Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00550)
Target Name Forkhead box protein E1 (FOXE1)
Synonyms
FKHL15; FOXE2; TITF2; TTF2: Forkhead box protein E2; Forkhead-related protein FKHL15; HFKH4; HNF-3/fork head-like protein 5; HFKL5; Thyroid transcription factor 2; TTF-2
    Click to Show/Hide
Gene Name FOXE1
Sequence
MTAESGPPPPQPEVLATVKEERGETAAGAGVPGEATGRGAGGRRRKRPLQRGKPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCFLKIPREAGRPGKGNYWALDPNAEDMFESGSFLRRRKRFKRSDLSTYPAYMHDAAAAAAAAAAAAAAAAIFPGAVPAARPPYPGAVYAGYAPPSLAAPPPVYYPAASPGPCRVFGLVPERPLSPELGPAPSGPGGSCAFASAGAPATTTGYQPAGCTGARPANPSAYAAAYAGPDGAYPQGAGSAIFAAAGRLAGPASPPAGGSSGGVETTVDFYGRTSPGQFGALGACYNPGGQLGGASAGAYHARHAAAYPGGIDRFVSAM
    Click to Show/Hide
Function
Transcription factor that binds consensus sites on a variety of gene promoters and activate their transcription. Involved in proper palate formation, most probably through the expression of MSX1 and TGFB3 genes which are direct targets of this transcription factor. Also implicated in thyroid gland morphogenesis. May indirectly play a role in cell growth and migration through the regulation of WNT5A expression. {ECO:0000269|PubMed:12165566, ECO:0000269|PubMed:16882747, ECO:0000269|PubMed:20094846, ECO:0000269|PubMed:20484477, ECO:0000269|PubMed:21177256, ECO:0000269|PubMed:24219130, ECO:0000269|PubMed:25381600, ECO:0000269|PubMed:9697705}.
    Click to Show/Hide
Gene ID 2304
HGNC ID HGNC:3806
Ensembl Gene ID ENSG00000178919
KEGG ID hsa:2304
Chromosomal Location 9q22.33
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00550)
Forkhead box protein E1 (FOXE1)
5-methylcytidine (m5C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: M5CSITE004412 Click to Show/Hide the Full List
mod site chr9:97854210-97854211:+ [1]
Sequence AACCCCAAAAAGTGGCAGAACAGCATCCGCCACAACCTCAC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m5C_site_43178
N6-methyladenosine (m6A)
In total 39 m6A sequence/site(s) in this target gene
mod ID: M6ASITE088899 Click to Show/Hide the Full List
mod site chr9:97853280-97853281:+ [2]
Sequence AGCGGTCCGCAGGGCTGGAGACCCACGCCGTGGAGAGGACC
Motif Score 2.876744048
Cell/Tissue List iSLK
Seq Type List MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830262
mod ID: M6ASITE088900 Click to Show/Hide the Full List
mod site chr9:97853298-97853299:+ [2]
Sequence AGACCCACGCCGTGGAGAGGACCAGCCTCAGGTCGCCCCGC
Motif Score 3.622404762
Cell/Tissue List iSLK
Seq Type List MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830263
mod ID: M6ASITE088901 Click to Show/Hide the Full List
mod site chr9:97853508-97853509:+ [2]
Sequence AACCTAGGCAGTAATCCTAAACTAGCGGGCACCACAGACCA
Motif Score 2.627720238
Cell/Tissue List iSLK
Seq Type List MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830264
mod ID: M6ASITE088902 Click to Show/Hide the Full List
mod site chr9:97853525-97853526:+ [2]
Sequence TAAACTAGCGGGCACCACAGACCAGCTGCAGCCACCCCAAC
Motif Score 2.876744048
Cell/Tissue List iSLK
Seq Type List MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830265
mod ID: M6ASITE088903 Click to Show/Hide the Full List
mod site chr9:97853563-97853564:+ [2]
Sequence AACCCAGGGATCACTTCCGGACCCCTCGACCGCCCGGCACC
Motif Score 3.622404762
Cell/Tissue List iSLK
Seq Type List MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830266
mod ID: M6ASITE088904 Click to Show/Hide the Full List
mod site chr9:97853596-97853597:+ [3]
Sequence CCGGCACCAGCGCGCAAGGGACCCTTCAGCCGGAGACCAGA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830267
mod ID: M6ASITE088905 Click to Show/Hide the Full List
mod site chr9:97853611-97853612:+ [3]
Sequence AAGGGACCCTTCAGCCGGAGACCAGAGTCCAGTCCCGGTCA
Motif Score 2.876744048
Cell/Tissue List HeLa; HEK293T; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830268
mod ID: M6ASITE088906 Click to Show/Hide the Full List
mod site chr9:97853732-97853733:+ [3]
Sequence CTGCACCGCGCCAGCCCCAGACCACGGACGCTGAGCCTCCA
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; HEK293T; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830269
mod ID: M6ASITE088907 Click to Show/Hide the Full List
mod site chr9:97854209-97854210:+ [4]
Sequence CAACCCCAAAAAGTGGCAGAACAGCATCCGCCACAACCTCA
Motif Score 2.951386905
Cell/Tissue List HeLa; A549; HepG2; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830270
mod ID: M6ASITE088908 Click to Show/Hide the Full List
mod site chr9:97854317-97854318:+ [4]
Sequence GCTTGACCCCAACGCGGAGGACATGTTCGAGAGCGGCAGCT
Motif Score 3.643047619
Cell/Tissue List HEK293T; HeLa; A549; HepG2; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830271
mod ID: M6ASITE088909 Click to Show/Hide the Full List
mod site chr9:97854371-97854372:+ [4]
Sequence CAAGCGCTTCAAGCGCTCGGACCTCTCCACCTACCCGGCTT
Motif Score 3.622404762
Cell/Tissue List HEK293T; HeLa; A549; HepG2; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830272
mod ID: M6ASITE088910 Click to Show/Hide the Full List
mod site chr9:97854828-97854829:+ [3]
Sequence GCTGCTGGCCGCCTGGCGGGACCCGCTTCGCCCCCAGCGGG
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; A549; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830273
mod ID: M6ASITE088911 Click to Show/Hide the Full List
mod site chr9:97854871-97854872:+ [3]
Sequence GCAGCAGTGGCGGCGTGGAGACCACGGTGGACTTCTACGGG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; A549; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830274
mod ID: M6ASITE088912 Click to Show/Hide the Full List
mod site chr9:97854881-97854882:+ [3]
Sequence CGGCGTGGAGACCACGGTGGACTTCTACGGGCGCACGTCGC
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; A549; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830275
mod ID: M6ASITE088913 Click to Show/Hide the Full List
mod site chr9:97855054-97855055:+ [3]
Sequence GAGCCAGCGTAGGGACGAAAACTCATAGACACATCGGCTGT
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830276
mod ID: M6ASITE088914 Click to Show/Hide the Full List
mod site chr9:97855062-97855063:+ [3]
Sequence GTAGGGACGAAAACTCATAGACACATCGGCTGTTCACACGT
Motif Score 2.897386905
Cell/Tissue List HeLa; HEK293T; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830277
mod ID: M6ASITE088915 Click to Show/Hide the Full List
mod site chr9:97855103-97855104:+ [3]
Sequence TCCCCGCAATCTGAGAACGAACAGGAATGGAGAGAGGACTC
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; A549; hESC-HEK293T; HepG2; fibroblasts; HEK293A-TOA; iSLK; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830278
mod ID: M6ASITE088916 Click to Show/Hide the Full List
mod site chr9:97855120-97855121:+ [3]
Sequence CGAACAGGAATGGAGAGAGGACTCAACTGGGACCCACGTGG
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830279
mod ID: M6ASITE088917 Click to Show/Hide the Full List
mod site chr9:97855131-97855132:+ [3]
Sequence GGAGAGAGGACTCAACTGGGACCCACGTGGAAAAGACCGAG
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830280
mod ID: M6ASITE088918 Click to Show/Hide the Full List
mod site chr9:97855146-97855147:+ [3]
Sequence CTGGGACCCACGTGGAAAAGACCGAGCAGGCCACAGAGGCT
Motif Score 2.876744048
Cell/Tissue List HeLa; HEK293T; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830281
mod ID: M6ASITE088919 Click to Show/Hide the Full List
mod site chr9:97855247-97855248:+ [3]
Sequence GAGGCAGCCAGAGCCCTTGGACTGGCACAGGGACCCTCGAT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; HepG2; H1B; fibroblasts; HEK293A-TOA; iSLK; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830282
mod ID: M6ASITE088920 Click to Show/Hide the Full List
mod site chr9:97855259-97855260:+ [3]
Sequence GCCCTTGGACTGGCACAGGGACCCTCGATGGAGCGAAGCCC
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; HepG2; fibroblasts; Huh7; HEK293A-TOA; iSLK; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830283
mod ID: M6ASITE088921 Click to Show/Hide the Full List
mod site chr9:97855360-97855361:+ [3]
Sequence GCGTAGTGTCAACACCAGAGACCAGGATCCAAATTGTGGGG
Motif Score 2.876744048
Cell/Tissue List HeLa; HEK293T; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830284
mod ID: M6ASITE088922 Click to Show/Hide the Full List
mod site chr9:97855412-97855413:+ [4]
Sequence GCCTTCCATGTGCTGCCGGAACTCGGGCCTTTTTACGCGGT
Motif Score 3.373380952
Cell/Tissue List HEK293T; HeLa; A549; HepG2; iSLK; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830285
mod ID: M6ASITE088923 Click to Show/Hide the Full List
mod site chr9:97855508-97855509:+ [4]
Sequence TTCTTCTTAAAGTGAGGAGGACAAATTTGCAAAAGAAATAG
Motif Score 3.643047619
Cell/Tissue List HEK293T; HeLa; A549; hESC-HEK293T; HepG2; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; MAZTER-seq; m6A-seq; m6A-CLIP/IP
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830286
mod ID: M6ASITE088924 Click to Show/Hide the Full List
mod site chr9:97855601-97855602:+ [4]
Sequence GGTTTTCCCTGTCTCTGAGAACTTGAGACCTAGCTCCGAGT
Motif Score 3.373380952
Cell/Tissue List HEK293T; HeLa; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq; m6A-CLIP/IP
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830287
mod ID: M6ASITE088925 Click to Show/Hide the Full List
mod site chr9:97855608-97855609:+ [4]
Sequence CCTGTCTCTGAGAACTTGAGACCTAGCTCCGAGTTGAACTG
Motif Score 2.876744048
Cell/Tissue List HEK293T; HeLa; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830288
mod ID: M6ASITE088926 Click to Show/Hide the Full List
mod site chr9:97855625-97855626:+ [4]
Sequence GAGACCTAGCTCCGAGTTGAACTGTGCGTCAGCACTCCAGT
Motif Score 3.373380952
Cell/Tissue List HEK293T; HeLa; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830289
mod ID: M6ASITE088927 Click to Show/Hide the Full List
mod site chr9:97855658-97855659:+ [4]
Sequence ACTCCAGTCCCATCACCTGAACCTTCAGTCTCCCCCATCTG
Motif Score 2.930744048
Cell/Tissue List HEK293T; HeLa; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830290
mod ID: M6ASITE088928 Click to Show/Hide the Full List
mod site chr9:97855699-97855700:+ [4]
Sequence TTACACTAGAGGGCTGCAGGACTCTATCCACCGCCCCCGGG
Motif Score 4.065041667
Cell/Tissue List HEK293T; HeLa; A549; HepG2; fibroblasts; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830291
mod ID: M6ASITE088929 Click to Show/Hide the Full List
mod site chr9:97855912-97855913:+ [4]
Sequence ATTATATCATAACTTATTGAACTTTTGAGCAGGACGTGCTG
Motif Score 3.373380952
Cell/Tissue List HEK293T; A549; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq; m6A-CLIP/IP
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830292
mod ID: M6ASITE088930 Click to Show/Hide the Full List
mod site chr9:97856043-97856044:+ [5]
Sequence TTGTCATCACGCAGCCCTGGACCCAAAGGGTGAACTAAAGT
Motif Score 3.622404762
Cell/Tissue List HEK293T; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830293
mod ID: M6ASITE088931 Click to Show/Hide the Full List
mod site chr9:97856056-97856057:+ [5]
Sequence GCCCTGGACCCAAAGGGTGAACTAAAGTTTAAGGAGATGAG
Motif Score 3.373380952
Cell/Tissue List HEK293T; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830294
mod ID: M6ASITE088932 Click to Show/Hide the Full List
mod site chr9:97856231-97856232:+ [5]
Sequence AAAGTGAGCTTTAGAAAGAAACTGGAATTTTAACTTCATTT
Motif Score 2.627720238
Cell/Tissue List HEK293T
Seq Type List MeRIP-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830295
mod ID: M6ASITE088933 Click to Show/Hide the Full List
mod site chr9:97856352-97856353:+ [5]
Sequence GTTTCGATTCTGGAGCAAAAACTTTCAGCATTAAATATTTC
Motif Score 2.627720238
Cell/Tissue List HEK293T; A549; Huh7; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830296
mod ID: M6ASITE088934 Click to Show/Hide the Full List
mod site chr9:97856401-97856402:+ [5]
Sequence CATTCACAGCTTTCAGATAAACTGGAGTGTTCAGATGGACT
Motif Score 2.627720238
Cell/Tissue List HEK293T; A549; Huh7; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830297
mod ID: M6ASITE088935 Click to Show/Hide the Full List
mod site chr9:97856419-97856420:+ [5]
Sequence AAACTGGAGTGTTCAGATGGACTGTTTTAATAAAAATCTTT
Motif Score 4.065041667
Cell/Tissue List HEK293T; A549; Huh7; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830298
mod ID: M6ASITE088936 Click to Show/Hide the Full List
mod site chr9:97856465-97856466:+ [5]
Sequence AGTGAGTTATGGCAAGAGAAACTCAGCCTCTTTCTGTATAA
Motif Score 2.627720238
Cell/Tissue List HEK293T; A549; Huh7; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830299
mod ID: M6ASITE088937 Click to Show/Hide the Full List
mod site chr9:97856486-97856487:+ [5]
Sequence CTCAGCCTCTTTCTGTATAAACTTAACAGGGAAGGGCTGGG
Motif Score 2.627720238
Cell/Tissue List HEK293T; A549; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000375123.4
External Link RMBase: m6A_site_830300