General Information of the Epigenetic Target (ID: EPITAR00515)
Target Name Long intergenic non-protein coding RNA 261 (LINC00261)
Synonyms
bA216C10.1; HCCDR1; TCONS_00027846; ALIEN; DEANR1; onco-lncRNA-17; FALCOR; LCAL62; chromosome 20 open reading frame 56; non-protein coding RNA 261; C20orf56; NCRNA00261
    Click to Show/Hide
Gene Name LINC00261
Family Long intergenic non-protein coding RNAs
Gene ID 140828
HGNC ID HGNC:16189
Ensembl Gene ID ENSG00000259974
KEGG ID hsa:140828
Chromosomal Location 20p11.21
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00515)
Long intergenic non-protein coding RNA 261 (LINC00261)
N6-methyladenosine (m6A)
In total 49 m6A sequence/site(s) in this target gene
mod ID: M6ASITE051855 Click to Show/Hide the Full List
mod site chr20:22548905-22548906:- [1]
Sequence TGTCTCAGATGAGACTTTGGACTGTGGATTTCTAAGTTAAT
Motif Score 4.065041667
Cell/Tissue List HepG2
Seq Type List m6A-seq
Transcript ID List ENST00000420070.1; rmsk_5088090
External Link RMBase: m6A_site_525084
mod ID: M6ASITE051856 Click to Show/Hide the Full List
mod site chr20:22548912-22548913:- [1]
Sequence CTTGCCTTGTCTCAGATGAGACTTTGGACTGTGGATTTCTA
Motif Score 3.319380952
Cell/Tissue List HepG2
Seq Type List m6A-seq
Transcript ID List rmsk_5088090; ENST00000420070.1
External Link RMBase: m6A_site_525085
mod ID: M6ASITE051857 Click to Show/Hide the Full List
mod site chr20:22548933-22548934:- [2]
Sequence CAGGTTCATAGGTGGAAGGGACTTGCCTTGTCTCAGATGAG
Motif Score 4.065041667
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List rmsk_5088090; ENST00000420070.1
External Link RMBase: m6A_site_525086
mod ID: M6ASITE051858 Click to Show/Hide the Full List
mod site chr20:22560627-22560628:- [3]
Sequence TTCGATGGCATCATGAAAAGACAAAAAAATCCTATAAAATA
Motif Score 2.897386905
Cell/Tissue List liver; Huh7
Seq Type List m6A-REF-seq; MeRIP-seq
Transcript ID List ENST00000564492.1; ENST00000420070.1; ENST00000638550.1
External Link RMBase: m6A_site_525087
mod ID: M6ASITE051859 Click to Show/Hide the Full List
mod site chr20:22560695-22560696:- [4]
Sequence GTGTGTGTTTGTGTTTTTGGACTTGTGTGGAGAATGAAGAA
Motif Score 4.065041667
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000564492.1; ENST00000420070.1; ENST00000638550.1
External Link RMBase: m6A_site_525088
mod ID: M6ASITE051860 Click to Show/Hide the Full List
mod site chr20:22560826-22560827:- [2]
Sequence GTGCCCACAGCAGACTTAAGACTGCCTCTAAAATGTCCATG
Motif Score 3.319380952
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1; ENST00000609300.1; ENST00000420070.1
External Link RMBase: m6A_site_525089
mod ID: M6ASITE051861 Click to Show/Hide the Full List
mod site chr20:22560833-22560834:- [2]
Sequence CATGCCTGTGCCCACAGCAGACTTAAGACTGCCTCTAAAAT
Motif Score 3.319380952
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000420070.1; ENST00000638550.1; ENST00000609300.1; ENST00000564492.1
External Link RMBase: m6A_site_525090
mod ID: M6ASITE051862 Click to Show/Hide the Full List
mod site chr20:22562154-22562155:- [3]
Sequence TCCTTTGGCCAGATAAAAGCACAGCTGCAGCATTGCAGATA
Motif Score 2.830589286
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000564492.1; ENST00000638550.1; ENST00000609300.1
External Link RMBase: m6A_site_525091
mod ID: M6ASITE051863 Click to Show/Hide the Full List
mod site chr20:22562269-22562270:- [4]
Sequence GATGGGAATGAACAGTTTGAACTATTTGCTCAGCAGAAGGG
Motif Score 3.373380952
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000564492.1; ENST00000638550.1; ENST00000609300.1
External Link RMBase: m6A_site_525092
mod ID: M6ASITE051864 Click to Show/Hide the Full List
mod site chr20:22562278-22562279:- [4]
Sequence AGAATAGAAGATGGGAATGAACAGTTTGAACTATTTGCTCA
Motif Score 2.951386905
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000564492.1; ENST00000609300.1; ENST00000638550.1
External Link RMBase: m6A_site_525093
mod ID: M6ASITE051865 Click to Show/Hide the Full List
mod site chr20:22562314-22562315:- [4]
Sequence AATGAAATGCAAGGGCACAAACAATGTACCAGGGAGAGAAT
Motif Score 2.20572619
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000609300.1; ENST00000564492.1
External Link RMBase: m6A_site_525094
mod ID: M6ASITE051866 Click to Show/Hide the Full List
mod site chr20:22562374-22562375:- [4]
Sequence GATGGCTAGCCCTTTTCTGGACTGTTTGCTTATAGGCCCAG
Motif Score 4.065041667
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000564492.1; ENST00000638550.1; ENST00000609300.1
External Link RMBase: m6A_site_525095
mod ID: M6ASITE051867 Click to Show/Hide the Full List
mod site chr20:22562459-22562460:- [5]
Sequence AATTCAGGACACTGACATAAACTCTCCAGATCTTTGACAGC
Motif Score 2.627720238
Cell/Tissue List A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1; ENST00000609300.1
External Link RMBase: m6A_site_525096
mod ID: M6ASITE051868 Click to Show/Hide the Full List
mod site chr20:22562471-22562472:- [6]
Sequence CTTAAAGCAATTAATTCAGGACACTGACATAAACTCTCCAG
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T; A549; Huh7
Seq Type List MAZTER-seq; m6A-seq; MeRIP-seq
Transcript ID List ENST00000564492.1; ENST00000638550.1; ENST00000609300.1
External Link RMBase: m6A_site_525097
mod ID: M6ASITE051869 Click to Show/Hide the Full List
mod site chr20:22562521-22562522:- [6]
Sequence TATTAATAAACATCTTTTGGACATTTGGTAGCCCGTGGAGC
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T; A549; Huh7
Seq Type List MAZTER-seq; m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000609300.1; ENST00000564492.1
External Link RMBase: m6A_site_525098
mod ID: M6ASITE051870 Click to Show/Hide the Full List
mod site chr20:22563337-22563338:- [2]
Sequence TGGGTAAACTAGGGCAAAAGACCTGATATCGTCTGCAGGGT
Motif Score 2.876744048
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1; ENST00000609300.1
External Link RMBase: m6A_site_525099
mod ID: M6ASITE051871 Click to Show/Hide the Full List
mod site chr20:22563350-22563351:- [2]
Sequence CCAGACTGCACTCTGGGTAAACTAGGGCAAAAGACCTGATA
Motif Score 2.627720238
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000609300.1; ENST00000564492.1
External Link RMBase: m6A_site_525100
mod ID: M6ASITE051872 Click to Show/Hide the Full List
mod site chr20:22563366-22563367:- [2]
Sequence TGGGAGAAACATTGACCCAGACTGCACTCTGGGTAAACTAG
Motif Score 3.319380952
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000609300.1; ENST00000564492.1
External Link RMBase: m6A_site_525101
mod ID: M6ASITE051873 Click to Show/Hide the Full List
mod site chr20:22563378-22563379:- [2]
Sequence AGGAGCTTTGGTTGGGAGAAACATTGACCCAGACTGCACTC
Motif Score 2.20572619
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000609300.1; ENST00000564492.1; ENST00000638550.1
External Link RMBase: m6A_site_525102
mod ID: M6ASITE051874 Click to Show/Hide the Full List
mod site chr20:22563550-22563551:- [6]
Sequence TTTTGAGGACTGTGTGCTTCACAAGCTGGGCGTTTGCTGCA
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000609300.1; ENST00000564492.1; ENST00000638550.1
External Link RMBase: m6A_site_525103
mod ID: M6ASITE051875 Click to Show/Hide the Full List
mod site chr20:22563562-22563563:- [2]
Sequence TCTCTCCTTCCCTTTTGAGGACTGTGTGCTTCACAAGCTGG
Motif Score 4.065041667
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000609300.1; ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525104
mod ID: M6ASITE051876 Click to Show/Hide the Full List
mod site chr20:22563586-22563587:- [2]
Sequence TCAACCCTAAAGTGCATGGAACCATCTCTCCTTCCCTTTTG
Motif Score 2.930744048
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000609300.1; ENST00000564492.1; ENST00000638550.1
External Link RMBase: m6A_site_525105
mod ID: M6ASITE051877 Click to Show/Hide the Full List
mod site chr20:22563632-22563633:- [2]
Sequence AAAGGCATACAAGGAATGGAACCCAACCTGTTTAAAGTAAT
Motif Score 2.930744048
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1; ENST00000609300.1
External Link RMBase: m6A_site_525106
mod ID: M6ASITE051878 Click to Show/Hide the Full List
mod site chr20:22563644-22563645:- [6]
Sequence ATTGGAGCAAAGAAAGGCATACAAGGAATGGAACCCAACCT
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000638550.1; ENST00000609300.1; ENST00000564492.1
External Link RMBase: m6A_site_525107
mod ID: M6ASITE051879 Click to Show/Hide the Full List
mod site chr20:22563721-22563722:- [2]
Sequence AAAAAAGGGAATTAAGGAGGACCCATGGCATGGCTAATGGG
Motif Score 3.622404762
Cell/Tissue List HepG2; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1; ENST00000609300.1
External Link RMBase: m6A_site_525108
mod ID: M6ASITE051880 Click to Show/Hide the Full List
mod site chr20:22563822-22563823:- [2]
Sequence GAACACAACAGGGCACACAAACAGCCACAGCACCCTCAACA
Motif Score 2.20572619
Cell/Tissue List HepG2; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000609300.1; ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525109
mod ID: M6ASITE051881 Click to Show/Hide the Full List
mod site chr20:22563840-22563841:- [2]
Sequence CTTTCCTCGAAGAGCCCTGAACACAACAGGGCACACAAACA
Motif Score 2.951386905
Cell/Tissue List HepG2; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000564492.1; ENST00000609300.1; ENST00000638550.1
External Link RMBase: m6A_site_525110
mod ID: M6ASITE051882 Click to Show/Hide the Full List
mod site chr20:22563905-22563906:- [2]
Sequence CCTCCCTTACAGGAAAGTGAACAGCAACCAAGGTGAGCCCA
Motif Score 2.951386905
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000609300.1; ENST00000564492.1; ENST00000638550.1
External Link RMBase: m6A_site_525111
mod ID: M6ASITE051883 Click to Show/Hide the Full List
mod site chr20:22563928-22563929:- [2]
Sequence CTATACAACGTTGGAAATGAACCCCTCCCTTACAGGAAAGT
Motif Score 2.930744048
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000609300.1; ENST00000564492.1
External Link RMBase: m6A_site_525112
mod ID: M6ASITE051884 Click to Show/Hide the Full List
mod site chr20:22564009-22564010:- [2]
Sequence TGACCGGAAAATATTCACAAACTCAGAGTGATTGTTTGGGG
Motif Score 2.627720238
Cell/Tissue List HepG2; A549; Huh7
Seq Type List m6A-seq; m6A-CLIP/IP; MeRIP-seq
Transcript ID List ENST00000609300.1; ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525113
mod ID: M6ASITE051885 Click to Show/Hide the Full List
mod site chr20:22564067-22564068:- [2]
Sequence CTGAATCTAACAATGAATAAACAATGAAGAGTAGCTAATTT
Motif Score 2.20572619
Cell/Tissue List HepG2; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000609300.1; ENST00000564492.1
External Link RMBase: m6A_site_525114
mod ID: M6ASITE051886 Click to Show/Hide the Full List
mod site chr20:22564131-22564132:- [3]
Sequence CCCTAAGAGCTGAAGCTGTGACAATCACGCTGCCATGGTAG
Motif Score 2.859755952
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000564492.1; ENST00000609300.1; ENST00000638550.1
External Link RMBase: m6A_site_525115
mod ID: M6ASITE051887 Click to Show/Hide the Full List
mod site chr20:22564215-22564216:- [2]
Sequence AAATCTTGCTGAACCAATAGACCAACAGCCATTAACATTTG
Motif Score 2.876744048
Cell/Tissue List HepG2; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000564492.1; ENST00000609300.1; ENST00000638550.1
External Link RMBase: m6A_site_525116
mod ID: M6ASITE051888 Click to Show/Hide the Full List
mod site chr20:22564223-22564224:- [2]
Sequence GAATTGCAAAATCTTGCTGAACCAATAGACCAACAGCCATT
Motif Score 2.930744048
Cell/Tissue List HepG2; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000609300.1; ENST00000564492.1; ENST00000638550.1
External Link RMBase: m6A_site_525117
mod ID: M6ASITE051889 Click to Show/Hide the Full List
mod site chr20:22564250-22564251:- [2]
Sequence GAAGGGAAGGAGGTCTGTGAACATCAGGAATTGCAAAATCT
Motif Score 2.951386905
Cell/Tissue List HepG2; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000609300.1; ENST00000564492.1; ENST00000638550.1
External Link RMBase: m6A_site_525118
mod ID: M6ASITE051890 Click to Show/Hide the Full List
mod site chr20:22564361-22564362:- [2]
Sequence AGAGTTTTCAACAAATATAAACTGAGGAGTGGAGCACAGCA
Motif Score 2.627720238
Cell/Tissue List HepG2; A549; Huh7; endometrial
Seq Type List m6A-seq; m6A-CLIP/IP; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525119
mod ID: M6ASITE051891 Click to Show/Hide the Full List
mod site chr20:22564392-22564393:- [2]
Sequence CTGCATCAGATTGCTCCTGGACACTTTCCTCAGAGTTTTCA
Motif Score 3.643047619
Cell/Tissue List HepG2; A549; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525120
mod ID: M6ASITE051892 Click to Show/Hide the Full List
mod site chr20:22564535-22564536:- [2]
Sequence GCTTATTTACAGCTACTGGAACAAAAAGATGAAATGAATAA
Motif Score 2.951386905
Cell/Tissue List HepG2; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525121
mod ID: M6ASITE051893 Click to Show/Hide the Full List
mod site chr20:22564559-22564560:- [2]
Sequence ACATCTTACACTTTCTCTAGACTTGCTTATTTACAGCTACT
Motif Score 3.319380952
Cell/Tissue List HepG2; A549; Huh7
Seq Type List m6A-seq; m6A-CLIP/IP; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525122
mod ID: M6ASITE051894 Click to Show/Hide the Full List
mod site chr20:22564579-22564580:- [3]
Sequence CTGCATAACTCTTCTTGACCACATCTTACACTTTCTCTAGA
Motif Score 2.053113095
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525123
mod ID: M6ASITE051895 Click to Show/Hide the Full List
mod site chr20:22564614-22564615:- [2]
Sequence GGAAGGTGTTCTCTTTTCAAACAAAAGTCTAATGACTGCAT
Motif Score 2.20572619
Cell/Tissue List HepG2; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525124
mod ID: M6ASITE051896 Click to Show/Hide the Full List
mod site chr20:22564645-22564646:- [2]
Sequence AAATATAGGACCTTTTCAAAACATGCCTTCAGGAAGGTGTT
Motif Score 2.20572619
Cell/Tissue List HepG2; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525125
mod ID: M6ASITE051897 Click to Show/Hide the Full List
mod site chr20:22564656-22564657:- [2]
Sequence TTCTGTCATGAAAATATAGGACCTTTTCAAAACATGCCTTC
Motif Score 3.622404762
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000564492.1; ENST00000638550.1
External Link RMBase: m6A_site_525126
mod ID: M6ASITE051898 Click to Show/Hide the Full List
mod site chr20:22564918-22564919:- [3]
Sequence TTCTGAGGCCACTTAGCAAGACATTTTCCAGCATGAGCAGG
Motif Score 2.897386905
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000564492.1; ENST00000638550.1
External Link RMBase: m6A_site_525127
mod ID: M6ASITE051899 Click to Show/Hide the Full List
mod site chr20:22565046-22565047:- [4]
Sequence TAATAATACCTTTTTGAAAAACTCAGTTTCTCCTGTTTACT
Motif Score 2.627720238
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525128
mod ID: M6ASITE051900 Click to Show/Hide the Full List
mod site chr20:22565072-22565073:- [4]
Sequence CTAAGACATGATCACTAAAAACATTATAATAATACCTTTTT
Motif Score 2.20572619
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525129
mod ID: M6ASITE051901 Click to Show/Hide the Full List
mod site chr20:22565087-22565088:- [4]
Sequence ATCAAGATGGTTCAACTAAGACATGATCACTAAAAACATTA
Motif Score 2.897386905
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000564492.1; ENST00000638550.1
External Link RMBase: m6A_site_525130
mod ID: M6ASITE051902 Click to Show/Hide the Full List
mod site chr20:22566685-22566686:- [3]
Sequence GTCTTTGGCTTCATCAATTCACAGGTCAGTGTGCAGAGATT
Motif Score 2.047297619
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525131
mod ID: M6ASITE051903 Click to Show/Hide the Full List
mod site chr20:22566717-22566718:- [4]
Sequence AAGCAAAGGGAGAGAAATGGACTTCACCAGTGGTCTTTGGC
Motif Score 4.065041667
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000638550.1; ENST00000564492.1
External Link RMBase: m6A_site_525132