Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00418)
Target Name C-X-C motif chemokine ligand 1 (CXCL1)
Synonyms
SCYB1; GROa; MGSA-a; NAP-3; MGSA; GRO1; FSP; GRO1 oncogene (melanoma growth stimulating activity, alpha); fibroblast secretory protein; chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
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Gene Name CXCL1
Sequence
MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN
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Family Intercrine alpha (chemokine CxC) family
Function
Has chemotactic activity for neutrophils. May play a role in inflammation and exerts its effects on endothelial cells in an autocrine fashion. In vitro, the processed forms GRO-alpha(4-73), GRO-alpha(5-73) and GRO-alpha(6-73) show a 30-fold higher chemotactic activity.
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Gene ID 2919
HGNC ID HGNC:4602
Ensembl Gene ID ENSG00000163739
KEGG ID hsa:2919
Chromosomal Location 4q13.3
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00418)
C-X-C motif chemokine ligand 1 (CXCL1)
N6-methyladenosine (m6A)
In total 9 m6A sequence/site(s) in this target gene
mod ID: M6ASITE066152 Click to Show/Hide the Full List
mod site chr4:73869452-73869453:+ [1]
Sequence GCTCCTCTCACAGCCGCCAGACCCGCCTGCTGAGCCCCATG
Motif Score 2.876744048
Cell/Tissue List A549; iSLK; MSC; TIME; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000509101.1; ENST00000395761.3
External Link RMBase: m6A_site_640341
mod ID: M6ASITE066153 Click to Show/Hide the Full List
mod site chr4:73869687-73869688:+ [1]
Sequence GGAGCGTCCGTGGCCACTGAACTGCGCTGCCAGTGCTTGCA
Motif Score 3.373380952
Cell/Tissue List A549; Huh7; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000509101.1; ENST00000395761.3
External Link RMBase: m6A_site_640342
mod ID: M6ASITE066154 Click to Show/Hide the Full List
mod site chr4:73869709-73869710:+ [1]
Sequence TGCGCTGCCAGTGCTTGCAGACCCTGCAGGGAATTCACCCC
Motif Score 2.876744048
Cell/Tissue List A549; Huh7; endometrial; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000395761.3; ENST00000509101.1
External Link RMBase: m6A_site_640343
mod ID: M6ASITE066155 Click to Show/Hide the Full List
mod site chr4:73869734-73869735:+ [1]
Sequence GCAGGGAATTCACCCCAAGAACATCCAAAGTGTGAACGTGA
Motif Score 2.951386905
Cell/Tissue List A549; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000509101.1; ENST00000395761.3
External Link RMBase: m6A_site_640344
mod ID: M6ASITE066156 Click to Show/Hide the Full List
mod site chr4:73869765-73869766:+ [1]
Sequence GTGAACGTGAAGTCCCCCGGACCCCACTGCGCCCAAACCGA
Motif Score 3.622404762
Cell/Tissue List A549; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000395761.3; ENST00000509101.1
External Link RMBase: m6A_site_640345
mod ID: M6ASITE066157 Click to Show/Hide the Full List
mod site chr4:73869781-73869782:+ [1]
Sequence CCGGACCCCACTGCGCCCAAACCGAAGTCATGTAAGTCCCG
Motif Score 2.185083333
Cell/Tissue List A549; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000395761.3; ENST00000509101.1
External Link RMBase: m6A_site_640346
mod ID: M6ASITE066158 Click to Show/Hide the Full List
mod site chr4:73869985-73869986:+ [2]
Sequence AATCATCGAAAAGATGCTGAACAGGTGAGTTATGGTTTCCA
Motif Score 2.951386905
Cell/Tissue List A549
Seq Type List m6A-seq
Transcript ID List ENST00000395761.3; ENST00000509101.1
External Link RMBase: m6A_site_640347
mod ID: M6ASITE066159 Click to Show/Hide the Full List
mod site chr4:73870597-73870598:+ [2]
Sequence GAGGCCCTGCCCTTATAGGAACAGAAGAGGAAAGAGAGACA
Motif Score 2.951386905
Cell/Tissue List A549; endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000395761.3
External Link RMBase: m6A_site_640348
mod ID: M6ASITE066160 Click to Show/Hide the Full List
mod site chr4:73870615-73870616:+ [2]
Sequence GAACAGAAGAGGAAAGAGAGACACAGCTGCAGAGGCCACCT
Motif Score 2.897386905
Cell/Tissue List A549; endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000395761.3
External Link RMBase: m6A_site_640349