General Information of the Epigenetic Target (ID: EPITAR00303)
Target Name E3 ubiquitin-protein ligase SIAH1 (SIAH1)
Synonyms
RING-type E3 ubiquitin transferase SIAH1; Seven in absentia homolog 1; Siah-1; Siah-1a; HUMSIAH
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Gene Name SIAH1
Sequence
MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC
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Family SINA (Seven in absentia) family
Function
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates . Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (ELL2, MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), the cell-surface receptor-type tyrosine kinase FLT3, the cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription regulation, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Induces apoptosis in cooperation with PEG3 (By similarity). Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus (By similarity). GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins (By similarity). Mediates ubiquitination and degradation of EGLN2 and EGLN3 in response to the unfolded protein response (UPR), leading to their degradation and subsequent stabilization of ATF4 (By similarity).
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Gene ID 6477
HGNC ID HGNC:10857
Ensembl Gene ID ENSG00000196470
KEGG ID hsa:6477
Chromosomal Location 16q12.1
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00303)
E3 ubiquitin-protein ligase SIAH1 (SIAH1)
Adenosine-to-Inosine editing (A-to-I)
In total 4 m6A sequence/site(s) in this target gene
mod ID: A2ISITE007324 Click to Show/Hide the Full List
mod site chr16:48359148-48359149:- [1]
Sequence GAAACCCTGTCTCTACTAAAAGTACAAAAAAGCCAGGCATG
Transcript ID List rmsk_4524493; ENST00000568007.5; ENST00000565620.5
External Link RMBase: RNA-editing_site_51122
mod ID: A2ISITE007325 Click to Show/Hide the Full List
mod site chr16:48364720-48364721:- [2]
Sequence AGTAAACTGGACCATGCAGTAGGCATACAGCATACAGCCAG
Transcript ID List ENST00000356721.3; ENST00000568007.5; ENST00000394725.3; ENST00000563745.1
External Link RMBase: RNA-editing_site_51123
mod ID: A2ISITE007326 Click to Show/Hide the Full List
mod site chr16:48367126-48367127:- [2]
Sequence CAGGCTGATGGCTTTAGCCCAGGAGTTCGAGACCAGCCTGG
Transcript ID List rmsk_4524501; ENST00000563745.1; ENST00000394725.3; ENST00000568007.5
External Link RMBase: RNA-editing_site_51124
mod ID: A2ISITE007327 Click to Show/Hide the Full List
mod site chr16:48369534-48369535:- [2]
Sequence TATTGCCTAGGCTTGTCTCAAACTCTTGGGCTCAAGTGATC
Transcript ID List ENST00000568007.5; ENST00000394725.3; ENST00000563745.1
External Link RMBase: RNA-editing_site_51125
5-methylcytidine (m5C)
In total 4 m6A sequence/site(s) in this target gene
mod ID: M5CSITE000722 Click to Show/Hide the Full List
mod site chr16:48385451-48385452:-
Sequence CGCCTCCTCATGGCCGCCGCCGCAGTGTGTGGTATTTAGCG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000568007.5; ENST00000563745.1
External Link RMBase: m5C_site_16055
mod ID: M5CSITE000723 Click to Show/Hide the Full List
mod site chr16:48385452-48385453:-
Sequence GCGCCTCCTCATGGCCGCCGCCGCAGTGTGTGGTATTTAGC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000568007.5; ENST00000563745.1
External Link RMBase: m5C_site_16056
mod ID: M5CSITE000724 Click to Show/Hide the Full List
mod site chr16:48385454-48385455:-
Sequence CCGCGCCTCCTCATGGCCGCCGCCGCAGTGTGTGGTATTTA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000568007.5; ENST00000563745.1
External Link RMBase: m5C_site_16057
mod ID: M5CSITE000725 Click to Show/Hide the Full List
mod site chr16:48385458-48385459:-
Sequence GGGGCCGCGCCTCCTCATGGCCGCCGCCGCAGTGTGTGGTA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000563745.1; ENST00000568007.5
External Link RMBase: m5C_site_16058
N6-methyladenosine (m6A)
In total 43 m6A sequence/site(s) in this target gene
mod ID: M6ASITE026933 Click to Show/Hide the Full List
mod site chr16:48360704-48360705:- [3]
Sequence TCCTTTTTCAGATATCTTGGACAAATCACATATTTTAAAAT
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000568007.5; ENST00000356721.3; ENST00000565620.5; ENST00000380006.2; ENST00000394725.3
External Link RMBase: m6A_site_320215
mod ID: M6ASITE026934 Click to Show/Hide the Full List
mod site chr16:48360745-48360746:- [4]
Sequence ATAAATTGATTTTTATAAATACTGCAAATCAGGCTTTTGTT
Motif Score 2.53247619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000380006.2; ENST00000356721.3; ENST00000568007.5; ENST00000394725.3; ENST00000565620.5
External Link RMBase: m6A_site_320216
mod ID: M6ASITE026935 Click to Show/Hide the Full List
mod site chr16:48360799-48360800:- [3]
Sequence CTGTCTTCTACAGATGAGTCACACCTTTGAGCTTAATCTTT
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000565620.5; ENST00000356721.3; ENST00000394725.3; ENST00000380006.2; ENST00000568007.5
External Link RMBase: m6A_site_320217
mod ID: M6ASITE026936 Click to Show/Hide the Full List
mod site chr16:48360872-48360873:- [4]
Sequence AGTTCCAGAAAGTAAAGGTGACATCGGAAAAATAATCAAAA
Motif Score 2.859755952
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000380006.2; ENST00000356721.3; ENST00000394725.3; ENST00000568007.5; ENST00000565620.5
External Link RMBase: m6A_site_320218
mod ID: M6ASITE026937 Click to Show/Hide the Full List
mod site chr16:48360970-48360971:- [4]
Sequence TTTATGGTAAAAAATTTATAACGTGTTCAATATTTTCTTTT
Motif Score 2.142029762
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000394725.3; ENST00000380006.2; ENST00000568007.5; ENST00000356721.3; ENST00000565620.5
External Link RMBase: m6A_site_320219
mod ID: M6ASITE026938 Click to Show/Hide the Full List
mod site chr16:48361028-48361029:- [4]
Sequence CAGGTTTTTCCTTTTTTTGTACCATTTTAAAGTTAGTATCT
Motif Score 2.8355
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000394725.3; ENST00000565620.5; ENST00000380006.2; ENST00000568007.5; ENST00000356721.3
External Link RMBase: m6A_site_320220
mod ID: M6ASITE026939 Click to Show/Hide the Full List
mod site chr16:48361062-48361063:- [4]
Sequence TTTTTCATTAAATAAATTTGACTTTTCTGTAATTCAGGTTT
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000380006.2; ENST00000568007.5; ENST00000356721.3; ENST00000394725.3; ENST00000565620.5
External Link RMBase: m6A_site_320221
mod ID: M6ASITE026940 Click to Show/Hide the Full List
mod site chr16:48361139-48361140:- [4]
Sequence TTTTCCCTTTGTGAGTCAATACATAGTGCTGCTGTGTGCTT
Motif Score 2.110482143
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000380006.2; ENST00000356721.3; ENST00000565620.5; ENST00000568007.5; ENST00000394725.3
External Link RMBase: m6A_site_320222
mod ID: M6ASITE026941 Click to Show/Hide the Full List
mod site chr16:48361191-48361192:- [4]
Sequence GGGTTTTTTTCCTTTAACTGACAAGCCATCTTGAGTGGTCA
Motif Score 2.859755952
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000565620.5; ENST00000356721.3; ENST00000380006.2; ENST00000394725.3; ENST00000568007.5
External Link RMBase: m6A_site_320223
mod ID: M6ASITE026942 Click to Show/Hide the Full List
mod site chr16:48361355-48361356:- [3]
Sequence CTGAAAAAATATATGTATATACACCCAAGATGGGCATCTTT
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000565620.5; ENST00000380006.2; ENST00000356721.3; ENST00000568007.5; ENST00000394725.3
External Link RMBase: m6A_site_320224
mod ID: M6ASITE026943 Click to Show/Hide the Full List
mod site chr16:48361376-48361377:- [4]
Sequence AAATAAGTCAACAGTAAACCACTGAAAAAATATATGTATAT
Motif Score 2.475107143
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000565620.5; ENST00000568007.5; ENST00000356721.3; ENST00000394725.3; ENST00000380006.2
External Link RMBase: m6A_site_320225
mod ID: M6ASITE026944 Click to Show/Hide the Full List
mod site chr16:48361379-48361380:- [5]
Sequence TAAAAATAAGTCAACAGTAAACCACTGAAAAAATATATGTA
Motif Score 2.185083333
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hNPCs; fibroblasts; GM12878; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000568007.5; ENST00000565620.5; ENST00000394725.3; ENST00000356721.3; ENST00000380006.2
External Link RMBase: m6A_site_320226
mod ID: M6ASITE026945 Click to Show/Hide the Full List
mod site chr16:48361428-48361429:- [5]
Sequence AAGGCTGTTAAATACAGGAAACAGTTGCATGTAGTAACACT
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hNPCs; hESCs; fibroblasts; GM12878; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000565620.5; ENST00000568007.5; ENST00000356721.3; ENST00000394725.3; ENST00000380006.2
External Link RMBase: m6A_site_320227
mod ID: M6ASITE026946 Click to Show/Hide the Full List
mod site chr16:48361435-48361436:- [6]
Sequence AAAAAGAAAGGCTGTTAAATACAGGAAACAGTTGCATGTAG
Motif Score 2.110482143
Cell/Tissue List HEK293
Seq Type List m6A-REF-seq
Transcript ID List ENST00000568007.5; ENST00000394725.3; ENST00000356721.3; ENST00000380006.2; ENST00000565620.5
External Link RMBase: m6A_site_320228
mod ID: M6ASITE026947 Click to Show/Hide the Full List
mod site chr16:48361471-48361472:- [5]
Sequence TTTCGGTAGGTGGAAGCTAGACACATGAAGGTAAATAAAAA
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; NB4
Seq Type List m6A-seq; MeRIP-seq; DART-seq; MAZTER-seq
Transcript ID List ENST00000356721.3; ENST00000380006.2; ENST00000568007.5; ENST00000394725.3; ENST00000565620.5
External Link RMBase: m6A_site_320229
mod ID: M6ASITE026948 Click to Show/Hide the Full List
mod site chr16:48361495-48361496:- [5]
Sequence CATCTGTCTGCCAACCTAAAACTCTTTCGGTAGGTGGAAGC
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000394725.3; ENST00000356721.3; ENST00000568007.5; ENST00000380006.2; ENST00000565620.5
External Link RMBase: m6A_site_320230
mod ID: M6ASITE026949 Click to Show/Hide the Full List
mod site chr16:48361543-48361544:- [5]
Sequence TTTTCTGGCCAGTGTTTAAAACTTCAGTTTCACAGAAAATA
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000565620.5; ENST00000380006.2; ENST00000394725.3; ENST00000356721.3; ENST00000568007.5
External Link RMBase: m6A_site_320233
mod ID: M6ASITE026950 Click to Show/Hide the Full List
mod site chr16:48361566-48361567:- [5]
Sequence TGTGTTGAAATGGCAATCAAACATTTTCTGGCCAGTGTTTA
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000394725.3; ENST00000380006.2; ENST00000568007.5; ENST00000356721.3; ENST00000565620.5
External Link RMBase: m6A_site_320235
mod ID: M6ASITE026951 Click to Show/Hide the Full List
mod site chr16:48361649-48361650:- [6]
Sequence TAGCGACTGTCTAGTCTTTGACACCAGCATTGCACAGCTTT
Motif Score 2.859755952
Cell/Tissue List brain
Seq Type List m6A-REF-seq
Transcript ID List ENST00000565620.5; ENST00000356721.3; ENST00000568007.5; ENST00000394725.3; ENST00000380006.2
External Link RMBase: m6A_site_320236
mod ID: M6ASITE026952 Click to Show/Hide the Full List
mod site chr16:48361683-48361684:- [3]
Sequence CTATTCATGAAGGAATTGCAACAGCCATTATGAATAGCGAC
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T; CD8T
Seq Type List MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000356721.3; ENST00000380006.2; ENST00000394725.3; ENST00000568007.5; ENST00000565620.5
External Link RMBase: m6A_site_320239
mod ID: M6ASITE026953 Click to Show/Hide the Full List
mod site chr16:48361788-48361789:- [5]
Sequence CAATCGTACAGCTGATAGGAACACGCAAGCAAGCTGAAAAT
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; brain; liver; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; MM6; Huh7; Jurkat; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-REF-seq; DART-seq; MAZTER-seq
Transcript ID List ENST00000568007.5; ENST00000356721.3; ENST00000380006.2; ENST00000565620.5; ENST00000394725.3
External Link RMBase: m6A_site_320240
mod ID: M6ASITE026954 Click to Show/Hide the Full List
mod site chr16:48361801-48361802:- [6]
Sequence CAGCAGTTCTTCGCAATCGTACAGCTGATAGGAACACGCAA
Motif Score 2.856142857
Cell/Tissue List HEK293
Seq Type List m6A-REF-seq
Transcript ID List ENST00000380006.2; ENST00000394725.3; ENST00000356721.3; ENST00000568007.5
External Link RMBase: m6A_site_320241
mod ID: M6ASITE026955 Click to Show/Hide the Full List
mod site chr16:48361843-48361844:- [5]
Sequence TTCATGTTAGTCTTAGAGAAACAGGAAAAATACGATGGTCA
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; brain; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; m6A-REF-seq
Transcript ID List ENST00000356721.3; ENST00000394725.3; ENST00000568007.5; ENST00000380006.2
External Link RMBase: m6A_site_320244
mod ID: M6ASITE026956 Click to Show/Hide the Full List
mod site chr16:48361922-48361923:- [5]
Sequence TATAGTTTTTCTTGCTACAGACATTAATCTTCCTGGTGCTG
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000380006.2; ENST00000356721.3; ENST00000394725.3; ENST00000568007.5
External Link RMBase: m6A_site_320250
mod ID: M6ASITE026957 Click to Show/Hide the Full List
mod site chr16:48361962-48361963:- [3]
Sequence TGCATCAGCATAAGTCCATTACAACCCTACAGGGAGAGGAT
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000380006.2; ENST00000356721.3; ENST00000568007.5; ENST00000394725.3
External Link RMBase: m6A_site_320252
mod ID: M6ASITE026958 Click to Show/Hide the Full List
mod site chr16:48362081-48362082:- [5]
Sequence GCCACACACAGAAAAAGCAGACCATGAAGAGCTCTGTGAGT
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000568007.5; ENST00000380006.2; ENST00000394725.3; ENST00000356721.3
External Link RMBase: m6A_site_320258
mod ID: M6ASITE026959 Click to Show/Hide the Full List
mod site chr16:48362098-48362099:- [3]
Sequence GGATGTGAAATAACTCTGCCACACACAGAAAAAGCAGACCA
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000394725.3; ENST00000380006.2; ENST00000356721.3; ENST00000568007.5
External Link RMBase: m6A_site_320259
mod ID: M6ASITE026960 Click to Show/Hide the Full List
mod site chr16:48362220-48362221:- [6]
Sequence GCAACTGTCGCCCAAAGCTCACATGTTGTCCAACTTGCCGG
Motif Score 2.047297619
Cell/Tissue List HEK293; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000568007.5; ENST00000394725.3; ENST00000563745.1; ENST00000356721.3; ENST00000380006.2
External Link RMBase: m6A_site_320263
mod ID: M6ASITE026961 Click to Show/Hide the Full List
mod site chr16:48362333-48362334:- [3]
Sequence GACTGGCACAACTGCATCCAACAATGACTTGGCGAGTCTTT
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T; A549
Seq Type List MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000563745.1; ENST00000568007.5; ENST00000356721.3; ENST00000394725.3; ENST00000380006.2
External Link RMBase: m6A_site_320269
mod ID: M6ASITE026962 Click to Show/Hide the Full List
mod site chr16:48362346-48362347:- [3]
Sequence GGGTGCCTGCCCTGACTGGCACAACTGCATCCAACAATGAC
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000568007.5; ENST00000380006.2; ENST00000394725.3; ENST00000563745.1; ENST00000356721.3
External Link RMBase: m6A_site_320270
mod ID: M6ASITE026963 Click to Show/Hide the Full List
mod site chr16:48362409-48362410:- [6]
Sequence AAATGAGCCGTCAGACTGCTACAGCATTACCTACCGGTACC
Motif Score 2.078666667
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000563745.1; ENST00000394725.3; ENST00000568007.5; ENST00000356721.3; ENST00000380006.2
External Link RMBase: m6A_site_320272
mod ID: M6ASITE026964 Click to Show/Hide the Full List
mod site chr16:48362415-48362416:- [5]
Sequence TTTCAGAAATGAGCCGTCAGACTGCTACAGCATTACCTACC
Motif Score 3.319380952
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1B; hESCs; fibroblasts; GM12878; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000380006.2; ENST00000563745.1; ENST00000356721.3; ENST00000568007.5; ENST00000394725.3
External Link RMBase: m6A_site_320273
mod ID: M6ASITE026965 Click to Show/Hide the Full List
mod site chr16:48362496-48362497:- [5]
Sequence AAAGGACTTATGGCATGTAAACATTATTTATAAAGTAAGTC
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; GM12878; Huh7; iSLK; MSC; TIME; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000394725.3; ENST00000568007.5; ENST00000356721.3; ENST00000380006.2; ENST00000563745.1
External Link RMBase: m6A_site_320274
mod ID: M6ASITE026966 Click to Show/Hide the Full List
mod site chr16:48362511-48362512:- [5]
Sequence TTGTATGAAACTTTAAAAGGACTTATGGCATGTAAACATTA
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; GM12878; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356721.3; ENST00000380006.2; ENST00000568007.5; ENST00000394725.3; ENST00000563745.1
External Link RMBase: m6A_site_320275
mod ID: M6ASITE026967 Click to Show/Hide the Full List
mod site chr16:48362522-48362523:- [5]
Sequence CTCAGTAAATTTTGTATGAAACTTTAAAAGGACTTATGGCA
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; GM12878; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000356721.3; ENST00000568007.5; ENST00000394725.3; ENST00000563745.1; ENST00000380006.2
External Link RMBase: m6A_site_320276
mod ID: M6ASITE026968 Click to Show/Hide the Full List
mod site chr16:48362651-48362652:- [7]
Sequence AGTTCCACATGTTTTCCGGAACATTTTGAAAAGAGAGCTTA
Motif Score 2.951386905
Cell/Tissue List HEK293T
Seq Type List MeRIP-seq
Transcript ID List ENST00000394725.3; ENST00000380006.2; ENST00000563745.1; ENST00000356721.3; ENST00000568007.5
External Link RMBase: m6A_site_320277
mod ID: M6ASITE026969 Click to Show/Hide the Full List
mod site chr16:48362767-48362768:- [7]
Sequence AGCAAAACGGATTCGATTAAACTTCAGTTCCTTGTATAGTT
Motif Score 2.627720238
Cell/Tissue List HEK293T
Seq Type List MeRIP-seq
Transcript ID List ENST00000380006.2; ENST00000356721.3; ENST00000394725.3; ENST00000568007.5; ENST00000563745.1
External Link RMBase: m6A_site_320285
mod ID: M6ASITE026970 Click to Show/Hide the Full List
mod site chr16:48362905-48362906:- [8]
Sequence GGTGAAGTCCTCGGATGCAGACCGTGTGGATACAGAGTGCC
Motif Score 2.876744048
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000394725.3; ENST00000380006.2; ENST00000563745.1; ENST00000356721.3; ENST00000568007.5
External Link RMBase: m6A_site_320288
mod ID: M6ASITE026971 Click to Show/Hide the Full List
mod site chr16:48362986-48362987:- [8]
Sequence TATGTAAATAGTTGTTATAGACTGTATTTTAAAAATTTTGT
Motif Score 3.319380952
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000563745.1; ENST00000394725.3; ENST00000568007.5; ENST00000380006.2; ENST00000356721.3
External Link RMBase: m6A_site_320290
mod ID: M6ASITE026972 Click to Show/Hide the Full List
mod site chr16:48363010-48363011:- [8]
Sequence GATTACTTAATACAATGTAAACAATATGTAAATAGTTGTTA
Motif Score 2.20572619
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000380006.2; ENST00000568007.5; ENST00000394725.3; ENST00000356721.3; ENST00000563745.1
External Link RMBase: m6A_site_320291
mod ID: M6ASITE026973 Click to Show/Hide the Full List
mod site chr16:48365401-48365402:- [5]
Sequence CATGTTTACCAGCGGCCAGGACAAGGAAGAGAAAAGGTATT
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34
Seq Type List m6A-seq
Transcript ID List ENST00000568007.5; ENST00000356721.3; ENST00000573005.1; ENST00000394725.3; ENST00000563745.1
External Link RMBase: m6A_site_320292
mod ID: M6ASITE026974 Click to Show/Hide the Full List
mod site chr16:48365727-48365728:- [9]
Sequence AGCTTAGGGCACATTGGAGGACAGCGCAGCTGTGGCTCCCA
Motif Score 3.643047619
Cell/Tissue List A549
Seq Type List MeRIP-seq
Transcript ID List ENST00000563745.1; ENST00000356721.3; ENST00000394725.3; ENST00000568007.5
External Link RMBase: m6A_site_320293
mod ID: M6ASITE026975 Click to Show/Hide the Full List
mod site chr16:48385234-48385235:- [5]
Sequence CGGAGCGCGTTGGTGCCAGGACCGGGGTCCGAGGCGCGCTC
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq
Transcript ID List ENST00000563745.1; ENST00000568007.5; ENST00000394725.3
External Link RMBase: m6A_site_320294