626 Click to Show/Hide the Full List
mod site chr11:67400735-67400736:- [6]
Sequence CTTCTTCCTGCTCCGTGGGAACCACGAGTGTGCCAGCATCA
Motif Score 2.930744048
Cell/Tissue List HepG2; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000358239.8; ENST00000376745.9; ENST00000526510.5; ENST00000527663.5; ENST00000529724.1; ENST00000532446.5; ENST00000312989.11; ENST00000537694.1
External Link RMBase: m6A_site_151207
mod ID: M6ASITE007627 Click to Show/Hide the Full List
mod site chr11:67400756-67400757:- [6]
Sequence TAAGATCAAGTACCCCGAGAACTTCTTCCTGCTCCGTGGGA
Motif Score 3.373380952
Cell/Tissue List HepG2; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000312989.11; ENST00000529724.1; ENST00000537694.1; ENST00000376745.9; ENST00000532446.5; ENST00000358239.8; ENST00000527663.5; ENST00000526510.5
External Link RMBase: m6A_site_151208
mod ID: M6ASITE007628 Click to Show/Hide the Full List
mod site chr11:67400799-67400800:- [9]
Sequence GGGGCAAGCAGTCCTTGGAGACCATCTGCCTGCTGCTGGCC
Motif Score 2.876744048
Cell/Tissue List A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000529724.1; ENST00000526510.5; ENST00000527663.5; ENST00000376745.9; ENST00000537694.1; ENST00000312989.11; ENST00000358239.8; ENST00000532446.5
External Link RMBase: m6A_site_151209
mod ID: M6ASITE007629 Click to Show/Hide the Full List
mod site chr11:67400822-67400823:- [9]
Sequence CTTTCTGGGGGACTATGTGGACAGGGGCAAGCAGTCCTTGG
Motif Score 3.643047619
Cell/Tissue List A549; Huh7; peripheral-blood
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000312989.11; ENST00000529724.1; ENST00000532446.5; ENST00000527663.5; ENST00000376745.9; ENST00000526510.5; ENST00000358239.8; ENST00000537694.1
External Link RMBase: m6A_site_151210
mod ID: M6ASITE007630 Click to Show/Hide the Full List
mod site chr11:67400831-67400832:- [9]
Sequence CAACTACCTCTTTCTGGGGGACTATGTGGACAGGGGCAAGC
Motif Score 4.065041667
Cell/Tissue List A549; Huh7; peripheral-blood
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000532446.5; ENST00000376745.9; ENST00000358239.8; ENST00000526510.5; ENST00000537694.1; ENST00000529724.1; ENST00000312989.11; ENST00000527663.5
External Link RMBase: m6A_site_151211
mod ID: M6ASITE007631 Click to Show/Hide the Full List
mod site chr11:67400849-67400850:- [4]
Sequence CGGTTTCCCTCCCGAGAGCAACTACCTCTTTCTGGGGGACT
Motif Score 2.595904762
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000532446.5; ENST00000358239.8; ENST00000526510.5; ENST00000537694.1; ENST00000527663.5; ENST00000312989.11; ENST00000529724.1; ENST00000376745.9
External Link RMBase: m6A_site_151212
mod ID: M6ASITE007632 Click to Show/Hide the Full List
mod site chr11:67400897-67400898:- [4]
Sequence TGACATACACGGCCAGTACTACGACCTTCTGCGACTATTTG
Motif Score 2.05260119
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000546202.5; ENST00000532446.5; ENST00000542876.1; ENST00000376745.9; ENST00000358239.8; ENST00000526510.5; ENST00000312989.11; ENST00000537694.1; ENST00000529724.1; ENST00000527663.5
External Link RMBase: m6A_site_151213
mod ID: M6ASITE007633 Click to Show/Hide the Full List
mod site chr11:67400900-67400901:- [4]
Sequence AGGTGACATACACGGCCAGTACTACGACCTTCTGCGACTAT
Motif Score 3.278136905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000546202.5; ENST00000532446.5; ENST00000542876.1; ENST00000526510.5; ENST00000358239.8; ENST00000537694.1; ENST00000527663.5; ENST00000376745.9; ENST00000312989.11; ENST00000529724.1
External Link RMBase: m6A_site_151214
mod ID: M6ASITE007634 Click to Show/Hide the Full List
mod site chr11:67400911-67400912:- [5]
Sequence CCCTGGGTCACAGGTGACATACACGGCCAGTACTACGACCT
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000542876.1; ENST00000546202.5; ENST00000358239.8; ENST00000527663.5; ENST00000526510.5; ENST00000537694.1; ENST00000529724.1; ENST00000376745.9; ENST00000532446.5; ENST00000312989.11
External Link RMBase: m6A_site_151215
mod ID: M6ASITE007635 Click to Show/Hide the Full List
mod site chr11:67400915-67400916:- [5]
Sequence GGTTCCCTGGGTCACAGGTGACATACACGGCCAGTACTACG
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000358239.8; ENST00000529724.1; ENST00000537694.1; ENST00000546202.5; ENST00000526510.5; ENST00000532446.5; ENST00000527663.5; ENST00000542876.1; ENST00000312989.11; ENST00000376745.9
External Link RMBase: m6A_site_151216
mod ID: M6ASITE007636 Click to Show/Hide the Full List
mod site chr11:67400955-67400956:- [10]
Sequence GGCCCTGGGTTCAGGTCTAGACCTTGCATCTAGCTTACCCG
Motif Score 2.876744048
Cell/Tissue List HepG2; A549; Huh7; peripheral-blood; endometrial; NB4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000537694.1; ENST00000312989.11; ENST00000358239.8; ENST00000526510.5; ENST00000527663.5; ENST00000529724.1; ENST00000546202.5; ENST00000376745.9; ENST00000532446.5; ENST00000542876.1
External Link RMBase: m6A_site_151217
mod ID: M6ASITE007637 Click to Show/Hide the Full List
mod site chr11:67401019-67401020:- [10]
Sequence CTTCCTAAAAGTGGCACTGGACCCCACAGAGTTCCTGGAGC
Motif Score 3.622404762
Cell/Tissue List HepG2; A549; Jurkat; CD4T; peripheral-blood; GSC-11; endometrial; HEC-1-A; NB4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000358239.8; ENST00000527663.5; ENST00000542876.1; ENST00000546202.5; ENST00000537694.1; ENST00000376745.9; ENST00000529724.1; ENST00000312989.11; ENST00000532446.5; ENST00000526510.5
External Link RMBase: m6A_site_151218
mod ID: M6ASITE007638 Click to Show/Hide the Full List
mod site chr11:67401476-67401477:- [3]
Sequence GCTCTTGGGGCGAGGGAGAAACCCGGGAAGCCCGGTCCAGG
Motif Score 2.185083333
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq
Transcript ID List ENST00000312989.11; ENST00000542876.1; ENST00000529724.1; ENST00000526510.5; ENST00000527663.5; ENST00000537694.1; ENST00000546202.5; ENST00000532446.5; ENST00000358239.8; ENST00000376745.9
External Link RMBase: m6A_site_151219
mod ID: M6ASITE007639 Click to Show/Hide the Full List
mod site chr11:67401753-67401754:- [3]
Sequence CAGCGAGAAGCTCAACCTGGACTCGATCATCGGGCGCCTGC
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; A549; HEK293T; H1A; H1B; hESCs; fibroblasts; H1299; MM6; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000529724.1; ENST00000376745.9; ENST00000312989.11; ENST00000537694.1; ENST00000527663.5; ENST00000546202.5; ENST00000542876.1; ENST00000358239.8
External Link RMBase: m6A_site_151220
mod ID: M6ASITE007640 Click to Show/Hide the Full List
mod site chr11:67407089-67407090:- [3]
Sequence ATTTGAGGCTCAAAAAGGGAACCCTGGAGCTGGTGAGCTAC
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; HEK293T; H1B; H1A; hESCs; fibroblasts; A549; H1299; GSC-11; HEK293A-TOA; iSLK; MSC; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000537694.1; ENST00000546202.5; ENST00000542876.1
External Link RMBase: m6A_site_151241
mod ID: M6ASITE007641 Click to Show/Hide the Full List
mod site chr11:67419454-67419455:- [3]
Sequence AGGGGAAAGGGGCCTCCTGGACACCACCCCAGGTACTGCAG
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000542876.1; ENST00000546202.5
External Link RMBase: m6A_site_151274
mod ID: M6ASITE007642 Click to Show/Hide the Full List
mod site chr11:67421011-67421012:- [3]
Sequence AGCGCGCCGCACGCCTCCAGACACAGGCCGCCGTTCAGCTC
Motif Score 2.897386905
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000542876.1; ENST00000546202.5
External Link RMBase: m6A_site_151279