General Information of the Epigenetic Target (ID: EPITAR00290)
Target Name Y-box-binding protein 1 (YBX1)
Synonyms
YB-1; CCAAT-binding transcription factor I subunit A; CBF-A; DNA-binding protein B; DBPB; Enhancer factor I subunit A; EFI-A; Nuclease-sensitive element-binding protein 1; Y-box transcription factor; NSEP1; YB1
    Click to Show/Hide
Gene Name YBX1
Sequence
MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE
    Click to Show/Hide
Family YBX1 family
Function
DNA- and RNA-binding protein involved in various processes, such as translational repression, RNA stabilization, mRNA splicing, DNA repair and transcription regulation. Predominantly acts as a RNA-binding protein: binds preferentially to the 5'-[CU]CUGCG-3' RNA motif and specifically recognizes mRNA transcripts modified by C5-methylcytosine (m5C). Promotes mRNA stabilization: acts by binding to m5C-containing mRNAs and recruiting the mRNA stability maintainer ELAVL1, thereby preventing mRNA decay. Component of the CRD-mediated complex that promotes MYC mRNA stability. Contributes to the regulation of translation by modulating the interaction between the mRNA and eukaryotic initiation factors (By similarity). Plays a key role in RNA composition of extracellular exosomes by defining the sorting of small non-coding RNAs, such as tRNAs, Y RNAs, Vault RNAs and miRNAs. Probably sorts RNAs in exosomes by recognizing and binding C5-methylcytosine (m5C)-containing RNAs. Acts as a key effector of epidermal progenitors by preventing epidermal progenitor senescence: acts by regulating the translation of a senescence-associated subset of cytokine mRNAs, possibly by binding to m5C-containing mRNAs. Also involved in pre-mRNA alternative splicing regulation: binds to splice sites in pre-mRNA and regulates splice site selection. Also able to bind DNA: regulates transcription of the multidrug resistance gene MDR1 is enhanced in presence of the APEX1 acetylated form at 'Lys-6' and 'Lys-7'. Binds to promoters that contain a Y-box (5'-CTGATTGGCCAA-3'), such as MDR1 and HLA class II genes. Promotes separation of DNA strands that contain mismatches or are modified by cisplatin. Has endonucleolytic activity and can introduce nicks or breaks into double-stranded DNA, suggesting a role in DNA repair. The secreted form acts as an extracellular mitogen and stimulates cell migration and proliferation.
    Click to Show/Hide
Gene ID 4904
HGNC ID HGNC:8014
Ensembl Gene ID ENSG00000065978
KEGG ID hsa:4904
Chromosomal Location 1p34.2
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00290)
Y-box-binding protein 1 (YBX1)
Adenosine-to-Inosine editing (A-to-I)
In total 2 m6A sequence/site(s) in this target gene
mod ID: A2ISITE007106 Click to Show/Hide the Full List
mod site chr1:42691887-42691888:+ [1]
Sequence TTTATTTTTTTTGAGATGGAATCTCACTCTGTTGCCCAGGC
Transcript ID List ENST00000332220.10; ENST00000321358.12; ENST00000436427.1; ENST00000467957.1
External Link RMBase: RNA-editing_site_4808
mod ID: A2ISITE007107 Click to Show/Hide the Full List
mod site chr1:42699681-42699682:+ [2]
Sequence TGTTACTCAAGCAGTCTTGAACTCCTGCCCTCAAGTGATCC
Transcript ID List ENST00000436427.1; ENST00000321358.12
External Link RMBase: RNA-editing_site_4809
2'-O-Methylation (2'-O-Me)
In total 1 m6A sequence/site(s) in this target gene
mod ID: 2OMSITE000080 Click to Show/Hide the Full List
mod site chr1:42696902-42696903:+ [3]
Sequence GGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCT
Cell/Tissue List HEK293
Seq Type List Nm-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12; ENST00000332220.10; ENST00000467957.1
External Link RMBase: Nm_site_157
N6-methyladenosine (m6A)
In total 43 m6A sequence/site(s) in this target gene
mod ID: M6ASITE020810 Click to Show/Hide the Full List
mod site chr1:42682456-42682457:+ [4]
Sequence GTAGCGGGAGCGGAGAGCGGACCCCAGAGAGCCCTGAGCAG
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000332220.10; ENST00000321358.12
External Link RMBase: m6A_site_26029
mod ID: M6ASITE020811 Click to Show/Hide the Full List
mod site chr1:42682508-42682509:+ [5]
Sequence CCGCCGGCCTAGTTACCATCACACCCCGGGAGGAGCCGCAG
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000332220.10; ENST00000321358.12
External Link RMBase: m6A_site_26030
mod ID: M6ASITE020812 Click to Show/Hide the Full List
mod site chr1:42682583-42682584:+ [4]
Sequence CCATGAGCAGCGAGGCCGAGACCCAGCAGCCGCCCGCCGCC
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000332220.10; ENST00000321358.12
External Link RMBase: m6A_site_26031
mod ID: M6ASITE020813 Click to Show/Hide the Full List
mod site chr1:42682635-42682636:+ [6]
Sequence CCCCGCCCTCAGCGCCGCCGACACCAAGCCCGGCACTACGG
Motif Score 2.865571429
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000321358.12; ENST00000332220.10
External Link RMBase: m6A_site_26032
mod ID: M6ASITE020814 Click to Show/Hide the Full List
mod site chr1:42682637-42682638:+ [6]
Sequence CCGCCCTCAGCGCCGCCGACACCAAGCCCGGCACTACGGGC
Motif Score 2.064285714
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000332220.10; ENST00000321358.12
External Link RMBase: m6A_site_26033
mod ID: M6ASITE020815 Click to Show/Hide the Full List
mod site chr1:42682649-42682650:+ [6]
Sequence CCGCCGACACCAAGCCCGGCACTACGGGCAGCGGCGCAGGG
Motif Score 3.252583333
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000332220.10; ENST00000321358.12
External Link RMBase: m6A_site_26034
mod ID: M6ASITE020816 Click to Show/Hide the Full List
mod site chr1:42682691-42682692:+ [5]
Sequence GCGGTGGCCCGGGCGGCCTCACATCGGCGGCGCCTGCCGGC
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000332220.10; ENST00000321358.12
External Link RMBase: m6A_site_26035
mod ID: M6ASITE020817 Click to Show/Hide the Full List
mod site chr1:42682716-42682717:+ [7]
Sequence GGCGGCGCCTGCCGGCGGGGACAAGAAGGTCATCGGTGAGG
Motif Score 3.643047619
Cell/Tissue List CD34; HepG2; HeLa; A549; U2OS; MT4; H1299; MM6; Jurkat; GSC-11; iSLK; MSC; TREX; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000332220.10; ENST00000321358.12
External Link RMBase: m6A_site_26036
mod ID: M6ASITE020818 Click to Show/Hide the Full List
mod site chr1:42683252-42683253:+ [6]
Sequence CGTGTGCGGCGGCGGCGGCGACTGCGTGGCCCCGCACCCGG
Motif Score 3.287565476
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000436427.1; ENST00000467957.1; ENST00000332220.10; ENST00000321358.12
External Link RMBase: m6A_site_26037
mod ID: M6ASITE020819 Click to Show/Hide the Full List
mod site chr1:42683419-42683420:+ [4]
Sequence CAGCAACGAAGGTTTTGGGAACAGTAAAATGGTTCAATGTA
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; HEK293T; A549; LCLs; H1299; MM6; Huh7
Seq Type List m6A-seq; DART-seq; MeRIP-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12; ENST00000332220.10; ENST00000467957.1
External Link RMBase: m6A_site_26038
mod ID: M6ASITE020820 Click to Show/Hide the Full List
mod site chr1:42683444-42683445:+ [6]
Sequence AAAATGGTTCAATGTAAGGAACGGATATGGTTTCATCAACA
Motif Score 2.925321429
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000321358.12; ENST00000467957.1; ENST00000436427.1; ENST00000332220.10
External Link RMBase: m6A_site_26039
mod ID: M6ASITE020821 Click to Show/Hide the Full List
mod site chr1:42693516-42693517:+ [5]
Sequence ACCAAGGAAGATGTATTTGTACACCAGGTGAGTGCTTGTGT
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000467957.1; ENST00000332220.10; ENST00000436427.1; ENST00000321358.12
External Link RMBase: m6A_site_26040
mod ID: M6ASITE020822 Click to Show/Hide the Full List
mod site chr1:42696217-42696218:+ [8]
Sequence GACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCA
Motif Score 2.147452381
Cell/Tissue List AML
Seq Type List miCLIP
Transcript ID List ENST00000321358.12; ENST00000332220.10; ENST00000436427.1; ENST00000467957.1
External Link RMBase: m6A_site_26041
mod ID: M6ASITE020823 Click to Show/Hide the Full List
mod site chr1:42696255-42696256:+ [4]
Sequence GCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGTT
Motif Score 3.319380952
Cell/Tissue List HeLa; CD34; BGC823; LCLs; A549; H1299; MM6; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000332220.10; ENST00000321358.12; ENST00000467957.1; ENST00000436427.1
External Link RMBase: m6A_site_26042
mod ID: M6ASITE020824 Click to Show/Hide the Full List
mod site chr1:42696662-42696663:+ [6]
Sequence GTGCGGAGGCAGCAAATGTTACAGGTCCTGGTGGTGTTCCA
Motif Score 2.07285119
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12; ENST00000332220.10; ENST00000467957.1
External Link RMBase: m6A_site_26043
mod ID: M6ASITE020825 Click to Show/Hide the Full List
mod site chr1:42696708-42696709:+ [4]
Sequence AGGCAGTAAATATGCAGCAGACCGTAACCATTATAGACGCT
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; BGC823; A549; H1299; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12; ENST00000467957.1; ENST00000332220.10
External Link RMBase: m6A_site_26044
mod ID: M6ASITE020826 Click to Show/Hide the Full List
mod site chr1:42696751-42696752:+ [6]
Sequence CCACGTCGTAGGGGTCCTCCACGCAATTACCAGCAAAATTA
Motif Score 2.027047619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000436427.1; ENST00000467957.1; ENST00000321358.12; ENST00000332220.10
External Link RMBase: m6A_site_26045
mod ID: M6ASITE020827 Click to Show/Hide the Full List
mod site chr1:42696759-42696760:+ [6]
Sequence TAGGGGTCCTCCACGCAATTACCAGCAAAATTACCAGAATA
Motif Score 2.052208333
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000321358.12; ENST00000467957.1; ENST00000332220.10; ENST00000436427.1
External Link RMBase: m6A_site_26046
mod ID: M6ASITE020828 Click to Show/Hide the Full List
mod site chr1:42696835-42696836:+ [5]
Sequence GCTCCCGAAGGCCAGGCCCAACAACGCCGGCCCTACCGCAG
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12; ENST00000467957.1; ENST00000332220.10
External Link RMBase: m6A_site_26047
mod ID: M6ASITE020829 Click to Show/Hide the Full List
mod site chr1:42696876-42696877:+ [5]
Sequence GCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGGGC
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12; ENST00000332220.10; ENST00000467957.1
External Link RMBase: m6A_site_26048
mod ID: M6ASITE020830 Click to Show/Hide the Full List
mod site chr1:42696886-42696887:+ [4]
Sequence CCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACA
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; MT4; A549; H1299; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000321358.12; ENST00000467957.1; ENST00000332220.10; ENST00000436427.1
External Link RMBase: m6A_site_26049
mod ID: M6ASITE020831 Click to Show/Hide the Full List
mod site chr1:42697186-42697187:+ [5]
Sequence TTGTCTTTTTCAGGGTGCTGACAACCAGGGTGCAGGAGAAC
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000436427.1; ENST00000332220.10; ENST00000321358.12; ENST00000467957.1
External Link RMBase: m6A_site_26050
mod ID: M6ASITE020832 Click to Show/Hide the Full List
mod site chr1:42697205-42697206:+ [4]
Sequence GACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGGCA
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; hESC-HEK293T; HepG2; MT4; A549; H1299; Huh7
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12; ENST00000467957.1; ENST00000332220.10
External Link RMBase: m6A_site_26051
mod ID: M6ASITE020833 Click to Show/Hide the Full List
mod site chr1:42697214-42697215:+ [4]
Sequence GGTGCAGGAGAACAAGGTAGACCAGTGAGGCAGAATATGTA
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; MT4; A549; H1299; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000332220.10; ENST00000436427.1; ENST00000321358.12
External Link RMBase: m6A_site_26052
mod ID: M6ASITE020834 Click to Show/Hide the Full List
mod site chr1:42697247-42697248:+ [4]
Sequence AATATGTATCGGGGATATAGACCACGATTCCGCAGGTATGG
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; hNPCs; MT4; A549; H1299; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000332220.10; ENST00000436427.1; ENST00000321358.12
External Link RMBase: m6A_site_26053
mod ID: M6ASITE020835 Click to Show/Hide the Full List
mod site chr1:42700798-42700799:+ [4]
Sequence AGGGGCCCTCCTCGCCAAAGACAGCCTAGAGAGGACGGCAA
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HEK293T; HepG2; hNPCs; MT4; A549; H1299; Huh7
Seq Type List m6A-seq; DART-seq; MeRIP-seq
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: m6A_site_26054
mod ID: M6ASITE020836 Click to Show/Hide the Full List
mod site chr1:42700850-42700851:+ [4]
Sequence AAGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCT
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; hNPCs; LCLs; MT4; A549; H1299; MM6; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12
External Link RMBase: m6A_site_26055
mod ID: M6ASITE020837 Click to Show/Hide the Full List
mod site chr1:42700890-42700891:+ [6]
Sequence TCAACGTCGGTACCGCCGCAACTTCAATTACCGACGCAGAC
Motif Score 2.595904762
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12
External Link RMBase: m6A_site_26056
mod ID: M6ASITE020838 Click to Show/Hide the Full List
mod site chr1:42700909-42700910:+ [6]
Sequence AACTTCAATTACCGACGCAGACGCCCAGAAAACCCTAAACC
Motif Score 2.871321429
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12
External Link RMBase: m6A_site_26057
mod ID: M6ASITE020839 Click to Show/Hide the Full List
mod site chr1:42700920-42700921:+ [7]
Sequence CCGACGCAGACGCCCAGAAAACCCTAAACCACAAGATGGCA
Motif Score 2.185083333
Cell/Tissue List CD34; HepG2; hNPCs; LCLs; A549; H1299; MM6; Huh7; CD4T; peripheral-blood; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: m6A_site_26058
mod ID: M6ASITE020840 Click to Show/Hide the Full List
mod site chr1:42700927-42700928:+ [7]
Sequence AGACGCCCAGAAAACCCTAAACCACAAGATGGCAAAGAGAC
Motif Score 2.185083333
Cell/Tissue List CD34; HepG2; hNPCs; LCLs; A549; H1299; MM6; Huh7; CD4T; peripheral-blood; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: m6A_site_26059
mod ID: M6ASITE020841 Click to Show/Hide the Full List
mod site chr1:42700930-42700931:+ [9]
Sequence CGCCCAGAAAACCCTAAACCACAAGATGGCAAAGAGACAAA
Motif Score 2.053113095
Cell/Tissue List brain; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: m6A_site_26060
mod ID: M6ASITE020842 Click to Show/Hide the Full List
mod site chr1:42700946-42700947:+ [7]
Sequence AACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCA
Motif Score 2.897386905
Cell/Tissue List CD34; HEK293T; hESC-HEK293T; HepG2; HeLa; hNPCs; LCLs; A549; H1299; MM6; Huh7; CD4T; peripheral-blood; endometrial; NB4
Seq Type List m6A-seq; DART-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: m6A_site_26061
mod ID: M6ASITE020843 Click to Show/Hide the Full List
mod site chr1:42701992-42701993:+ [5]
Sequence CTTTACAGTTTAGTCATCCAACAAGAAGAAATATGAAATTC
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: m6A_site_26062
mod ID: M6ASITE020844 Click to Show/Hide the Full List
mod site chr1:42702029-42702030:+ [6]
Sequence ATTCCAGCAATAAGAAATGAACAAAAGATTGGAGCTGAAGA
Motif Score 2.951386905
Cell/Tissue List HEK293T; hESC-HEK293T; HeLa; hNPCs; LCLs; A549; H1299; MM6; Huh7; CD4T; peripheral-blood; endometrial; NB4
Seq Type List DART-seq; MAZTER-seq; m6A-seq; MeRIP-seq
Transcript ID List ENST00000436427.1; rmsk_99072; ENST00000321358.12
External Link RMBase: m6A_site_26063
mod ID: M6ASITE020845 Click to Show/Hide the Full List
mod site chr1:42702049-42702050:+ [4]
Sequence ACAAAAGATTGGAGCTGAAGACCTAAAGTGCTTGCTTTTTG
Motif Score 2.876744048
Cell/Tissue List HeLa; hNPCs; LCLs; A549; H1299; MM6; Huh7; AML
Seq Type List m6A-seq; MeRIP-seq; miCLIP
Transcript ID List ENST00000436427.1; ENST00000321358.12
External Link RMBase: m6A_site_26064
mod ID: M6ASITE020846 Click to Show/Hide the Full List
mod site chr1:42702077-42702078:+ [6]
Sequence TGCTTGCTTTTTGCCCGTTGACCAGATAAATAGAACTATCT
Motif Score 2.839113095
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12
External Link RMBase: m6A_site_26065
mod ID: M6ASITE020847 Click to Show/Hide the Full List
mod site chr1:42702091-42702092:+ [4]
Sequence CCGTTGACCAGATAAATAGAACTATCTGCATTATCTATGCA
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; hNPCs; LCLs; H1299; Huh7
Seq Type List m6A-seq; DART-seq; MeRIP-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12
External Link RMBase: m6A_site_26066
mod ID: M6ASITE020848 Click to Show/Hide the Full List
mod site chr1:42702134-42702135:+ [6]
Sequence ATGGGGTTTTTATTATTTTTACCTAAAGACGTCTCTTTTTG
Motif Score 2.052208333
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: m6A_site_26067
mod ID: M6ASITE020849 Click to Show/Hide the Full List
mod site chr1:42702161-42702162:+ [6]
Sequence GACGTCTCTTTTTGGTAATAACAAACGTGTTTTTTAAAAAA
Motif Score 2.168095238
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: m6A_site_26068
mod ID: M6ASITE020850 Click to Show/Hide the Full List
mod site chr1:42702165-42702166:+ [6]
Sequence TCTCTTTTTGGTAATAACAAACGTGTTTTTTAAAAAAGCCT
Motif Score 2.179660714
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: m6A_site_26069
mod ID: M6ASITE020851 Click to Show/Hide the Full List
mod site chr1:42702199-42702200:+ [6]
Sequence AAAGCCTGGTTTTTCTCAATACGCCTTTAAAGGTTTTTAAA
Motif Score 2.084416667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000436427.1; ENST00000321358.12
External Link RMBase: m6A_site_26070
mod ID: M6ASITE020852 Click to Show/Hide the Full List
mod site chr1:42702284-42702285:+ [5]
Sequence TTAATTTGTAATAAAAGTTTACAACTTGATTTTTTCAAAAA
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: m6A_site_26071
Pseudouridine (Pseudo)
In total 1 m6A sequence/site(s) in this target gene
mod ID: PSESITE000035 Click to Show/Hide the Full List
mod site chr1:42702282-42702283:+ [10]
Sequence TTTTAATTTGTAATAAAAGTTTACAACTTGATTTTTTCAAA
Transcript ID List ENST00000321358.12; ENST00000436427.1
External Link RMBase: Pseudo_site_140