Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00320)
Target Name Forkhead box protein C2 (FOXC2)
Synonyms
Forkhead-related protein FKHL14; Mesenchyme fork head protein 1; MFH-1 protein; Transcription factor FKH-14; FKHL14; MFH1
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Gene Name FOXC2
Sequence
MQARYSVSDPNALGVVPYLSEQNYYRAAGSYGGMASPMGVYSGHPEQYSAGMGRSYAPYHHHQPAAPKDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVSKEKEERAHLKEPPPAASKGAPATPHLADAPKEAEKKVVIKSEAASPALPVITKVETLSPESALQGSPRSAASTPAGSPDGSLPEHHAAAPNGLPGFSVENIMTLRTSPPGGELSPGAGRAGLVVPPLALPYAAAPPAAYGQPCAQGLEAGAAGGYQCSMRAMSLYTGAERPAHMCVPPALDEALSDHPSGPTSPLSALNLAAGQEGALAATGHHHQHHGHHHPQAPPPPPAPQPQPTPQPGAAAAQAASWYLNHSGDLNHLPGHTFAAQQQTFPNVREMFNSHRLGIENSTLGESQVSGNASCQLPYRSTPPLYRHAAPYSYDCTKY
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Function
Transcriptional activator. Might be involved in the formation of special mesenchymal tissues.
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Gene ID 2303
HGNC ID HGNC:3801
Ensembl Gene ID ENSG00000176692
KEGG ID hsa:2303
Chromosomal Location 16q24.1
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00320)
Forkhead box protein C2 (FOXC2)
5-methylcytidine (m5C)
In total 2 m6A sequence/site(s) in this target gene
mod ID: M5CSITE000802 Click to Show/Hide the Full List
mod site chr16:86566972-86566973:+ [1]
Sequence GCGCCCCTCCTCGCGCGGGCCGAGGGTCCACCTGGGTCCCC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m5C_site_16972
mod ID: M5CSITE000803 Click to Show/Hide the Full List
mod site chr16:86568186-86568187:+ [2]
Sequence CTGCGAACGTCGCCGCCGGGCGGAGAGCTGAGCCCGGGGGC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m5C_site_16973
N6-methyladenosine (m6A)
In total 21 m6A sequence/site(s) in this target gene
mod ID: M6ASITE028895 Click to Show/Hide the Full List
mod site chr16:86566895-86566896:+ [3]
Sequence TCAGCGGGGCAGCCGCTCGGACCCCGGCGCGCTGACCCTCG
Motif Score 3.622404762
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335267
mod ID: M6ASITE028896 Click to Show/Hide the Full List
mod site chr16:86567540-86567541:+ [3]
Sequence CCAGCCCGCGGCGCCTAAGGACCTGGTGAAGCCGCCCTACA
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; fibroblasts; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335268
mod ID: M6ASITE028898 Click to Show/Hide the Full List
mod site chr16:86567645-86567646:+ [3]
Sequence CATCTACCAGTTCATCATGGACCGCTTCCCCTTCTACCGGG
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; fibroblasts; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649859.1; ENST00000320354.6
External Link RMBase: m6A_site_335270
mod ID: M6ASITE028899 Click to Show/Hide the Full List
mod site chr16:86567669-86567670:+ [3]
Sequence CTTCCCCTTCTACCGGGAGAACAAGCAGGGCTGGCAGAACA
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; A549; fibroblasts; HEK293A-TOA; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649859.1; ENST00000320354.6
External Link RMBase: m6A_site_335271
mod ID: M6ASITE028900 Click to Show/Hide the Full List
mod site chr16:86567687-86567688:+ [3]
Sequence GAACAAGCAGGGCTGGCAGAACAGCATCCGCCACAACCTCT
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; A549; fibroblasts; HEK293A-TOA; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335272
mod ID: M6ASITE028901 Click to Show/Hide the Full List
mod site chr16:86567773-86567774:+ [3]
Sequence CCGGCAAGGGCAGTTACTGGACCCTGGACCCGGACTCCTAC
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; HepG2; hNPCs; fibroblasts; GSC-11; HEK293A-TOA; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649859.1; ENST00000320354.6
External Link RMBase: m6A_site_335273
mod ID: M6ASITE028902 Click to Show/Hide the Full List
mod site chr16:86567780-86567781:+ [3]
Sequence GGGCAGTTACTGGACCCTGGACCCGGACTCCTACAACATGT
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; HepG2; hNPCs; fibroblasts; GSC-11; HEK293A-TOA; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649859.1; ENST00000320354.6
External Link RMBase: m6A_site_335274
mod ID: M6ASITE028903 Click to Show/Hide the Full List
mod site chr16:86567786-86567787:+ [3]
Sequence TTACTGGACCCTGGACCCGGACTCCTACAACATGTTCGAGA
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; HepG2; hNPCs; fibroblasts; GSC-11; HEK293A-TOA; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335275
mod ID: M6ASITE028904 Click to Show/Hide the Full List
mod site chr16:86568155-86568156:+ [3]
Sequence GCCTGGCTTCAGCGTGGAGAACATCATGACCCTGCGAACGT
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335276
mod ID: M6ASITE028905 Click to Show/Hide the Full List
mod site chr16:86568413-86568414:+ [3]
Sequence CCTGGACGAGGCCCTCTCGGACCACCCGAGCGGCCCCACGT
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293A-TOA
Seq Type List m6A-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335277
mod ID: M6ASITE028906 Click to Show/Hide the Full List
mod site chr16:86568626-86568627:+ [3]
Sequence GTATCTCAACCACAGCGGGGACCTGAACCACCTCCCCGGCC
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; fibroblasts; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335278
mod ID: M6ASITE028907 Click to Show/Hide the Full List
mod site chr16:86568632-86568633:+ [3]
Sequence CAACCACAGCGGGGACCTGAACCACCTCCCCGGCCACACGT
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T; fibroblasts; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335279
mod ID: M6ASITE028909 Click to Show/Hide the Full List
mod site chr16:86568670-86568671:+ [3]
Sequence CGTTCGCGGCCCAGCAGCAAACTTTCCCCAACGTGCGGGAG
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; fibroblasts; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649859.1; ENST00000320354.6
External Link RMBase: m6A_site_335280
mod ID: M6ASITE028910 Click to Show/Hide the Full List
mod site chr16:86568722-86568723:+ [3]
Sequence CCACCGGCTGGGGATTGAGAACTCGACCCTCGGGGAGTCCC
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; fibroblasts; MM6; GSC-11; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649859.1; ENST00000320354.6
External Link RMBase: m6A_site_335281
mod ID: M6ASITE028911 Click to Show/Hide the Full List
mod site chr16:86568852-86568853:+ [3]
Sequence AAATACTGACGTGTCCCGGGACCTCCCCTCCCCGGCCCGCT
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; HepG2; fibroblasts; MM6; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335282
mod ID: M6ASITE028912 Click to Show/Hide the Full List
mod site chr16:86568905-86568906:+ [3]
Sequence CCCAGCCCCGACCCAACCAGACAATTAAGGGGCTGCAGAGA
Motif Score 2.897386905
Cell/Tissue List HeLa; HEK293T; A549; hESC-HEK293T; HepG2; hNPCs; fibroblasts; MM6; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000649859.1; ENST00000320354.6
External Link RMBase: m6A_site_335283
mod ID: M6ASITE028913 Click to Show/Hide the Full List
mod site chr16:86568938-86568939:+ [3]
Sequence TGCAGAGACGCAAAAAAGAAACAAAACATGTCCACCAACCT
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; A549; HepG2; hNPCs; fibroblasts; MM6; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335284
mod ID: M6ASITE028914 Click to Show/Hide the Full List
mod site chr16:86568943-86568944:+ [3]
Sequence AGACGCAAAAAAGAAACAAAACATGTCCACCAACCTTTTCT
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; A549; HepG2; hNPCs; fibroblasts; MM6; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335285
mod ID: M6ASITE028915 Click to Show/Hide the Full List
mod site chr16:86568967-86568968:+ [3]
Sequence GTCCACCAACCTTTTCTCAGACCCGGGAGCAGAGAGCGGGC
Motif Score 2.876744048
Cell/Tissue List HeLa; HEK293T; A549; HepG2; hNPCs; fibroblasts; MM6; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649859.1; ENST00000320354.6
External Link RMBase: m6A_site_335286
mod ID: M6ASITE028916 Click to Show/Hide the Full List
mod site chr16:86569061-86569062:+ [3]
Sequence CGTTTCTGGGATCCCAGGAAACCCCTCCAAAGGGACGCAGC
Motif Score 2.185083333
Cell/Tissue List HeLa; HEK293T; A549; fibroblasts; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649859.1; ENST00000320354.6
External Link RMBase: m6A_site_335287
mod ID: M6ASITE028917 Click to Show/Hide the Full List
mod site chr16:86569173-86569174:+ [3]
Sequence TTTCAAAAGTTAAGTTATGGACCAAATCCCATAGCGAGCCC
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; fibroblasts; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000320354.6; ENST00000649859.1
External Link RMBase: m6A_site_335288