General Information of the Epigenetic Target (ID: EPITAR00466)
Target Name UBX domain-containing protein 1 (UBXN1)
Synonyms
SAPK substrate protein 1; UBA/UBX 33.3 kDa protein
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Gene Name UBXN1
Sequence
MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQTKRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKAEELAARQRVREKIERDKAERAKKYGGSVGSQPPPVAPEPGPVPSSPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVLIVAKKCPS
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Function
Ubiquitin-binding protein that plays a role in the modulation of innate immune response. Blocks both the RIG-I-like receptors (RLR) and NF-kappa-B pathways. Following viral infection, UBXN1 is induced and recruited to the RLR component MAVS. In turn, interferes with MAVS oligomerization, and disrupts the MAVS/TRAF3/TRAF6 signalosome. This function probably serves as a brake to prevent excessive RLR signaling . Interferes with the TNFalpha-triggered NF-kappa-B pathway by interacting with cellular inhibitors of apoptosis proteins (cIAPs) and thereby inhibiting their recruitment to TNFR1. Prevents also the activation of NF-kappa-B by associating with CUL1 and thus inhibiting NF-kappa-B inhibitor alpha/NFKBIA degradation that remains bound to NF-kappa-B. Interacts with the BRCA1-BARD1 heterodimer and regulates its activity. Specifically binds 'Lys-6'-linked polyubiquitin chains. Interaction with autoubiquitinated BRCA1 leads to the inhibition of the E3 ubiquitin-protein ligase activity of the BRCA1-BARD1 heterodimer. Component of a complex required to couple deglycosylation and proteasome-mediated degradation of misfolded proteins in the endoplasmic reticulum that are retrotranslocated in the cytosol.
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Gene ID 51035
HGNC ID HGNC:18402
Ensembl Gene ID ENSG00000162191
KEGG ID hsa:51035
Chromosomal Location 11q12.3
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00466)
UBX domain-containing protein 1 (UBXN1)
N1-methyladenosine (m1A)
In total 1 m6A sequence/site(s) in this target gene
mod ID: M1ASITE000016 Click to Show/Hide the Full List
mod site chr11:62679094-62679095:- [1]
Sequence GTGACCCAAACAGATCCGGCACTTCCGCTTCCCCTCGGCTT
Cell/Tissue List HEK293T
Seq Type List m1A-MAP-seq
Transcript ID List ENST00000436354.2; ENST00000616865.4
External Link RMBase: m1A_site_195
5-methylcytidine (m5C)
In total 2 m6A sequence/site(s) in this target gene
mod ID: M5CSITE005171 Click to Show/Hide the Full List
mod site chr11:62679024-62679025:-
Sequence GAGCCGGGTGAGAGAGCGAGCGCCCGTCGGCGGGTGTCGAG
Cell/Tissue List muscle
Seq Type List Bisulfite-seq
Transcript ID List ENST00000534176.1; ENST00000532904.5; ENST00000436354.2; ENST00000528907.5; ENST00000529640.5; ENST00000527421.5; ENST00000294119.6; ENST00000531056.5; ENST00000616865.4; ENST00000531625.1; ENST00000533476.5; ENST00000524762.5; ENST00000301935.9; ENST00000525717.5; ENST00000533908.5
External Link RMBase: m5C_site_7567
mod ID: M5CSITE005172 Click to Show/Hide the Full List
mod site chr11:62679041-62679042:- [2]
Sequence TGTTCCCGGCTGCTATAGAGCCGGGTGAGAGAGCGAGCGCC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000533476.5; ENST00000534176.1; ENST00000529640.5; ENST00000294119.6; ENST00000525717.5; ENST00000527421.5; ENST00000616865.4; ENST00000532904.5; ENST00000436354.2; ENST00000531625.1; ENST00000301935.9; ENST00000531056.5; ENST00000528907.5; ENST00000533908.5; ENST00000524762.5
External Link RMBase: m5C_site_7568
N6-methyladenosine (m6A)
In total 31 m6A sequence/site(s) in this target gene
mod ID: M6ASITE006258 Click to Show/Hide the Full List
mod site chr11:62676513-62676514:- [3]
Sequence ATCTCCTTCCTAATAAATAGACCCTGAGTTCTGTACATGCC
Motif Score 2.876744048
Cell/Tissue List peripheral-blood
Seq Type List m6A-seq
Transcript ID List ENST00000616865.4; ENST00000532904.5; ENST00000529640.5; ENST00000533000.5; ENST00000301935.9; ENST00000533476.5; ENST00000294119.6
External Link RMBase: m6A_site_144540
mod ID: M6ASITE006259 Click to Show/Hide the Full List
mod site chr11:62676535-62676536:- [4]
Sequence TCATCTTTGATAAAGCACTGACATCTCCTTCCTAATAAATA
Motif Score 2.859755952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000294119.6; ENST00000301935.9; ENST00000532904.5; ENST00000533000.5; ENST00000616865.4; ENST00000529640.5; ENST00000525717.5; ENST00000533476.5
External Link RMBase: m6A_site_144541
mod ID: M6ASITE006260 Click to Show/Hide the Full List
mod site chr11:62676637-62676638:- [3]
Sequence TGTTTTCTTCCATCTTCAGGACTCGTGCCTTCTGCTGTTCT
Motif Score 4.065041667
Cell/Tissue List peripheral-blood; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000533000.5; ENST00000294119.6; ENST00000529640.5; ENST00000525717.5; ENST00000532904.5; ENST00000533476.5; ENST00000616865.4; ENST00000534176.1; ENST00000301935.9
External Link RMBase: m6A_site_144542
mod ID: M6ASITE006261 Click to Show/Hide the Full List
mod site chr11:62676682-62676683:- [5]
Sequence CAGGAATTTTGGGAGCAAAAACCAAGTATCCTTGTGGTTCA
Motif Score 2.185083333
Cell/Tissue List HeLa; HepG2; peripheral-blood; HEK293T
Seq Type List m6A-seq
Transcript ID List ENST00000616865.4; ENST00000529640.5; ENST00000533476.5; ENST00000533000.5; ENST00000532904.5; ENST00000294119.6; ENST00000301935.9; ENST00000525717.5; ENST00000534176.1
External Link RMBase: m6A_site_144543
mod ID: M6ASITE006262 Click to Show/Hide the Full List
mod site chr11:62676716-62676717:- [5]
Sequence AAAGAGAAGGGGCTTTGTGAACATGGTGCAAGGCCAGGAAT
Motif Score 2.951386905
Cell/Tissue List HeLa; HepG2; peripheral-blood; HEK293T; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000534176.1; ENST00000532904.5; ENST00000529640.5; ENST00000533476.5; ENST00000301935.9; ENST00000616865.4; ENST00000294119.6; ENST00000533000.5; ENST00000525717.5
External Link RMBase: m6A_site_144544
mod ID: M6ASITE006263 Click to Show/Hide the Full List
mod site chr11:62676778-62676779:- [6]
Sequence ACTAGAAACCAGGACTAGAAACTGGGGGAGTAGGGAGGCAT
Motif Score 2.627720238
Cell/Tissue List HepG2; peripheral-blood; HEK293T; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000294119.6; ENST00000616865.4; ENST00000301935.9; ENST00000532904.5; ENST00000533000.5; ENST00000529640.5; ENST00000525717.5; ENST00000534176.1; ENST00000533476.5
External Link RMBase: m6A_site_144545
mod ID: M6ASITE006264 Click to Show/Hide the Full List
mod site chr11:62676785-62676786:- [6]
Sequence CTGCAAGACTAGAAACCAGGACTAGAAACTGGGGGAGTAGG
Motif Score 4.065041667
Cell/Tissue List HepG2; peripheral-blood; HEK293T; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000525717.5; ENST00000294119.6; ENST00000533000.5; ENST00000301935.9; ENST00000532904.5; ENST00000533476.5; ENST00000534176.1; ENST00000529640.5; ENST00000616865.4
External Link RMBase: m6A_site_144546
mod ID: M6ASITE006265 Click to Show/Hide the Full List
mod site chr11:62676791-62676792:- [6]
Sequence GTATGGCTGCAAGACTAGAAACCAGGACTAGAAACTGGGGG
Motif Score 2.185083333
Cell/Tissue List HepG2; peripheral-blood; HEK293T; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000533000.5; ENST00000294119.6; ENST00000525717.5; ENST00000529640.5; ENST00000616865.4; ENST00000532904.5; ENST00000534176.1; ENST00000301935.9; ENST00000533476.5
External Link RMBase: m6A_site_144547
mod ID: M6ASITE006266 Click to Show/Hide the Full List
mod site chr11:62676798-62676799:- [6]
Sequence GAGCTGGGTATGGCTGCAAGACTAGAAACCAGGACTAGAAA
Motif Score 3.319380952
Cell/Tissue List HepG2; peripheral-blood; HEK293T; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000525717.5; ENST00000532904.5; ENST00000533000.5; ENST00000616865.4; ENST00000533476.5; ENST00000534176.1; ENST00000294119.6; ENST00000301935.9; ENST00000529640.5
External Link RMBase: m6A_site_144548
mod ID: M6ASITE006267 Click to Show/Hide the Full List
mod site chr11:62676838-62676839:- [7]
Sequence ACGGGCCTTCTCAGAAGCTGACATGGAGCGGCCTCTGCAGG
Motif Score 2.859755952
Cell/Tissue List brain; liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000533000.5; ENST00000616865.4; ENST00000301935.9; ENST00000533476.5; ENST00000294119.6; ENST00000532904.5; ENST00000525717.5; ENST00000534176.1; ENST00000529640.5
External Link RMBase: m6A_site_144549
mod ID: M6ASITE006268 Click to Show/Hide the Full List
mod site chr11:62676889-62676890:- [5]
Sequence GGAACTAGGTGGGGGCCAGGACCCTGTGCAATTGCTCAGTG
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; peripheral-blood; HEK293T; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000525717.5; ENST00000529640.5; ENST00000533476.5; ENST00000616865.4; ENST00000534176.1; ENST00000294119.6; ENST00000533000.5; ENST00000532904.5; ENST00000301935.9
External Link RMBase: m6A_site_144550
mod ID: M6ASITE006269 Click to Show/Hide the Full List
mod site chr11:62676906-62676907:- [5]
Sequence GAGCTCCACCGTGGGGAGGAACTAGGTGGGGGCCAGGACCC
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; peripheral-blood; HEK293T; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000525717.5; ENST00000532904.5; ENST00000525004.5; ENST00000533000.5; ENST00000533476.5; ENST00000294119.6; ENST00000529640.5; ENST00000301935.9; ENST00000616865.4; ENST00000534176.1
External Link RMBase: m6A_site_144551
mod ID: M6ASITE006270 Click to Show/Hide the Full List
mod site chr11:62676954-62676955:- [5]
Sequence CAGACGTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCT
Motif Score 2.951386905
Cell/Tissue List HeLa; peripheral-blood; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000525717.5; ENST00000529640.5; ENST00000525004.5; ENST00000532904.5; ENST00000616865.4; ENST00000301935.9; ENST00000534176.1; ENST00000294119.6; ENST00000533476.5; ENST00000533000.5
External Link RMBase: m6A_site_144552
mod ID: M6ASITE006271 Click to Show/Hide the Full List
mod site chr11:62676986-62676987:- [5]
Sequence AGGTCAGGCTGCCAGATGGGACCTCACTGACCCAGACGTTC
Motif Score 3.622404762
Cell/Tissue List HeLa; peripheral-blood; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000529640.5; ENST00000533476.5; ENST00000533000.5; ENST00000525717.5; ENST00000532904.5; ENST00000525004.5; ENST00000534176.1; ENST00000616865.4; ENST00000524762.5; ENST00000294119.6; ENST00000527421.5; ENST00000301935.9
External Link RMBase: m6A_site_144553
mod ID: M6ASITE006272 Click to Show/Hide the Full List
mod site chr11:62677484-62677485:- [6]
Sequence ATTCTTATCTTCCTCTTGGGACCCCTTTGTTCCGTGTTAAG
Motif Score 3.622404762
Cell/Tissue List HepG2; U2OS; A549; Huh7; peripheral-blood; HEK293T; endometrial; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000532904.5; ENST00000616865.4; ENST00000525717.5; ENST00000529640.5; ENST00000534176.1; ENST00000527421.5; ENST00000524762.5; ENST00000294119.6; ENST00000533476.5; ENST00000301935.9; ENST00000533000.5; ENST00000525004.5
External Link RMBase: m6A_site_144554
mod ID: M6ASITE006273 Click to Show/Hide the Full List
mod site chr11:62677802-62677803:- [5]
Sequence TAGAGAAAAGATCGAGAGGGACAAAGCAGAGAGAGCCAAGA
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; hESC-HEK293T; U2OS; H1B; H1A; hNPCs; hESCs; fibroblasts; A549; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000533000.5; ENST00000529640.5; ENST00000301935.9; ENST00000527421.5; ENST00000526919.5; ENST00000294119.6; ENST00000525004.5; ENST00000534176.1; ENST00000524762.5; ENST00000616865.4; ENST00000525717.5; ENST00000532904.5; ENST00000533476.5
External Link RMBase: m6A_site_144555
mod ID: M6ASITE006274 Click to Show/Hide the Full List
mod site chr11:62677831-62677832:- [5]
Sequence TCTTCTTGTCTACATTTCAGACAAAGAGTTAGAGAAAAGAT
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; hESC-HEK293T; U2OS; H1B; H1A; hNPCs; hESCs; fibroblasts; A549; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000526919.5; ENST00000524762.5; ENST00000527421.5; ENST00000301935.9; ENST00000294119.6; ENST00000533908.5; ENST00000525004.5; ENST00000525717.5; ENST00000529640.5; ENST00000533000.5; ENST00000532904.5; ENST00000533476.5; ENST00000534176.1; ENST00000616865.4
External Link RMBase: m6A_site_144556
mod ID: M6ASITE006275 Click to Show/Hide the Full List
mod site chr11:62678030-62678031:- [5]
Sequence CGGGAACGGCAGCGCAGGAGACAAGGGCAAGAGTTGTCAGC
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; A549; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000534176.1; ENST00000525717.5; ENST00000528907.5; ENST00000533908.5; ENST00000301935.9; ENST00000532904.5; ENST00000294119.6; ENST00000616865.4; ENST00000533476.5; ENST00000527421.5; ENST00000526919.5; ENST00000524762.5; ENST00000525004.5; ENST00000529640.5
External Link RMBase: m6A_site_144557
mod ID: M6ASITE006276 Click to Show/Hide the Full List
mod site chr11:62678140-62678141:- [5]
Sequence ACTCTGTCCATTTCTCTTGAACTGTTTTCCCTCGGCAACAC
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; HEK293T; U2OS; hNPCs; hESCs; fibroblasts; A549; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000526919.5; ENST00000525717.5; ENST00000531056.5; ENST00000524762.5; ENST00000529640.5; ENST00000616865.4; ENST00000533476.5; ENST00000532904.5; ENST00000533908.5; ENST00000527421.5; ENST00000525004.5; ENST00000294119.6; ENST00000528907.5; ENST00000534176.1; ENST00000301935.9
External Link RMBase: m6A_site_144558
mod ID: M6ASITE006277 Click to Show/Hide the Full List
mod site chr11:62678175-62678176:- [5]
Sequence CCTAATTTTGTTTATTGTAAACTTTACACCTTCCCACTCTG
Motif Score 2.627720238
Cell/Tissue List HeLa; HepG2; HEK293T; U2OS; hNPCs; A549; MT4; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000531056.5; ENST00000301935.9; ENST00000524762.5; ENST00000526919.5; ENST00000294119.6; ENST00000525717.5; ENST00000525004.5; ENST00000528907.5; ENST00000527421.5; ENST00000529640.5; ENST00000533476.5; ENST00000616865.4; ENST00000533908.5; ENST00000534176.1; ENST00000532904.5
External Link RMBase: m6A_site_144559
mod ID: M6ASITE006278 Click to Show/Hide the Full List
mod site chr11:62678266-62678267:- [8]
Sequence AGTACACGTCTGGTCAAAGAACCTTGACCTTTCCACATTTC
Motif Score 2.930744048
Cell/Tissue List A549
Seq Type List m6A-seq
Transcript ID List ENST00000301935.9; ENST00000616865.4; ENST00000294119.6; ENST00000528907.5; ENST00000436354.2; ENST00000524762.5; ENST00000531056.5; ENST00000533476.5; ENST00000534176.1; ENST00000533908.5; ENST00000527421.5; ENST00000526919.5; ENST00000532904.5; ENST00000525717.5; ENST00000529640.5; ENST00000525004.5
External Link RMBase: m6A_site_144560
mod ID: M6ASITE006279 Click to Show/Hide the Full List
mod site chr11:62678349-62678350:- [9]
Sequence AGTGAAGAGGAAAGACAGGAACAAACTAAGAGGTACAGTAA
Motif Score 2.951386905
Cell/Tissue List CD34; HepG2; hESC-HEK293T; U2OS; hNPCs; A549; Huh7; endometrial
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000534176.1; ENST00000529640.5; ENST00000525004.5; ENST00000525717.5; ENST00000616865.4; ENST00000533476.5; ENST00000527421.5; ENST00000526919.5; ENST00000436354.2; ENST00000301935.9; ENST00000533908.5; ENST00000531056.5; ENST00000528907.5; ENST00000532904.5; ENST00000524762.5; ENST00000294119.6
External Link RMBase: m6A_site_144561
mod ID: M6ASITE006280 Click to Show/Hide the Full List
mod site chr11:62678355-62678356:- [9]
Sequence GCTTTGAGTGAAGAGGAAAGACAGGAACAAACTAAGAGGTA
Motif Score 2.897386905
Cell/Tissue List CD34; HepG2; U2OS; hNPCs; A549; Huh7; HEK293T; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000616865.4; ENST00000532904.5; ENST00000294119.6; ENST00000436354.2; ENST00000528907.5; ENST00000533476.5; ENST00000525004.5; ENST00000526919.5; ENST00000524762.5; ENST00000529640.5; ENST00000534176.1; ENST00000301935.9; ENST00000525717.5; ENST00000533908.5; ENST00000531056.5; ENST00000527421.5
External Link RMBase: m6A_site_144562
mod ID: M6ASITE006281 Click to Show/Hide the Full List
mod site chr11:62678379-62678380:- [9]
Sequence TCTGCTGCCGGAGAAGGCAAACCCGCTTTGAGTGAAGAGGA
Motif Score 2.185083333
Cell/Tissue List CD34; HepG2; U2OS; hNPCs; A549; Huh7; HEK293T; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000527421.5; ENST00000528907.5; ENST00000526919.5; ENST00000529640.5; ENST00000533908.5; ENST00000616865.4; ENST00000524762.5; ENST00000532904.5; ENST00000531056.5; ENST00000301935.9; ENST00000294119.6; ENST00000525004.5; ENST00000533476.5; ENST00000436354.2; ENST00000534176.1; ENST00000525717.5
External Link RMBase: m6A_site_144563
mod ID: M6ASITE006282 Click to Show/Hide the Full List
mod site chr11:62678543-62678544:- [5]
Sequence CCTTTAGAGACTCCCCTTGGACATATCCTGGGACGGGAGCC
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; hESC-HEK293T; MM6; Huh7; peripheral-blood; GSC-11; endometrial; NB4
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000534176.1; ENST00000529640.5; ENST00000532904.5; ENST00000294119.6; ENST00000533476.5; ENST00000524762.5; ENST00000528907.5; ENST00000616865.4; ENST00000436354.2; ENST00000531056.5; ENST00000527421.5; ENST00000533908.5; ENST00000531625.1; ENST00000525717.5; ENST00000301935.9; ENST00000526919.5
External Link RMBase: m6A_site_144564
mod ID: M6ASITE006283 Click to Show/Hide the Full List
mod site chr11:62678554-62678555:- [5]
Sequence ATGTGGACGAGCCTTTAGAGACTCCCCTTGGACATATCCTG
Motif Score 3.319380952
Cell/Tissue List HeLa; CD34; HepG2; MM6; Huh7; peripheral-blood; GSC-11; HEK293T; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000524762.5; ENST00000533476.5; ENST00000294119.6; ENST00000529640.5; ENST00000534176.1; ENST00000616865.4; ENST00000525717.5; ENST00000531625.1; ENST00000528907.5; ENST00000526919.5; ENST00000301935.9; ENST00000532904.5; ENST00000533908.5; ENST00000531056.5; ENST00000527421.5; ENST00000436354.2
External Link RMBase: m6A_site_144565
mod ID: M6ASITE006284 Click to Show/Hide the Full List
mod site chr11:62678692-62678693:- [5]
Sequence GGGCATCGAGGCTGCGATGGACTGGTAAGCGCTCGTCCCGG
Motif Score 4.065041667
Cell/Tissue List HeLa; CD34; HepG2; MM6; Huh7; peripheral-blood; GSC-11; HEK293T; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000525717.5; ENST00000534176.1; ENST00000529640.5; ENST00000528907.5; ENST00000527421.5; ENST00000532904.5; ENST00000531056.5; ENST00000294119.6; ENST00000436354.2; ENST00000301935.9; ENST00000533476.5; ENST00000616865.4; ENST00000531625.1; ENST00000524762.5; ENST00000533908.5; ENST00000526919.5
External Link RMBase: m6A_site_144566
mod ID: M6ASITE006285 Click to Show/Hide the Full List
mod site chr11:62678716-62678717:- [5]
Sequence GGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGA
Motif Score 2.930744048
Cell/Tissue List HeLa; CD34; HepG2; MM6; Huh7; peripheral-blood; GSC-11; HEK293T; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000531056.5; ENST00000531625.1; ENST00000533476.5; ENST00000534176.1; ENST00000529640.5; ENST00000525717.5; ENST00000616865.4; ENST00000532904.5; ENST00000527421.5; ENST00000533908.5; ENST00000294119.6; ENST00000526919.5; ENST00000436354.2; ENST00000301935.9; ENST00000528907.5; ENST00000524762.5
External Link RMBase: m6A_site_144567
mod ID: M6ASITE006286 Click to Show/Hide the Full List
mod site chr11:62678817-62678818:- [5]
Sequence GCGGGTGTGGGGGGTCGCGGACCTGTCTCGGCCTTTGCCCC
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; peripheral-blood; HEK293T; endometrial; NB4; MM6
Seq Type List m6A-seq
Transcript ID List ENST00000528907.5; ENST00000529640.5; ENST00000531625.1; ENST00000527421.5; ENST00000534176.1; ENST00000533476.5; ENST00000436354.2; ENST00000526919.5; ENST00000533908.5; ENST00000525717.5; ENST00000524762.5; ENST00000616865.4; ENST00000294119.6; ENST00000531056.5; ENST00000301935.9; ENST00000532904.5
External Link RMBase: m6A_site_144568
mod ID: M6ASITE006287 Click to Show/Hide the Full List
mod site chr11:62678960-62678961:- [10]
Sequence TTCCCGCCCTCCTTCTCGTCACACACCAGGTCCCCGCGGAA
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000525717.5; ENST00000533908.5; ENST00000529640.5; ENST00000616865.4; ENST00000533476.5; ENST00000524762.5; ENST00000436354.2; ENST00000532904.5; ENST00000301935.9; ENST00000526919.5; ENST00000528907.5; ENST00000527421.5; ENST00000534176.1; ENST00000531056.5; ENST00000294119.6; ENST00000531625.1
External Link RMBase: m6A_site_144569
mod ID: M6ASITE006288 Click to Show/Hide the Full List
mod site chr11:62679105-62679106:- [5]
Sequence TCCGCCCCCACGTGACCCAAACAGATCCGGCACTTCCGCTT
Motif Score 2.20572619
Cell/Tissue List HeLa; A549; HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000616865.4
External Link RMBase: m6A_site_144570
Pseudouridine (Pseudo)
In total 1 m6A sequence/site(s) in this target gene
mod ID: PSESITE000324 Click to Show/Hide the Full List
mod site chr11:62676628-62676629:- [11]
Sequence CCATCTTCAGGACTCGTGCCTTCTGCTGTTCTCATTGTGGC
Transcript ID List ENST00000532904.5; ENST00000533476.5; ENST00000301935.9; ENST00000525717.5; ENST00000533000.5; ENST00000534176.1; ENST00000616865.4; ENST00000529640.5; ENST00000294119.6
External Link RMBase: Pseudo_site_889