Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00439)
Target Name E3 ubiquitin-protein ligase CHIP (STUB1)
Synonyms
Antigen NY-CO-7; CLL-associated antigen KW-8; Carboxy terminus of Hsp70-interacting protein; RING-type E3 ubiquitin transferase CHIP; STIP1 homology and U box-containing protein 1
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Gene Name STUB1
Sequence
MKGKEEKEGGARLGAGGGSPEKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQHEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY
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Function
E3 ubiquitin-protein ligase which targets misfolded chaperone substrates towards proteasomal degradation (PubMed:10330192, PubMed:11146632, PubMed:11557750, PubMed:23990462). Collaborates with ATXN3 in the degradation of misfolded chaperone substrates: ATXN3 restricting the length of ubiquitin chain attached to STUB1/CHIP substrates and preventing further chain extension (PubMed:10330192, PubMed:11146632, PubMed:11557750, PubMed:23990462). Ubiquitinates NOS1 in concert with Hsp70 and Hsp40 (PubMed:15466472). Modulates the activity of several chaperone complexes, including Hsp70, Hsc70 and Hsp90 (PubMed:10330192, PubMed:11146632, PubMed:15466472). Mediates transfer of non-canonical short ubiquitin chains to HSPA8 that have no effect on HSPA8 degradation (PubMed:11557750, PubMed:23990462). Mediates polyubiquitination of DNA polymerase beta (POLB) at 'Lys-41', 'Lys-61' and 'Lys-81', thereby playing a role in base-excision repair: catalyzes polyubiquitination by amplifying the HUWE1/ARF-BP1-dependent monoubiquitination and leading to POLB-degradation by the proteasome (PubMed:19713937). Mediates polyubiquitination of CYP3A4 (PubMed:19103148). Ubiquitinates EPHA2 and may regulate the receptor stability and activity through proteasomal degradation (PubMed:19567782). Acts as a co-chaperone for HSPA1A and HSPA1B chaperone proteins and promotes ubiquitin-mediated protein degradation (PubMed:27708256). Negatively regulates the suppressive function of regulatory T-cells (Treg) during inflammation by mediating the ubiquitination and degradation of FOXP3 in a HSPA1A/B-dependent manner (PubMed:23973223). Catalyzes monoubiquitination of SIRT6, preventing its degradation by the proteasome (PubMed:24043303). Likely mediates polyubiquitination and down-regulates plasma membrane expression of PD-L1/CD274, an immune inhibitory ligand critical for immune tolerance to self and antitumor immunity (PubMed:28813410). Negatively regulates TGF-beta signaling by modulating the basal level of SMAD3 via ubiquitin-mediated degradation (PubMed:24613385). May regulate myosin assembly in striated muscles together with UBE4B and VCP/p97 by targeting myosin chaperone UNC45B for proteasomal degradation (PubMed:17369820). Mediates ubiquitination of RIPK3 leading to its subsequent proteasome-dependent degradation (PubMed:29883609).
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Gene ID 10273
HGNC ID HGNC:11427
Ensembl Gene ID ENSG00000103266
KEGG ID hsa:10273
Chromosomal Location 16p13.3
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00439)
E3 ubiquitin-protein ligase CHIP (STUB1)
N4-acetylcytidine (ac4C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: AC4SITE000209 Click to Show/Hide the Full List
mod site chr16:681187-681188:+
Sequence TGGCCGTGTATTACACCAACCGGGCCTTGTGCTACCTGAAG
Cell/Tissue List DLD1
Seq Type List acRIP-seq
Transcript ID List ENST00000564370.5; ENST00000563505.5; ENST00000567173.5; ENST00000219548.9; ENST00000569248.5; ENST00000565677.5; ENST00000567790.1
External Link RMBase: ac4C_site_650
2'-O-Methylation (2'-O-Me)
In total 1 m6A sequence/site(s) in this target gene
mod ID: 2OMSITE000129 Click to Show/Hide the Full List
mod site chr16:682070-682071:+ [1]
Sequence TTTCTCAGGTGGATGAGAAGAGGAAGGTGAGTGTGTGTCGC
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000564316.1; ENST00000219548.9; ENST00000569248.5; ENST00000567173.5; ENST00000566408.5; ENST00000565677.5; ENST00000566181.2; ENST00000564370.5
External Link RMBase: Nm_site_2026
5-methylcytidine (m5C)
In total 8 m6A sequence/site(s) in this target gene
mod ID: M5CSITE000538 Click to Show/Hide the Full List
mod site chr16:680752-680753:+
Sequence CCGGGCCCGGGCCCGGCCGGCCCCACCGAGGGTCTGGCTCC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000565677.5; ENST00000567790.1; ENST00000567173.5; ENST00000569248.5; ENST00000219548.9; rmsk_4438057; ENST00000563505.5
External Link RMBase: m5C_site_14789
mod ID: M5CSITE000539 Click to Show/Hide the Full List
mod site chr16:681426-681427:+ [2]
Sequence CAGAGAGTGACGTGAAGCCCCCGTTCCCCAGCTTACAGCCT
Seq Type List Bisulfite-seq
Transcript ID List ENST00000565677.5; ENST00000563505.5; ENST00000566181.2; ENST00000567173.5; ENST00000569248.5; ENST00000219548.9; ENST00000566408.5; ENST00000564370.5
External Link RMBase: m5C_site_14790
mod ID: M5CSITE000540 Click to Show/Hide the Full List
mod site chr16:681427-681428:+ [2]
Sequence AGAGAGTGACGTGAAGCCCCCGTTCCCCAGCTTACAGCCTG
Seq Type List Bisulfite-seq
Transcript ID List ENST00000219548.9; ENST00000569248.5; ENST00000567173.5; ENST00000563505.5; ENST00000566181.2; ENST00000566408.5; ENST00000564370.5; ENST00000565677.5
External Link RMBase: m5C_site_14791
mod ID: M5CSITE000541 Click to Show/Hide the Full List
mod site chr16:681431-681432:+ [2]
Sequence AGTGACGTGAAGCCCCCGTTCCCCAGCTTACAGCCTGGCCA
Seq Type List Bisulfite-seq
Transcript ID List ENST00000566408.5; ENST00000569248.5; ENST00000567173.5; ENST00000565677.5; ENST00000563505.5; ENST00000564370.5; ENST00000219548.9; ENST00000566181.2
External Link RMBase: m5C_site_14792
mod ID: M5CSITE000542 Click to Show/Hide the Full List
mod site chr16:681434-681435:+ [2]
Sequence GACGTGAAGCCCCCGTTCCCCAGCTTACAGCCTGGCCAAGG
Seq Type List Bisulfite-seq
Transcript ID List ENST00000563505.5; ENST00000566181.2; ENST00000564370.5; ENST00000565677.5; ENST00000569248.5; ENST00000567173.5; ENST00000566408.5; ENST00000219548.9
External Link RMBase: m5C_site_14793
mod ID: M5CSITE000543 Click to Show/Hide the Full List
mod site chr16:681471-681472:+
Sequence AAGGAGCAGCGGCTGAACTTCGGGGACGACATCCCCAGCGC
Cell/Tissue List heart; liver; muscle
Seq Type List Bisulfite-seq
Transcript ID List ENST00000565677.5; ENST00000569248.5; ENST00000567173.5; ENST00000566408.5; ENST00000563505.5; ENST00000566181.2; ENST00000219548.9; ENST00000564370.5
External Link RMBase: m5C_site_14794
mod ID: M5CSITE000544 Click to Show/Hide the Full List
mod site chr16:681786-681787:+ [2]
Sequence CTGACCGGCTCCTGGTCAACCCCCAGGGAGCTGGAAGAGTG
Seq Type List Bisulfite-seq
Transcript ID List ENST00000565677.5; ENST00000566181.2; ENST00000219548.9; ENST00000569248.5; ENST00000566408.5; ENST00000567173.5; ENST00000563505.5; ENST00000564316.1; ENST00000564370.5
External Link RMBase: m5C_site_14795
mod ID: M5CSITE000545 Click to Show/Hide the Full List
mod site chr16:682288-682289:+ [2]
Sequence GGAGCACCTGCAGGTGAGGCCTGCGGCTGGGGGAGCAGGGC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000565677.5; ENST00000569248.5; ENST00000564316.1; ENST00000564370.5; ENST00000566408.5; ENST00000219548.9
External Link RMBase: m5C_site_14796
N6-methyladenosine (m6A)
In total 25 m6A sequence/site(s) in this target gene
mod ID: M6ASITE025257 Click to Show/Hide the Full List
mod site chr16:680266-680267:+ [3]
Sequence CCACCCTTAAGAGCGCGGGGACAGGGAACTGGAGCGTTCCT
Motif Score 3.643047619
Cell/Tissue List HepG2; Jurkat; GSC-11; HEK293T; iSLK; MSC; TREX; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000565677.5
External Link RMBase: m6A_site_299328
mod ID: M6ASITE025258 Click to Show/Hide the Full List
mod site chr16:680273-680274:+ [3]
Sequence TAAGAGCGCGGGGACAGGGAACTGGAGCGTTCCTCCCAGCC
Motif Score 3.373380952
Cell/Tissue List HepG2; Jurkat; GSC-11; HEK293T; iSLK; MSC; TREX; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000565677.5
External Link RMBase: m6A_site_299329
mod ID: M6ASITE025259 Click to Show/Hide the Full List
mod site chr16:680909-680910:+ [4]
Sequence GGGGCCCTCGACCCTTGAGGACCCCAGGTCCTAAGCCCGGA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; MM6; GSC-11; HEK293A-TOA; MSC
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000569248.5; ENST00000219548.9; ENST00000567790.1; ENST00000565677.5; ENST00000567173.5; ENST00000563505.5
External Link RMBase: m6A_site_299330
mod ID: M6ASITE025260 Click to Show/Hide the Full List
mod site chr16:680929-680930:+ [4]
Sequence ACCCCAGGTCCTAAGCCCGGACTCTCCAAAGATTTGGAAAA
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; MM6; GSC-11; HEK293A-TOA; MSC
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000567790.1; ENST00000563505.5; ENST00000567173.5; ENST00000565677.5; ENST00000569248.5; ENST00000219548.9
External Link RMBase: m6A_site_299331
mod ID: M6ASITE025261 Click to Show/Hide the Full List
mod site chr16:680949-680950:+ [4]
Sequence ACTCTCCAAAGATTTGGAAAACTTTACAAAACCAAGTGGAA
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; A549; H1B; MM6; HEK293A-TOA; MSC
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000563505.5; ENST00000569248.5; ENST00000567790.1; ENST00000565677.5; ENST00000567173.5; ENST00000219548.9
External Link RMBase: m6A_site_299332
mod ID: M6ASITE025262 Click to Show/Hide the Full List
mod site chr16:680959-680960:+ [4]
Sequence GATTTGGAAAACTTTACAAAACCAAGTGGAATCAAGCGGAT
Motif Score 2.185083333
Cell/Tissue List HeLa; HEK293T; A549; H1B; MM6; HEK293A-TOA; MSC
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000563505.5; ENST00000219548.9; ENST00000565677.5; ENST00000567173.5; ENST00000567790.1; ENST00000569248.5
External Link RMBase: m6A_site_299333
mod ID: M6ASITE025263 Click to Show/Hide the Full List
mod site chr16:681017-681018:+ [4]
Sequence CACTGTGCACAGATCCTTGGACCCAGGGGCTTTGACAACTG
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; HepG2; H1B; H1A; MM6; peripheral-blood; HEK293A-TOA; MSC; TIME; iSLK; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000565677.5; ENST00000563505.5; ENST00000567790.1; ENST00000569248.5; ENST00000567173.5; ENST00000219548.9
External Link RMBase: m6A_site_299334
mod ID: M6ASITE025264 Click to Show/Hide the Full List
mod site chr16:681042-681043:+ [4]
Sequence GGGGCTTTGACAACTGAGAAACCTAGTTTCTTGATTCTAGC
Motif Score 2.185083333
Cell/Tissue List HeLa; HEK293T; A549; HepG2; H1B; H1A; MM6; peripheral-blood; HEK293A-TOA; MSC; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000219548.9; ENST00000567790.1; ENST00000563505.5; ENST00000564370.5; ENST00000567173.5; ENST00000569248.5; ENST00000565677.5
External Link RMBase: m6A_site_299335
mod ID: M6ASITE025265 Click to Show/Hide the Full List
mod site chr16:681151-681152:+ [4]
Sequence GGCCCGGCCTTGGTCCCTAGACCCGGAACCCGCTGGTGGCC
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; MM6; peripheral-blood; HEK293A-TOA; NB4
Seq Type List m6A-seq
Transcript ID List ENST00000565677.5; ENST00000567173.5; ENST00000563505.5; ENST00000569248.5; ENST00000219548.9; ENST00000567790.1; ENST00000564370.5
External Link RMBase: m6A_site_299336
mod ID: M6ASITE025266 Click to Show/Hide the Full List
mod site chr16:681158-681159:+ [4]
Sequence CCTTGGTCCCTAGACCCGGAACCCGCTGGTGGCCGTGTATT
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; MM6; peripheral-blood; HEK293A-TOA; NB4
Seq Type List m6A-seq
Transcript ID List ENST00000565677.5; ENST00000569248.5; ENST00000563505.5; ENST00000564370.5; ENST00000567173.5; ENST00000567790.1; ENST00000219548.9
External Link RMBase: m6A_site_299337
mod ID: M6ASITE025267 Click to Show/Hide the Full List
mod site chr16:681179-681180:+ [5]
Sequence CCCGCTGGTGGCCGTGTATTACACCAACCGGGCCTTGTGCT
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000219548.9; ENST00000569248.5; ENST00000564370.5; ENST00000563505.5; ENST00000567173.5; ENST00000565677.5; ENST00000567790.1
External Link RMBase: m6A_site_299338
mod ID: M6ASITE025268 Click to Show/Hide the Full List
mod site chr16:681467-681468:+ [4]
Sequence GGCCAAGGAGCAGCGGCTGAACTTCGGGGACGACATCCCCA
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; MT4; A549; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000567173.5; ENST00000569248.5; ENST00000566181.2; ENST00000219548.9; ENST00000564370.5; ENST00000563505.5; ENST00000566408.5; ENST00000565677.5
External Link RMBase: m6A_site_299339
mod ID: M6ASITE025269 Click to Show/Hide the Full List
mod site chr16:681479-681480:+ [6]
Sequence GCGGCTGAACTTCGGGGACGACATCCCCAGCGCTCTTCGAA
Motif Score 2.865571429
Cell/Tissue List brain; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000565677.5; ENST00000566181.2; ENST00000564370.5; ENST00000563505.5; ENST00000569248.5; ENST00000566408.5; ENST00000219548.9; ENST00000567173.5
External Link RMBase: m6A_site_299340
mod ID: M6ASITE025270 Click to Show/Hide the Full List
mod site chr16:681521-681522:+ [4]
Sequence CGCGAAGAAGAAGCGCTGGAACAGCATTGAGGAGCGGCGCA
Motif Score 2.951386905
Cell/Tissue List HeLa; HepG2; MT4; A549; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000564316.1; ENST00000567173.5; ENST00000569248.5; ENST00000564370.5; ENST00000563505.5; ENST00000566408.5; ENST00000565677.5; ENST00000219548.9; ENST00000566181.2
External Link RMBase: m6A_site_299341
mod ID: M6ASITE025273 Click to Show/Hide the Full List
mod site chr16:681815-681816:+ [4]
Sequence GCTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACG
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HepG2; MT4; A549; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000567173.5; ENST00000565677.5; ENST00000566408.5; ENST00000219548.9; ENST00000566181.2; ENST00000563505.5; ENST00000564370.5; ENST00000569248.5; ENST00000564316.1
External Link RMBase: m6A_site_299344
mod ID: M6ASITE025279 Click to Show/Hide the Full List
mod site chr16:682020-682021:+ [4]
Sequence AGCACTCAACTCTTCACAGGACAAGTACATGGCGGACATGG
Motif Score 3.643047619
Cell/Tissue List HeLa; A549; MM6; Huh7; CD4T; peripheral-blood; HEK293T; TREX; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000566181.2; ENST00000564316.1; ENST00000563505.5; ENST00000565677.5; ENST00000569248.5; ENST00000564370.5; ENST00000566408.5; ENST00000567173.5; ENST00000219548.9
External Link RMBase: m6A_site_299350
mod ID: M6ASITE025280 Click to Show/Hide the Full List
mod site chr16:682035-682036:+ [4]
Sequence ACAGGACAAGTACATGGCGGACATGGACGAGCTTTTTTCTC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; hESC-HEK293T; A549; MM6; Huh7; CD4T; peripheral-blood; TREX; endometrial; NB4
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000566408.5; ENST00000564370.5; ENST00000566181.2; ENST00000565677.5; ENST00000567173.5; ENST00000569248.5; ENST00000219548.9; ENST00000564316.1; ENST00000563505.5
External Link RMBase: m6A_site_299351
mod ID: M6ASITE025284 Click to Show/Hide the Full List
mod site chr16:682171-682172:+ [4]
Sequence CCCTGTGCCACAGAAGCGAGACATCCCCGACTACCTGTGTG
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; hESC-HEK293T; A549; MM6; CD4T; peripheral-blood; endometrial; NB4
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000567173.5; ENST00000566408.5; ENST00000566181.2; ENST00000569248.5; ENST00000219548.9; ENST00000565677.5; ENST00000564316.1; ENST00000564370.5
External Link RMBase: m6A_site_299355
mod ID: M6ASITE025286 Click to Show/Hide the Full List
mod site chr16:682261-682262:+ [4]
Sequence CATCACCTACGACCGCAAGGACATCGAGGAGCACCTGCAGG
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; hESC-HEK293T; A549; MM6; Huh7; CD4T; peripheral-blood; TREX; endometrial; NB4
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000566408.5; ENST00000564370.5; ENST00000565677.5; ENST00000564316.1; ENST00000219548.9; ENST00000569248.5
External Link RMBase: m6A_site_299357
mod ID: M6ASITE025290 Click to Show/Hide the Full List
mod site chr16:682410-682411:+ [4]
Sequence CGGAGCCCCCTGACCCAGGAACAGCTCATCCCCAACTTGGC
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; kidney; A549; HepG2; H1A; H1B; GM12878; LCLs; MM6; Huh7; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-REF-seq
Transcript ID List ENST00000564370.5; ENST00000565677.5; ENST00000219548.9; ENST00000564316.1; ENST00000566408.5; ENST00000569248.5
External Link RMBase: m6A_site_299361
mod ID: M6ASITE025291 Click to Show/Hide the Full List
mod site chr16:682481-682482:+ [4]
Sequence TGAGAATGGCTGGGTGGAGGACTACTGAGGTTCCCTGCCCT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; HepG2; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000569248.5; ENST00000565677.5; ENST00000564370.5; ENST00000219548.9; ENST00000565813.1; ENST00000564316.1
External Link RMBase: m6A_site_299362
mod ID: M6ASITE025292 Click to Show/Hide the Full List
mod site chr16:682484-682485:+ [7]
Sequence GAATGGCTGGGTGGAGGACTACTGAGGTTCCCTGCCCTACC
Motif Score 2.500660714
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000564316.1; ENST00000565813.1; ENST00000219548.9; ENST00000565677.5; ENST00000569248.5; ENST00000564370.5
External Link RMBase: m6A_site_299363
mod ID: M6ASITE025295 Click to Show/Hide the Full List
mod site chr16:682553-682554:+ [5]
Sequence CAGAAGCCCCCGGCCCCTATACATAGTTTATGTTCCTGGCC
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000564316.1; ENST00000565677.5; ENST00000219548.9; ENST00000565813.1; ENST00000569248.5
External Link RMBase: m6A_site_299366
mod ID: M6ASITE025300 Click to Show/Hide the Full List
mod site chr16:682607-682608:+ [4]
Sequence CCCCCAAGTTCTGCTGTTGGACTCTGGACTGTTTCCCCTCT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; HepG2; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000564316.1; ENST00000569248.5; ENST00000565813.1; ENST00000565677.5; ENST00000219548.9
External Link RMBase: m6A_site_299371
mod ID: M6ASITE025301 Click to Show/Hide the Full List
mod site chr16:682614-682615:+ [4]
Sequence GTTCTGCTGTTGGACTCTGGACTGTTTCCCCTCTCAGCATC
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; HepG2; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000219548.9; ENST00000569248.5; ENST00000564316.1; ENST00000565813.1; ENST00000565677.5
External Link RMBase: m6A_site_299372