Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00409)

Target Name	NFKB activating protein (NKAP)
Synonyms	FLJ22626 Click to Show/Hide
Gene Name	NKAP
Sequence	MAPVSGSRSPDREASGSGGRRRSSSKSPKPSKSARSPRGRRSRSHSCSRSGDRNGLTHQLGGLSQGSRNQSYRSRSRSRSRERPSAPRGIPFASASSSVYYGSYSRPYGSDKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDSDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKESQEEFLENPWKDRTKAEEPSDLIGPEAPKTLTSQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRKTKGKDDK Click to Show/Hide
Family	NKAP family
Function	Acts as a transcriptional repressor (PubMed:14550261, PubMed:19409814, PubMed:31587868). Plays a role as a transcriptional corepressor of the Notch-mediated signaling required for T-cell development (PubMed:19409814). Also involved in the TNF and IL-1 induced NF-kappa-B activation. Associates with chromatin at the Notch-regulated SKP2 promoter. Click to Show/Hide
Gene ID	79576
HGNC ID	HGNC:29873
Ensembl Gene ID	ENSG00000101882
KEGG ID	hsa:79576
Chromosomal Location	Xq24

RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00409)

NFKB activating protein (NKAP)

Adenosine-to-Inosine editing (A-to-I)

In total 18 m6A sequence/site(s) in this target gene
mod ID: A2ISITE003828		Click to Show/Hide the Full List
mod site	chrX:119921795-119921796:-		[1]
Sequence	TTTTTTGGTTACTGGTTCCTAGAGATGAAATGATTATCTTA
Transcript ID List	ENST00000455986.1; ENST00000371410.5
External Link	RMBase: RNA-editing_site_142909
mod ID: A2ISITE003829		Click to Show/Hide the Full List
mod site	chrX:119921825-119921826:-		[2]
Sequence	AAATAAAAATGTATTCTCTAAGGACATTTTTTTTTTGGTTA
Transcript ID List	ENST00000371410.5; ENST00000455986.1
External Link	RMBase: RNA-editing_site_142910
mod ID: A2ISITE003830		Click to Show/Hide the Full List
mod site	chrX:119921873-119921874:-		[2]
Sequence	ACTCCGGCCTGGGAGACAGAATGAGACTCCGTCTCTAAATA
Transcript ID List	rmsk_3109758; ENST00000455986.1; ENST00000371410.5
External Link	RMBase: RNA-editing_site_142911
mod ID: A2ISITE003831		Click to Show/Hide the Full List
mod site	chrX:119921874-119921875:-		[2]
Sequence	CACTCCGGCCTGGGAGACAGAATGAGACTCCGTCTCTAAAT
Transcript ID List	rmsk_3109758; ENST00000455986.1; ENST00000371410.5
External Link	RMBase: RNA-editing_site_142912
mod ID: A2ISITE003832		Click to Show/Hide the Full List
mod site	chrX:119922627-119922628:-		[3]
Sequence	CTCAAGCAATCCTCCACCTCAGCCTCCCGAGCAGCTGGGAC
Transcript ID List	ENST00000371410.5; ENST00000455986.1
External Link	RMBase: RNA-editing_site_142913
mod ID: A2ISITE003833		Click to Show/Hide the Full List
mod site	chrX:119927188-119927189:-		[4]
Sequence	TGGGAGGCGGAGGTTGCAATAAGCCGAGATTATGCCACTGC
Transcript ID List	ENST00000371410.5; ENST00000652253.1; ENST00000477789.5; rmsk_3109769
External Link	RMBase: RNA-editing_site_142914
mod ID: A2ISITE003834		Click to Show/Hide the Full List
mod site	chrX:119929114-119929115:-		[1]
Sequence	TCACTTGAGTCCAGGAGTTCAAGACTAGCCTGGGCAACATG
Transcript ID List	ENST00000477789.5; ENST00000652253.1; ENST00000371410.5; rmsk_3109776
External Link	RMBase: RNA-editing_site_142915
mod ID: A2ISITE003835		Click to Show/Hide the Full List
mod site	chrX:119933855-119933856:-		[1]
Sequence	CTCCGCCTCCCGGGTTCACAAAGATAGGCATTCTTTAAAAC
Transcript ID List	ENST00000652253.1; ENST00000477789.5; ENST00000371410.5
External Link	RMBase: RNA-editing_site_142916
mod ID: A2ISITE003836		Click to Show/Hide the Full List
mod site	chrX:119934149-119934150:-		[5]
Sequence	GTGAGCCACTGCACCCGGCCAGAAAATTTCAAATGCATATA
Transcript ID List	ENST00000652253.1; ENST00000371410.5; ENST00000477789.5
External Link	RMBase: RNA-editing_site_142917
mod ID: A2ISITE003837		Click to Show/Hide the Full List
mod site	chrX:119934157-119934158:-		[5]
Sequence	TTACAGGAGTGAGCCACTGCACCCGGCCAGAAAATTTCAAA
Transcript ID List	ENST00000477789.5; ENST00000371410.5; ENST00000652253.1
External Link	RMBase: RNA-editing_site_142918
mod ID: A2ISITE003838		Click to Show/Hide the Full List
mod site	chrX:119934175-119934176:-		[5]
Sequence	CCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACTGCACC
Transcript ID List	ENST00000477789.5; ENST00000371410.5; ENST00000652253.1
External Link	RMBase: RNA-editing_site_142919
mod ID: A2ISITE003839		Click to Show/Hide the Full List
mod site	chrX:119934188-119934189:-		[5]
Sequence	CCTCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGAGT
Transcript ID List	ENST00000477789.5; ENST00000371410.5; ENST00000652253.1
External Link	RMBase: RNA-editing_site_142920
mod ID: A2ISITE003840		Click to Show/Hide the Full List
mod site	chrX:119934202-119934203:-		[5]
Sequence	TGACCTCAAGTGATCCTCCCACCTTGGCCTCCCAAAGTGCT
Transcript ID List	ENST00000652253.1; ENST00000371410.5; ENST00000477789.5
External Link	RMBase: RNA-editing_site_142921
mod ID: A2ISITE003841		Click to Show/Hide the Full List
mod site	chrX:119934210-119934211:-		[5]
Sequence	CGAACTCCTGACCTCAAGTGATCCTCCCACCTTGGCCTCCC
Transcript ID List	ENST00000371410.5; ENST00000477789.5; ENST00000652253.1
External Link	RMBase: RNA-editing_site_142922
mod ID: A2ISITE003842		Click to Show/Hide the Full List
mod site	chrX:119934215-119934216:-		[5]
Sequence	GGTTTCGAACTCCTGACCTCAAGTGATCCTCCCACCTTGGC
Transcript ID List	ENST00000477789.5; ENST00000371410.5; ENST00000652253.1
External Link	RMBase: RNA-editing_site_142923
mod ID: A2ISITE003843		Click to Show/Hide the Full List
mod site	chrX:119934227-119934228:-		[5]
Sequence	GTTGGCCAGGCTGGTTTCGAACTCCTGACCTCAAGTGATCC
Transcript ID List	ENST00000652253.1; ENST00000477789.5; ENST00000371410.5
External Link	RMBase: RNA-editing_site_142924
mod ID: A2ISITE003844		Click to Show/Hide the Full List
mod site	chrX:119934331-119934332:-		[5]
Sequence	CAAGCGATTCTCATGTCCCAACCTCCCGAGTAGCTGGGATT
Transcript ID List	ENST00000477789.5; ENST00000371410.5; ENST00000652253.1
External Link	RMBase: RNA-editing_site_142925
mod ID: A2ISITE003845		Click to Show/Hide the Full List
mod site	chrX:119939454-119939455:-		[1]
Sequence	ATCTCTACTAAGAATACAAAAATTAGCCAGGCGTGATGGCG
Transcript ID List	rmsk_3109805; ENST00000652253.1; ENST00000371410.5
External Link	RMBase: RNA-editing_site_142926

2'-O-Methylation (2'-O-Me)

In total 1 m6A sequence/site(s) in this target gene
mod ID: 2OMSITE000548		Click to Show/Hide the Full List
mod site	chrX:119943437-119943438:-		[6]
Sequence	TCCGGGGACCGGAATGGACTCACCCATCAGCTGGGTGGCCT
Cell/Tissue List	HeLa
Seq Type List	Nm-seq
Transcript ID List	ENST00000371410.5; ENST00000652253.1
External Link	RMBase: Nm_site_6982

N6-methyladenosine (m6A)

In total 33 m6A sequence/site(s) in this target gene
mod ID: M6ASITE093121		Click to Show/Hide the Full List
mod site	chrX:119920793-119920794:-		[7]
Sequence	AATACTTTAGAAAATAGAAAACAACTTACTGGTTACTCTGC
Motif Score	2.20572619
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000371410.5
External Link	RMBase: m6A_site_871212
mod ID: M6ASITE093122		Click to Show/Hide the Full List
mod site	chrX:119925111-119925112:-		[8]
Sequence	TGAGAAAGCTTTACAGTGCTACTGTGCCTTCTATTTAATTC
Motif Score	2.500660714
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000371410.5; ENST00000652253.1; ENST00000477789.5
External Link	RMBase: m6A_site_871213
mod ID: M6ASITE093123		Click to Show/Hide the Full List
mod site	chrX:119925196-119925197:-		[9]
Sequence	ATTTTCTGATTGTCCAGAAGACATTTTTAACAACAAAAAAG
Motif Score	2.897386905
Cell/Tissue List	HeLa; HepG2; HEK293T; hESC-HEK293T; hNPCs; hESCs; fibroblasts; A549; LCLs; H1299; Huh7; Jurkat; CD4T; peripheral-blood; endometrial; NB4; MM6
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000477789.5; ENST00000371410.5; ENST00000652253.1
External Link	RMBase: m6A_site_871214
mod ID: M6ASITE093124		Click to Show/Hide the Full List
mod site	chrX:119925242-119925243:-		[9]
Sequence	GAGAAATGGTTTACAGAAAGACCAAAGGGAAGGATGACAAA
Motif Score	2.876744048
Cell/Tissue List	HeLa; HepG2; HEK293T; hNPCs; hESCs; fibroblasts; A549; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000652253.1; ENST00000371410.5; ENST00000477789.5
External Link	RMBase: m6A_site_871215
mod ID: M6ASITE093125		Click to Show/Hide the Full List
mod site	chrX:119925250-119925251:-		[10]
Sequence	CAGTTTTCGAGAAATGGTTTACAGAAAGACCAAAGGGAAGG
Motif Score	2.07285119
Cell/Tissue List	brain; kidney
Seq Type List	m6A-REF-seq
Transcript ID List	ENST00000652253.1; ENST00000477789.5; ENST00000371410.5
External Link	RMBase: m6A_site_871216
mod ID: M6ASITE093126		Click to Show/Hide the Full List
mod site	chrX:119925283-119925284:-		[9]
Sequence	AGAGAGACGAAAGAGAGAGAACAAGATTCTGGCCAGTTTTC
Motif Score	2.951386905
Cell/Tissue List	HeLa; HepG2; HEK293T; hESC-HEK293T; hNPCs; fibroblasts; A549; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000477789.5; ENST00000652253.1; ENST00000371410.5
External Link	RMBase: m6A_site_871217
mod ID: M6ASITE093127		Click to Show/Hide the Full List
mod site	chrX:119925346-119925347:-		[8]
Sequence	GCGAAAAGAGAACCAGATCTACAGTGCTGATGAGAAGAGAG
Motif Score	2.078666667
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000371410.5; ENST00000652253.1; ENST00000477789.5
External Link	RMBase: m6A_site_871218
mod ID: M6ASITE093128		Click to Show/Hide the Full List
mod site	chrX:119925355-119925356:-		[9]
Sequence	TGTGCGACTGCGAAAAGAGAACCAGATCTACAGTGCTGATG
Motif Score	2.930744048
Cell/Tissue List	HeLa; CD34; HEK293T; hNPCs; H1299; MM6; Huh7; Jurkat; CD4T; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000477789.5; ENST00000652253.1; ENST00000371410.5
External Link	RMBase: m6A_site_871219
mod ID: M6ASITE093129		Click to Show/Hide the Full List
mod site	chrX:119930070-119930071:-		[8]
Sequence	GAAGAGGTGAAATTGGCTTGACAAGTGAAGAAATTGCATCA
Motif Score	2.859755952
Cell/Tissue List	HEK293T; hESC-HEK293T
Seq Type List	DART-seq; MAZTER-seq
Transcript ID List	ENST00000477789.5; ENST00000371410.5; ENST00000652253.1
External Link	RMBase: m6A_site_871220
mod ID: M6ASITE093130		Click to Show/Hide the Full List
mod site	chrX:119930092-119930093:-		[8]
Sequence	AAAGCTGGAAAACGTATCCCACGAAGAGGTGAAATTGGCTT
Motif Score	2.027047619
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000477789.5; ENST00000652253.1; ENST00000371410.5
External Link	RMBase: m6A_site_871221
mod ID: M6ASITE093131		Click to Show/Hide the Full List
mod site	chrX:119931943-119931944:-		[9]
Sequence	CTTACCTCTCAAGATGATAAACCTTTGAAGTAAGCAGCAGT
Motif Score	2.185083333
Cell/Tissue List	HeLa; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000477789.5; ENST00000652253.1; ENST00000371410.5; ENST00000482407.1
External Link	RMBase: m6A_site_871222
mod ID: M6ASITE093132		Click to Show/Hide the Full List
mod site	chrX:119931964-119931965:-		[8]
Sequence	GGCCCAGAGGCTCCAAAAACACTTACCTCTCAAGATGATAA
Motif Score	2.506922619
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000477789.5; ENST00000652253.1; ENST00000482407.1; ENST00000371410.5
External Link	RMBase: m6A_site_871223
mod ID: M6ASITE093133		Click to Show/Hide the Full List
mod site	chrX:119931966-119931967:-		[9]
Sequence	TTGGCCCAGAGGCTCCAAAAACACTTACCTCTCAAGATGAT
Motif Score	2.20572619
Cell/Tissue List	HeLa; hESC-HEK293T; Huh7
Seq Type List	m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List	ENST00000482407.1; ENST00000477789.5; ENST00000652253.1; ENST00000371410.5
External Link	RMBase: m6A_site_871224
mod ID: M6ASITE093134		Click to Show/Hide the Full List
mod site	chrX:119932000-119932001:-		[9]
Sequence	TTTCATGCAGAGGCTGAAGAACCATCAGATTTAATTGGCCC
Motif Score	2.930744048
Cell/Tissue List	HeLa; Huh7; Jurkat
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000482407.1; ENST00000371410.5; ENST00000477789.5; ENST00000652253.1
External Link	RMBase: m6A_site_871225
mod ID: M6ASITE093135		Click to Show/Hide the Full List
mod site	chrX:119932109-119932110:-		[9]
Sequence	AAAATCCCTGGAAGGATCGAACAAGTAGGTTCTTCTGATAG
Motif Score	2.951386905
Cell/Tissue List	HeLa; HepG2; HEK293T; hESC-HEK293T; MM6; Huh7; Jurkat
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000477789.5; ENST00000652253.1; ENST00000482407.1; ENST00000371410.5
External Link	RMBase: m6A_site_871226
mod ID: M6ASITE093136		Click to Show/Hide the Full List
mod site	chrX:119932707-119932708:-		[11]
Sequence	GCTGGGATTACAGGGGTGAAACACTACACCCAGCCTCCTTT
Motif Score	2.20572619
Cell/Tissue List	HepG2; BGC823; HEK293T; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000482407.1; ENST00000477789.5; ENST00000652253.1; ENST00000371410.5
External Link	RMBase: m6A_site_871227
mod ID: M6ASITE093137		Click to Show/Hide the Full List
mod site	chrX:119934501-119934502:-		[9]
Sequence	AAAAAGGAAAAGAAGAAGAAACACAGATCGTCAGTTTTTTA
Motif Score	2.20572619
Cell/Tissue List	HeLa; CD34; HEK293T; hESC-HEK293T; BGC823; hNPCs; Huh7; Jurkat
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000371410.5; ENST00000477789.5; ENST00000652253.1
External Link	RMBase: m6A_site_871228
mod ID: M6ASITE093138		Click to Show/Hide the Full List
mod site	chrX:119934547-119934548:-		[12]
Sequence	TTAATTTGCAGATGAAGATAACAAAAGGAGAGCAAAGAAAG
Motif Score	2.168095238
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000652253.1; ENST00000477789.5; ENST00000371410.5
External Link	RMBase: m6A_site_871229
mod ID: M6ASITE093139		Click to Show/Hide the Full List
mod site	chrX:119936308-119936309:-		[9]
Sequence	ACAGTGACTCTGATTCTGAAACAGACTCCAGTGGTAAGAAC
Motif Score	2.20572619
Cell/Tissue List	HeLa; CD34; HEK293T; brain; BGC823; hNPCs; fibroblasts; A549; LCLs; Huh7; Jurkat; CD4T
Seq Type List	m6A-seq; MeRIP-seq; m6A-REF-seq
Transcript ID List	ENST00000371410.5; ENST00000477789.5; ENST00000652253.1
External Link	RMBase: m6A_site_871230
mod ID: M6ASITE093140		Click to Show/Hide the Full List
mod site	chrX:119936328-119936329:-		[10]
Sequence	GAAGTATTCTGAAGATAGCGACAGTGACTCTGATTCTGAAA
Motif Score	2.865571429
Cell/Tissue List	kidney
Seq Type List	m6A-REF-seq
Transcript ID List	ENST00000371410.5; ENST00000477789.5; ENST00000652253.1
External Link	RMBase: m6A_site_871231
mod ID: M6ASITE093141		Click to Show/Hide the Full List
mod site	chrX:119936354-119936355:-		[9]
Sequence	AAAAAATCATCGAAAAGAAAACATAAGAAGTATTCTGAAGA
Motif Score	2.20572619
Cell/Tissue List	HeLa; CD34; HEK293T; hESC-HEK293T; BGC823; hNPCs; fibroblasts; A549; LCLs; Huh7; Jurkat; NB4
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000371410.5; ENST00000652253.1; ENST00000477789.5
External Link	RMBase: m6A_site_871232
mod ID: M6ASITE093142		Click to Show/Hide the Full List
mod site	chrX:119936668-119936669:-		[12]
Sequence	AATTCAGTTCTGATGAACATACACCAGTGGAGGATGAAGAG
Motif Score	2.110482143
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000477789.5; ENST00000652253.1; ENST00000371410.5
External Link	RMBase: m6A_site_871233
mod ID: M6ASITE093143		Click to Show/Hide the Full List
mod site	chrX:119936672-119936673:-		[9]
Sequence	TTTAAATTCAGTTCTGATGAACATACACCAGTGGAGGATGA
Motif Score	2.951386905
Cell/Tissue List	HeLa; CD34; HEK293T; hESC-HEK293T; Huh7; NB4
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000371410.5; ENST00000477789.5; ENST00000652253.1
External Link	RMBase: m6A_site_871234
mod ID: M6ASITE093144		Click to Show/Hide the Full List
mod site	chrX:119936785-119936786:-		[9]
Sequence	TTGCTTTTAATGGTTCTTGGACAATCGATGCTGTTACTGAA
Motif Score	3.643047619
Cell/Tissue List	HeLa; HEK293T
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000477789.5; ENST00000652253.1; ENST00000371410.5
External Link	RMBase: m6A_site_871235
mod ID: M6ASITE093145		Click to Show/Hide the Full List
mod site	chrX:119938734-119938735:-		[9]
Sequence	CTTTCTCCAAAGAATCCTGAACCAGAGTAAGTGGTTAAAAA
Motif Score	2.930744048
Cell/Tissue List	HeLa; CD34; hNPCs
Seq Type List	m6A-seq
Transcript ID List	ENST00000371410.5; ENST00000652253.1
External Link	RMBase: m6A_site_871236
mod ID: M6ASITE093146		Click to Show/Hide the Full List
mod site	chrX:119938755-119938756:-		[9]
Sequence	GGAGCTCCTGAAGTATGGGGACTTTCTCCAAAGAATCCTGA
Motif Score	4.065041667
Cell/Tissue List	HeLa; CD34; hNPCs; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000371410.5; ENST00000652253.1
External Link	RMBase: m6A_site_871237
mod ID: M6ASITE093147		Click to Show/Hide the Full List
mod site	chrX:119943249-119943250:-		[12]
Sequence	GCCTTGGCCTAGCCTCCTCGACAAGGAGAGGGAGGAGAGCC
Motif Score	2.865571429
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000371410.5; ENST00000652253.1
External Link	RMBase: m6A_site_871238
mod ID: M6ASITE093148		Click to Show/Hide the Full List
mod site	chrX:119943399-119943400:-		[9]
Sequence	CCTCAGCCAAGGCTCCCGAAACCAGTCCTACCGCTCACGCT
Motif Score	2.185083333
Cell/Tissue List	HeLa; CD34; HepG2; A549; H1A; MM6; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000371410.5; ENST00000652253.1
External Link	RMBase: m6A_site_871241
mod ID: M6ASITE093149		Click to Show/Hide the Full List
mod site	chrX:119943440-119943441:-		[9]
Sequence	CGGTCCGGGGACCGGAATGGACTCACCCATCAGCTGGGTGG
Motif Score	4.065041667
Cell/Tissue List	HeLa; CD34; HepG2; A549; H1A; MM6; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000652253.1; ENST00000371410.5
External Link	RMBase: m6A_site_871242
mod ID: M6ASITE093150		Click to Show/Hide the Full List
mod site	chrX:119943450-119943451:-		[9]
Sequence	CTCTTGCTCTCGGTCCGGGGACCGGAATGGACTCACCCATC
Motif Score	3.622404762
Cell/Tissue List	HeLa; CD34; HepG2; A549; H1A; MM6; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000652253.1; ENST00000371410.5
External Link	RMBase: m6A_site_871243
mod ID: M6ASITE093151		Click to Show/Hide the Full List
mod site	chrX:119943667-119943668:-		[9]
Sequence	CCCGGGAACCAAGGCAACAGACATCTTCCTAGGCTCGCGAG
Motif Score	2.897386905
Cell/Tissue List	HeLa; HepG2; A549; HEK293T; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000371410.5
External Link	RMBase: m6A_site_871249
mod ID: M6ASITE093152		Click to Show/Hide the Full List
mod site	chrX:119943680-119943681:-		[9]
Sequence	CGCAGCGGCAGGTCCCGGGAACCAAGGCAACAGACATCTTC
Motif Score	2.930744048
Cell/Tissue List	HeLa; HepG2; A549; HEK293T; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000371410.5
External Link	RMBase: m6A_site_871250
mod ID: M6ASITE093153		Click to Show/Hide the Full List
mod site	chrX:119943735-119943736:-		[9]
Sequence	GTTTTGCAGAAGTACCCAGAACTGTGTCCAAGGTTTCCTCA
Motif Score	3.373380952
Cell/Tissue List	HeLa; A549; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000371410.5
External Link	RMBase: m6A_site_871255

Ref 1	RADAR: a rigorously annotated database of A-to-I RNA editing. Nucleic Acids Res. 2014 Jan;42(Database issue):D109-13. doi: 10.1093/nar/gkt996. Epub 2013 Oct 25.
Ref 2	Systematic identification of abundant A-to-I editing sites in the human transcriptome. Nat Biotechnol. 2004 Aug;22(8):1001-5. doi: 10.1038/nbt996. Epub 2004 Jul 18.
Ref 3	Accurate identification of A-to-I RNA editing in human by transcriptome sequencing. Genome Res. 2012 Jan;22(1):142-50. doi: 10.1101/gr.124107.111. Epub 2011 Sep 29.
Ref 4	Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome. Nat Biotechnol. 2012 Feb 12;30(3):253-60. doi: 10.1038/nbt.2122.
Ref 5	Identification of widespread ultra-edited human RNAs. PLoS Genet. 2011 Oct;7(10):e1002317. doi: 10.1371/journal.pgen.1002317. Epub 2011 Oct 20.
Ref 6	Nm-seq maps 2'-O-methylation sites in human mRNA with base precision. Nat Methods. 2017 Jul;14(7):695-698. doi: 10.1038/nmeth.4294. Epub 2017 May 15.
Ref 7	N6-Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection. Cell Host Microbe. 2016 Nov 9;20(5):654-665. doi: 10.1016/j.chom.2016.09.015. Epub 2016 Oct 20.
Ref 8	DART-seq: an antibody-free method for global m(6)A detection. Nat Methods. 2019 Dec;16(12):1275-1280. doi: 10.1038/s41592-019-0570-0. Epub 2019 Sep 23.
Ref 9	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.
Ref 10	Single-base mapping of m(6)A by an antibody-independent method. Sci Adv. 2019 Jul 3;5(7):eaax0250. doi: 10.1126/sciadv.aax0250. eCollection 2019 Jul.
Ref 11	Histone H3 trimethylation at lysine 36 guides m(6)A RNA modification co-transcriptionally. Nature. 2019 Mar;567(7748):414-419. doi: 10.1038/s41586-019-1016-7. Epub 2019 Mar 13.
Ref 12	Deciphering the "m(6)A Code" via Antibody-Independent Quantitative Profiling. Cell. 2019 Jul 25;178(3):731-747.e16. doi: 10.1016/j.cell.2019.06.013. Epub 2019 Jun 27.

Epigenetic Target Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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