Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00546)

Target Name	Mid1-interacting protein 1 (MID1IP1)
Synonyms	MIG12: Gastrulation-specific G12-like protein; Mid1-interacting G12-like protein; Protein STRAIT11499; Spot 14-related protein; S14R; Spot 14-R Click to Show/Hide
Gene Name	MID1IP1
Sequence	MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLADPGLDNDVGVEVGGSGGCLEERTPPVPDSGSANGSFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPPPPAGSEEGSAWKSKDILVDLGHLEGADAGEEDLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFGNWGH Click to Show/Hide
Family	SPOT14 family
Function	Plays a role in the regulation of lipogenesis in liver. Up-regulates ACACA enzyme activity. Required for efficient lipid biosynthesis, including triacylglycerol, diacylglycerol and phospholipid. Involved in stabilization of microtubules (By similarity). {ECO:0000250}. Click to Show/Hide
Gene ID	58526
HGNC ID	HGNC:20715
Ensembl Gene ID	ENSG00000165175
KEGG ID	hsa:58526
Chromosomal Location	Xp11.4

RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00546)

Mid1-interacting protein 1 (MID1IP1)

5-methylcytidine (m5C)

In total 6 m6A sequence/site(s) in this target gene
mod ID: M5CSITE004514		Click to Show/Hide the Full List
mod site	chrX:38803040-38803041:+		[1]
Sequence	ACAGGCGTGAGCCACCGTTTCAGGCCGAGAAAAGGGATTTA
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000457894.4; ENST00000614558.2; ENST00000378474.3
External Link	RMBase: m5C_site_44740
mod ID: M5CSITE004515		Click to Show/Hide the Full List
mod site	chrX:38805944-38805945:+		[2]
Sequence	CCCGCCGCCCTGCGGTTGGGCCGGTGGAGGCCCAGGCGTTG
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000457894.4; ENST00000378474.3; ENST00000336949.6; ENST00000614558.2
External Link	RMBase: m5C_site_44741
mod ID: M5CSITE004516		Click to Show/Hide the Full List
mod site	chrX:38805945-38805946:+		[2]
Sequence	CCGCCGCCCTGCGGTTGGGCCGGTGGAGGCCCAGGCGTTGC
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000614558.2; ENST00000378474.3; ENST00000336949.6; ENST00000457894.4
External Link	RMBase: m5C_site_44742
mod ID: M5CSITE004517		Click to Show/Hide the Full List
mod site	chrX:38805954-38805955:+		[2]
Sequence	TGCGGTTGGGCCGGTGGAGGCCCAGGCGTTGCTAGGATTGC
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000336949.6; ENST00000378474.3; ENST00000457894.4; ENST00000614558.2
External Link	RMBase: m5C_site_44743
mod ID: M5CSITE004518		Click to Show/Hide the Full List
mod site	chrX:38805955-38805956:+		[2]
Sequence	GCGGTTGGGCCGGTGGAGGCCCAGGCGTTGCTAGGATTGCA
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000614558.2; ENST00000378474.3; ENST00000457894.4; ENST00000336949.6
External Link	RMBase: m5C_site_44744
mod ID: M5CSITE004519		Click to Show/Hide the Full List
mod site	chrX:38805956-38805957:+		[2]
Sequence	CGGTTGGGCCGGTGGAGGCCCAGGCGTTGCTAGGATTGCAT
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000614558.2; ENST00000457894.4; ENST00000336949.6; ENST00000378474.3
External Link	RMBase: m5C_site_44745

N6-methyladenosine (m6A)

In total 61 m6A sequence/site(s) in this target gene
mod ID: M6ASITE090811		Click to Show/Hide the Full List
mod site	chrX:38802703-38802704:+		[3]
Sequence	TTTTTGTCCCGTGGGAAAAAACTGTACTAGGGACAGAGACC
Motif Score	2.627720238
Cell/Tissue List	HeLa; HEK293T
Seq Type List	m6A-seq; DART-seq
Transcript ID List	ENST00000457894.4; ENST00000614558.2; ENST00000378474.3
External Link	RMBase: m6A_site_855978
mod ID: M6ASITE090812		Click to Show/Hide the Full List
mod site	chrX:38802715-38802716:+		[3]
Sequence	GGGAAAAAACTGTACTAGGGACAGAGACCTCTGTTAAGTTT
Motif Score	3.643047619
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000378474.3; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_855979
mod ID: M6ASITE090813		Click to Show/Hide the Full List
mod site	chrX:38802721-38802722:+		[3]
Sequence	AAACTGTACTAGGGACAGAGACCTCTGTTAAGTTTTAGAGA
Motif Score	2.876744048
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000378474.3; ENST00000457894.4; ENST00000614558.2
External Link	RMBase: m6A_site_855980
mod ID: M6ASITE090814		Click to Show/Hide the Full List
mod site	chrX:38803086-38803087:+		[3]
Sequence	AGAAGCTTGAATCTTATTGAACATAATTGTAGGACTGCCAG
Motif Score	2.951386905
Cell/Tissue List	HeLa; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000378474.3; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_855981
mod ID: M6ASITE090815		Click to Show/Hide the Full List
mod site	chrX:38803099-38803100:+		[3]
Sequence	TTATTGAACATAATTGTAGGACTGCCAGAGAGGACTGGTGG
Motif Score	4.065041667
Cell/Tissue List	HeLa; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000457894.4; ENST00000378474.3; ENST00000614558.2
External Link	RMBase: m6A_site_855982
mod ID: M6ASITE090816		Click to Show/Hide the Full List
mod site	chrX:38803112-38803113:+		[3]
Sequence	TTGTAGGACTGCCAGAGAGGACTGGTGGATGAGGAATATGG
Motif Score	4.065041667
Cell/Tissue List	HeLa; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000457894.4; ENST00000378474.3; ENST00000614558.2
External Link	RMBase: m6A_site_855983
mod ID: M6ASITE090817		Click to Show/Hide the Full List
mod site	chrX:38803139-38803140:+		[3]
Sequence	GATGAGGAATATGGCAAGGGACATGAGATGGGAAAAATTAA
Motif Score	3.643047619
Cell/Tissue List	HeLa; HEK293T; Huh7
Seq Type List	m6A-seq; DART-seq; MeRIP-seq
Transcript ID List	ENST00000614558.2; ENST00000457894.4; ENST00000378474.3
External Link	RMBase: m6A_site_855984
mod ID: M6ASITE090818		Click to Show/Hide the Full List
mod site	chrX:38803275-38803276:+		[3]
Sequence	AATGACCCAGTGCTTTAAGAACTATCTTTTGAAAGGAACAC
Motif Score	3.373380952
Cell/Tissue List	HeLa; HEK293T; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000614558.2; ENST00000378474.3; ENST00000457894.4
External Link	RMBase: m6A_site_855985
mod ID: M6ASITE090819		Click to Show/Hide the Full List
mod site	chrX:38803292-38803293:+		[3]
Sequence	AGAACTATCTTTTGAAAGGAACACTTCACACAAGCACCCTC
Motif Score	2.951386905
Cell/Tissue List	HeLa; HEK293T
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000457894.4; ENST00000614558.2; ENST00000378474.3
External Link	RMBase: m6A_site_855986
mod ID: M6ASITE090820		Click to Show/Hide the Full List
mod site	chrX:38803325-38803326:+		[3]
Sequence	GCACCCTCAAAAATAATTAGACACCTCCCCATTTCTCTGTT
Motif Score	2.897386905
Cell/Tissue List	HeLa; HEK293T; A549; HEK293A-TOA
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000614558.2; ENST00000457894.4; ENST00000378474.3
External Link	RMBase: m6A_site_855987
mod ID: M6ASITE090821		Click to Show/Hide the Full List
mod site	chrX:38803358-38803359:+		[3]
Sequence	TCTCTGTTAAATGGTGAAAGACACCCAAGACTAGACCTAAC
Motif Score	2.897386905
Cell/Tissue List	HeLa; HEK293T; hESCs; A549; HEK293A-TOA
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000378474.3; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_855988
mod ID: M6ASITE090822		Click to Show/Hide the Full List
mod site	chrX:38803367-38803368:+		[3]
Sequence	AATGGTGAAAGACACCCAAGACTAGACCTAACTACTGTCAC
Motif Score	3.319380952
Cell/Tissue List	HeLa; HEK293T; hESCs; A549; HEK293A-TOA
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000378474.3; ENST00000457894.4; ENST00000614558.2
External Link	RMBase: m6A_site_855989
mod ID: M6ASITE090823		Click to Show/Hide the Full List
mod site	chrX:38803372-38803373:+		[3]
Sequence	TGAAAGACACCCAAGACTAGACCTAACTACTGTCACCCTCT
Motif Score	2.876744048
Cell/Tissue List	HeLa; HEK293T; hESCs; A549; HEK293A-TOA
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000378474.3; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_855990
mod ID: M6ASITE090824		Click to Show/Hide the Full List
mod site	chrX:38803461-38803462:+		[3]
Sequence	TCACTGTGTAGCCGACTTGGACAAAAATGGACTTCTCCCCA
Motif Score	3.643047619
Cell/Tissue List	HeLa; HEK293T; hESCs; fibroblasts; A549; HEK293A-TOA; MSC
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000614558.2; ENST00000457894.4; ENST00000378474.3
External Link	RMBase: m6A_site_855991
mod ID: M6ASITE090825		Click to Show/Hide the Full List
mod site	chrX:38803471-38803472:+		[3]
Sequence	GCCGACTTGGACAAAAATGGACTTCTCCCCATTGCCACTTG
Motif Score	4.065041667
Cell/Tissue List	HeLa; HEK293T; A549; hESCs; fibroblasts; HEK293A-TOA; MSC; TIME
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000378474.3; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_855992
mod ID: M6ASITE090826		Click to Show/Hide the Full List
mod site	chrX:38803611-38803612:+		[4]
Sequence	GAGGGAGGCAAAAGCCTCTGACGCTCCCCTCCCCCCATAGC
Motif Score	2.833690476
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000378474.3; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_855993
mod ID: M6ASITE090827		Click to Show/Hide the Full List
mod site	chrX:38803769-38803770:+		[5]
Sequence	TCCCCGACGGCTAATAATAAACCCGGGTTCCTGTTTCCCGG
Motif Score	2.185083333
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000457894.4; ENST00000378474.3; ENST00000614558.2; ENST00000336949.6
External Link	RMBase: m6A_site_855994
mod ID: M6ASITE090828		Click to Show/Hide the Full List
mod site	chrX:38804210-38804211:+		[3]
Sequence	GGGGGAGGCGGGAGGAGGAGACACCAGGGGTGGCCCTGAGC
Motif Score	2.897386905
Cell/Tissue List	HeLa; HEK293T; A549; HepG2; U2OS; H1B; H1A; LCLs; MT4; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000457894.4; ENST00000378474.3; ENST00000336949.6; ENST00000614558.2
External Link	RMBase: m6A_site_855997
mod ID: M6ASITE090829		Click to Show/Hide the Full List
mod site	chrX:38804251-38804252:+		[3]
Sequence	GCCGGCGACACCTTTCCTGGACTATAAATTGAGCACCTGGG
Motif Score	4.065041667
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List	ENST00000614558.2; ENST00000378474.3; ENST00000457894.4; ENST00000336949.6
External Link	RMBase: m6A_site_855998
mod ID: M6ASITE090830		Click to Show/Hide the Full List
mod site	chrX:38804367-38804368:+		[3]
Sequence	AGCAGCCGCTTGCAGCGAGAACACTGAATTGCCAACGAGCA
Motif Score	2.951386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; fibroblasts; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000457894.4; ENST00000336949.6; ENST00000378474.3; ENST00000614558.2
External Link	RMBase: m6A_site_855999
mod ID: M6ASITE090832		Click to Show/Hide the Full List
mod site	chrX:38804369-38804370:+		[4]
Sequence	CAGCCGCTTGCAGCGAGAACACTGAATTGCCAACGAGCAGG
Motif Score	2.506922619
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000336949.6; ENST00000614558.2; ENST00000378474.3; ENST00000457894.4
External Link	RMBase: m6A_site_856000
mod ID: M6ASITE090833		Click to Show/Hide the Full List
mod site	chrX:38804822-38804823:+		[6]
Sequence	GGAGTGCCGGGAATCCCGCCACACCGGCTATAGCCAGGCCC
Motif Score	2.053113095
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000614558.2; ENST00000378474.3; ENST00000336949.6; ENST00000457894.4
External Link	RMBase: m6A_site_856001
mod ID: M6ASITE090834		Click to Show/Hide the Full List
mod site	chrX:38804962-38804963:+		[6]
Sequence	CACCATGATGCAAATCTGCGACACCTACAACCAGAAGCACT
Motif Score	2.865571429
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000614558.2; ENST00000457894.4; ENST00000336949.6; ENST00000378474.3
External Link	RMBase: m6A_site_856002
mod ID: M6ASITE090835		Click to Show/Hide the Full List
mod site	chrX:38804968-38804969:+		[6]
Sequence	GATGCAAATCTGCGACACCTACAACCAGAAGCACTCGCTCT
Motif Score	2.078666667
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000614558.2; ENST00000336949.6; ENST00000378474.3; ENST00000457894.4
External Link	RMBase: m6A_site_856003
mod ID: M6ASITE090836		Click to Show/Hide the Full List
mod site	chrX:38804992-38804993:+		[7]
Sequence	CCAGAAGCACTCGCTCTTTAACGCCATGAATCGCTTCATTG
Motif Score	2.142029762
Cell/Tissue List	A549
Seq Type List	m6A-CLIP/IP
Transcript ID List	ENST00000336949.6; ENST00000614558.2; ENST00000457894.4; ENST00000378474.3
External Link	RMBase: m6A_site_856004
mod ID: M6ASITE090837		Click to Show/Hide the Full List
mod site	chrX:38805022-38805023:+		[3]
Sequence	TCGCTTCATTGGCGCCGTGAACAACATGGACCAGACGGTGA
Motif Score	2.951386905
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1B; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000457894.4; ENST00000336949.6; ENST00000614558.2; ENST00000378474.3
External Link	RMBase: m6A_site_856005
mod ID: M6ASITE090838		Click to Show/Hide the Full List
mod site	chrX:38805025-38805026:+		[6]
Sequence	CTTCATTGGCGCCGTGAACAACATGGACCAGACGGTGATGG
Motif Score	2.173910714
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000378474.3; ENST00000336949.6; ENST00000457894.4; ENST00000614558.2
External Link	RMBase: m6A_site_856006
mod ID: M6ASITE090839		Click to Show/Hide the Full List
mod site	chrX:38805031-38805032:+		[3]
Sequence	TGGCGCCGTGAACAACATGGACCAGACGGTGATGGTGCCCA
Motif Score	3.622404762
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1B; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; NB4; AML
Seq Type List	m6A-seq; MeRIP-seq; miCLIP
Transcript ID List	ENST00000336949.6; ENST00000614558.2; ENST00000378474.3; ENST00000457894.4
External Link	RMBase: m6A_site_856007
mod ID: M6ASITE090840		Click to Show/Hide the Full List
mod site	chrX:38805091-38805092:+		[3]
Sequence	CCTGGCTGACCCCGGGTTAGACAACGATGTTGGCGTGGAGG
Motif Score	2.897386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000614558.2; ENST00000457894.4; ENST00000378474.3; ENST00000336949.6
External Link	RMBase: m6A_site_856008
mod ID: M6ASITE090841		Click to Show/Hide the Full List
mod site	chrX:38805144-38805145:+		[4]
Sequence	GCGGCTGCCTGGAGGAGCGCACGCCCCCAGTCCCCGACTCG
Motif Score	2.80452381
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000336949.6; ENST00000457894.4; ENST00000378474.3; ENST00000614558.2
External Link	RMBase: m6A_site_856009
mod ID: M6ASITE090842		Click to Show/Hide the Full List
mod site	chrX:38805202-38805203:+		[3]
Sequence	CTTTTTCGCGCCCTCTCGGGACATGTACAGCCACTACGTGC
Motif Score	3.643047619
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; GSCs; NB4; AML
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP; miCLIP
Transcript ID List	ENST00000378474.3; ENST00000457894.4; ENST00000336949.6; ENST00000614558.2
External Link	RMBase: m6A_site_856010
mod ID: M6ASITE090843		Click to Show/Hide the Full List
mod site	chrX:38805244-38805245:+		[6]
Sequence	TCTCAAGTCCATCCGCAACGACATCGAGTGGGGGGTCCTGC
Motif Score	2.865571429
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000378474.3; ENST00000457894.4; ENST00000336949.6; ENST00000614558.2
External Link	RMBase: m6A_site_856011
mod ID: M6ASITE090844		Click to Show/Hide the Full List
mod site	chrX:38805319-38805320:+		[3]
Sequence	CAGTGCCTGGAAGTCCAAGGACATCCTGGTGGACCTGGGCC
Motif Score	3.643047619
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List	ENST00000336949.6; ENST00000457894.4; ENST00000378474.3; ENST00000614558.2
External Link	RMBase: m6A_site_856012
mod ID: M6ASITE090845		Click to Show/Hide the Full List
mod site	chrX:38805331-38805332:+		[3]
Sequence	GTCCAAGGACATCCTGGTGGACCTGGGCCACTTGGAGGGTG
Motif Score	3.622404762
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4; AML
Seq Type List	m6A-seq; MeRIP-seq; miCLIP
Transcript ID List	ENST00000336949.6; ENST00000614558.2; ENST00000378474.3; ENST00000457894.4
External Link	RMBase: m6A_site_856013
mod ID: M6ASITE090846		Click to Show/Hide the Full List
mod site	chrX:38805370-38805371:+		[3]
Sequence	TGCGGACGCCGGCGAAGAAGACCTGGAACAGCAGTTCCACT
Motif Score	2.876744048
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List	ENST00000614558.2; ENST00000378474.3; ENST00000457894.4; ENST00000336949.6
External Link	RMBase: m6A_site_856014
mod ID: M6ASITE090847		Click to Show/Hide the Full List
mod site	chrX:38805377-38805378:+		[3]
Sequence	GCCGGCGAAGAAGACCTGGAACAGCAGTTCCACTACCACCT
Motif Score	2.951386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000378474.3; ENST00000336949.6; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_856015
mod ID: M6ASITE090848		Click to Show/Hide the Full List
mod site	chrX:38805425-38805426:+		[3]
Sequence	CTGCACACTGTGCTCTCGAAACTCACGCGCAAAGCCAACAT
Motif Score	2.627720238
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4; AML
Seq Type List	m6A-seq; MeRIP-seq; m6A-CLIP/IP; miCLIP
Transcript ID List	ENST00000336949.6; ENST00000378474.3; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_856016
mod ID: M6ASITE090849		Click to Show/Hide the Full List
mod site	chrX:38805442-38805443:+		[6]
Sequence	GAAACTCACGCGCAAAGCCAACATCCTCACTAACAGATACA
Motif Score	2.173910714
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000336949.6; ENST00000614558.2; ENST00000378474.3; ENST00000457894.4
External Link	RMBase: m6A_site_856017
mod ID: M6ASITE090850		Click to Show/Hide the Full List
mod site	chrX:38805454-38805455:+		[8]
Sequence	CAAAGCCAACATCCTCACTAACAGATACAAGCAGGAGATCG
Motif Score	2.168095238
Cell/Tissue List	HEK293; kidney; hESC-HEK293T; A549; AML
Seq Type List	m6A-REF-seq; MAZTER-seq; m6A-CLIP/IP; miCLIP
Transcript ID List	ENST00000614558.2; ENST00000336949.6; ENST00000378474.3; ENST00000457894.4
External Link	RMBase: m6A_site_856018
mod ID: M6ASITE090851		Click to Show/Hide the Full List
mod site	chrX:38805602-38805603:+		[3]
Sequence	CTGGGGGGCGGGAAGGGCAGACTGCAAACTGGGGGGCTGCG
Motif Score	3.319380952
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000614558.2; ENST00000457894.4; ENST00000378474.3; ENST00000336949.6
External Link	RMBase: m6A_site_856019
mod ID: M6ASITE090852		Click to Show/Hide the Full List
mod site	chrX:38805609-38805610:+		[3]
Sequence	GCGGGAAGGGCAGACTGCAAACTGGGGGGCTGCGTACGTGC
Motif Score	2.627720238
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000336949.6; ENST00000614558.2; ENST00000457894.4; ENST00000378474.3
External Link	RMBase: m6A_site_856020
mod ID: M6ASITE090853		Click to Show/Hide the Full List
mod site	chrX:38805624-38805625:+		[4]
Sequence	TGCAAACTGGGGGGCTGCGTACGTGCAGGAGGCGCGGTGGG
Motif Score	2.830077381
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000336949.6; ENST00000378474.3; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_856021
mod ID: M6ASITE090854		Click to Show/Hide the Full List
mod site	chrX:38805714-38805715:+		[3]
Sequence	GAGATGGGAGGGCCCAAGGAACCTCCTGGGAGGGGGCCTGC
Motif Score	2.930744048
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; MM6; Huh7; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000614558.2; ENST00000378474.3; ENST00000457894.4; ENST00000336949.6
External Link	RMBase: m6A_site_856022
mod ID: M6ASITE090855		Click to Show/Hide the Full List
mod site	chrX:38805757-38805758:+		[3]
Sequence	TCTATGTTGGTGGGAATGGGACTGGGCTGACGCCCTGCATT
Motif Score	4.065041667
Cell/Tissue List	HeLa; HepG2; A549; H1B; H1A; hNPCs; hESCs; GM12878; LCLs; MT4; MM6; Huh7; peripheral-blood; GSC-11; HEK293T; HEK293A-TOA; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000614558.2; ENST00000457894.4; ENST00000336949.6; ENST00000378474.3
External Link	RMBase: m6A_site_856023
mod ID: M6ASITE090856		Click to Show/Hide the Full List
mod site	chrX:38805869-38805870:+		[6]
Sequence	GGGCGCGGCGCTGGGTTGCCACACTTGGGAAAGCAGCCCGG
Motif Score	2.053113095
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000336949.6; ENST00000614558.2; ENST00000378474.3; ENST00000457894.4
External Link	RMBase: m6A_site_856024
mod ID: M6ASITE090857		Click to Show/Hide the Full List
mod site	chrX:38805871-38805872:+		[4]
Sequence	GCGCGGCGCTGGGTTGCCACACTTGGGAAAGCAGCCCGGAG
Motif Score	2.506922619
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000378474.3; ENST00000336949.6; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_856025
mod ID: M6ASITE090858		Click to Show/Hide the Full List
mod site	chrX:38806009-38806010:+		[6]
Sequence	TTGCACTATTTCTTTTTGTAACATTGGCCCTGTGTGAAGTA
Motif Score	2.168095238
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000457894.4; ENST00000378474.3; ENST00000336949.6; ENST00000614558.2
External Link	RMBase: m6A_site_856026
mod ID: M6ASITE090859		Click to Show/Hide the Full List
mod site	chrX:38806055-38806056:+		[5]
Sequence	AATCTCCTCCTTGCTCTGAAACTTCAGCGATTCCATTGTGA
Motif Score	2.627720238
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000457894.4; ENST00000614558.2; ENST00000336949.6; ENST00000378474.3
External Link	RMBase: m6A_site_856027
mod ID: M6ASITE090860		Click to Show/Hide the Full List
mod site	chrX:38806083-38806084:+		[6]
Sequence	GATTCCATTGTGATAAGCGCACAAACAGCACTGTCTGTCGG
Motif Score	2.830589286
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000457894.4; ENST00000614558.2; ENST00000378474.3; ENST00000336949.6
External Link	RMBase: m6A_site_856028
mod ID: M6ASITE090861		Click to Show/Hide the Full List
mod site	chrX:38806087-38806088:+		[3]
Sequence	CCATTGTGATAAGCGCACAAACAGCACTGTCTGTCGGTAAT
Motif Score	2.20572619
Cell/Tissue List	HeLa; MT4; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000614558.2; ENST00000378474.3; ENST00000336949.6; ENST00000457894.4
External Link	RMBase: m6A_site_856029
mod ID: M6ASITE090862		Click to Show/Hide the Full List
mod site	chrX:38806092-38806093:+		[4]
Sequence	GTGATAAGCGCACAAACAGCACTGTCTGTCGGTAATCGGTA
Motif Score	3.252583333
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000378474.3; ENST00000336949.6; ENST00000457894.4; ENST00000614558.2
External Link	RMBase: m6A_site_856030
mod ID: M6ASITE090863		Click to Show/Hide the Full List
mod site	chrX:38806137-38806138:+		[4]
Sequence	TTTATTAATGATTTTCTGTTACACTGTATAGTAGTCCTATG
Motif Score	2.07285119
Cell/Tissue List	HEK293T; hESC-HEK293T
Seq Type List	DART-seq; MAZTER-seq
Transcript ID List	ENST00000457894.4; ENST00000378474.3; ENST00000336949.6; ENST00000614558.2
External Link	RMBase: m6A_site_856031
mod ID: M6ASITE090864		Click to Show/Hide the Full List
mod site	chrX:38806252-38806253:+		[4]
Sequence	CAGCTTGTACGTAGCTTGCCACTCAGTGAAAATAATAACAT
Motif Score	2.475107143
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000457894.4; ENST00000614558.2; ENST00000378474.3; ENST00000336949.6
External Link	RMBase: m6A_site_856032
mod ID: M6ASITE090865		Click to Show/Hide the Full List
mod site	chrX:38806269-38806270:+		[6]
Sequence	GCCACTCAGTGAAAATAATAACATTATTATGAGAAAGTGGA
Motif Score	2.168095238
Cell/Tissue List	hESC-HEK293T; CD8T
Seq Type List	MAZTER-seq; m6A-CLIP/IP
Transcript ID List	ENST00000457894.4; ENST00000378474.3; ENST00000614558.2; ENST00000336949.6
External Link	RMBase: m6A_site_856033
mod ID: M6ASITE090866		Click to Show/Hide the Full List
mod site	chrX:38806289-38806290:+		[4]
Sequence	ACATTATTATGAGAAAGTGGACTTAACCGAAATGGAACCAA
Motif Score	4.065041667
Cell/Tissue List	HEK293T; fibroblasts; CD8T; A549
Seq Type List	DART-seq; m6A-seq; m6A-CLIP/IP
Transcript ID List	ENST00000457894.4; ENST00000378474.3; ENST00000336949.6; ENST00000614558.2
External Link	RMBase: m6A_site_856034
mod ID: M6ASITE090867		Click to Show/Hide the Full List
mod site	chrX:38806294-38806295:+		[4]
Sequence	ATTATGAGAAAGTGGACTTAACCGAAATGGAACCAACTGAC
Motif Score	2.147452381
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000378474.3; ENST00000336949.6; ENST00000614558.2; ENST00000457894.4
External Link	RMBase: m6A_site_856035
mod ID: M6ASITE090868		Click to Show/Hide the Full List
mod site	chrX:38806313-38806314:+		[8]
Sequence	AACCGAAATGGAACCAACTGACATTCTATCGTGTTGTACAT
Motif Score	2.859755952
Cell/Tissue List	brain; hESC-HEK293T
Seq Type List	m6A-REF-seq; MAZTER-seq
Transcript ID List	ENST00000336949.6; ENST00000378474.3; ENST00000457894.4; ENST00000614558.2
External Link	RMBase: m6A_site_856036
mod ID: M6ASITE090869		Click to Show/Hide the Full List
mod site	chrX:38806330-38806331:+		[6]
Sequence	CTGACATTCTATCGTGTTGTACATAGAATGATGAAGGGTTC
Motif Score	2.856142857
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000614558.2; ENST00000378474.3; ENST00000457894.4; ENST00000336949.6
External Link	RMBase: m6A_site_856037
mod ID: M6ASITE090870		Click to Show/Hide the Full List
mod site	chrX:38806383-38806384:+		[3]
Sequence	ATGTCTTAAATTTATTTAAAACTTTTTTTAATCCAGATGTA
Motif Score	2.627720238
Cell/Tissue List	HeLa; HEK293T
Seq Type List	m6A-seq; DART-seq
Transcript ID List	ENST00000336949.6; ENST00000457894.4; ENST00000378474.3; ENST00000614558.2
External Link	RMBase: m6A_site_856038
mod ID: M6ASITE090871		Click to Show/Hide the Full List
mod site	chrX:38806405-38806406:+		[3]
Sequence	TTTTTTTAATCCAGATGTAGACTATATTCTAAAAAATAAAA
Motif Score	3.319380952
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000378474.3; ENST00000457894.4; ENST00000336949.6; ENST00000614558.2
External Link	RMBase: m6A_site_856039
mod ID: M6ASITE090872		Click to Show/Hide the Full List
mod site	chrX:38806450-38806451:+		[3]
Sequence	AAATGTGTCAACTAAATTGGACAAGCGTCTGGTCCTCATTA
Motif Score	3.643047619
Cell/Tissue List	HeLa; hESC-HEK293T
Seq Type List	m6A-seq; MAZTER-seq
Transcript ID List	ENST00000336949.6; ENST00000457894.4; ENST00000614558.2
External Link	RMBase: m6A_site_856040

2'-O-Methylation (2'-O-Me)

In total 1 m6A sequence/site(s) in this target gene
mod ID: 2OMSITE000521		Click to Show/Hide the Full List
mod site	chrX:38805427-38805428:+		[9]
Sequence	GCACACTGTGCTCTCGAAACTCACGCGCAAAGCCAACATCC
Cell/Tissue List	HeLa
Seq Type List	Nm-seq
Transcript ID List	ENST00000614558.2; ENST00000336949.6; ENST00000457894.4; ENST00000378474.3
External Link	RMBase: Nm_site_6777

Ref 1	5-methylcytosine promotes mRNA export - NSUN2 as the methyltransferase and ALYREF as an m(5)C reader. Cell Res. 2017 May;27(5):606-625. doi: 10.1038/cr.2017.55. Epub 2017 Apr 18.
Ref 2	Transcriptome-wide profiling of multiple RNA modifications simultaneously at single-base resolution. Proc Natl Acad Sci U S A. 2019 Apr 2;116(14):6784-6789. doi: 10.1073/pnas.1817334116. Epub 2019 Mar 14.
Ref 3	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.
Ref 4	DART-seq: an antibody-free method for global m(6)A detection. Nat Methods. 2019 Dec;16(12):1275-1280. doi: 10.1038/s41592-019-0570-0. Epub 2019 Sep 23.
Ref 5	N6-methyladenosine-dependent regulation of messenger RNA stability. Nature. 2014 Jan 2;505(7481):117-20. doi: 10.1038/nature12730. Epub 2013 Nov 27.
Ref 6	Deciphering the "m(6)A Code" via Antibody-Independent Quantitative Profiling. Cell. 2019 Jul 25;178(3):731-747.e16. doi: 10.1016/j.cell.2019.06.013. Epub 2019 Jun 27.
Ref 7	A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulation. Genes Dev. 2015 Oct 1;29(19):2037-53. doi: 10.1101/gad.269415.115. Epub 2015 Sep 24.
Ref 8	Single-base mapping of m(6)A by an antibody-independent method. Sci Adv. 2019 Jul 3;5(7):eaax0250. doi: 10.1126/sciadv.aax0250. eCollection 2019 Jul.
Ref 9	Nm-seq maps 2'-O-methylation sites in human mRNA with base precision. Nat Methods. 2017 Jul;14(7):695-698. doi: 10.1038/nmeth.4294. Epub 2017 May 15.

Epigenetic Target Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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