General Information of the Epigenetic Target (ID: EPITAR00284)
Target Name Integrin subunit beta 3 (ITGB3)
Synonyms
ITGB3; GP3A; integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61); CD61; GPIIIa; platelet glycoprotein IIIa; antigen CD61
    Click to Show/Hide
Gene Name ITGB3
Sequence
MRARPRPRPLWATVLALGALAGVGVGGPNICTTRGVSSCQQCLAVSPMCAWCSDEALPLGSPRCDLKENLLKDNCAPESIEFPVSEARVLEDRPLSDKGSGDSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEPECPKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEATSTFTNITYRGT
    Click to Show/Hide
Family Integrin beta chain family
Function
Integrin alpha-V/beta-3 (ITGAV:ITGB3) is a receptor for cytotactin, fibronectin, laminin, matrix metalloproteinase-2, osteopontin, osteomodulin, prothrombin, thrombospondin, vitronectin and von Willebrand factor. Integrin alpha-IIb/beta-3 (ITGA2B:ITGB3) is a receptor for fibronectin, fibrinogen, plasminogen, prothrombin, thrombospondin and vitronectin. Integrins alpha-IIb/beta-3 and alpha-V/beta-3 recognize the sequence R-G-D in a wide array of ligands. Integrin alpha-IIb/beta-3 recognizes the sequence H-H-L-G-G-G-A-K-Q-A-G-D-V in fibrinogen gamma chain. Following activation integrin alpha-IIb/beta-3 brings about platelet/platelet interaction through binding of soluble fibrinogen. This step leads to rapid platelet aggregation which physically plugs ruptured endothelial surface. Fibrinogen binding enhances SELP expression in activated platelets (By similarity). ITGAV:ITGB3 binds to fractalkine (CX3CL1) and acts as its coreceptor in CX3CR1-dependent fractalkine signaling. ITGAV:ITGB3 binds to NRG1 (via EGF domain) and this binding is essential for NRG1-ERBB signaling. ITGAV:ITGB3 binds to FGF1 and this binding is essential for FGF1 signaling. ITGAV:ITGB3 binds to FGF2 and this binding is essential for FGF2 signaling. ITGAV:ITGB3 binds to IGF1 and this binding is essential for IGF1 signaling. ITGAV:ITGB3 binds to IGF2 and this binding is essential for IGF2 signaling. ITGAV:ITGB3 binds to IL1B and this binding is essential for IL1B signaling. ITGAV:ITGB3 binds to PLA2G2A via a site (site 2) which is distinct from the classical ligand-binding site (site 1) and this induces integrin conformational changes and enhanced ligand binding to site 1. ITGAV:ITGB3 acts as a receptor for fibrillin-1 (FBN1) and mediates R-G-D-dependent cell adhesion to FBN1. In brain, plays a role in synaptic transmission and plasticity. Involved in the regulation of the serotonin neurotransmission, is required to localize to specific compartments within the synapse the serotonin receptor SLC6A4 and for an appropriate reuptake of serotonin. Controls excitatory synaptic strength by regulating GRIA2-containing AMPAR endocytosis, which affects AMPAR abundance and composition (By similarity). ITGAV:ITGB3 act as a receptor for CD40LG. (Microbial infection) Integrin ITGAV:ITGB3 acts as a receptor for Herpes virus 8/HHV-8. (Microbial infection) Integrin ITGAV:ITGB3 acts as a receptor for Coxsackievirus A9. (Microbial infection) Acts as a receptor for Hantaan virus. (Microbial infection) Integrin ITGAV:ITGB3 acts as a receptor for Cytomegalovirus/HHV-5. (Microbial infection) Integrin ITGA5:ITGB3 acts as a receptor for Human metapneumovirus. (Microbial infection) Integrin ITGAV:ITGB3 acts aP05556s a receptor for Human parechovirus 1. (Microbial infection) Integrin ITGAV:ITGB3 acts as a receptor for West nile virus. (Microbial infection) In case of HIV-1 infection, the interaction with extracellular viral Tat protein seems to enhance angiogenesis in Kaposi's sarcoma lesions.
    Click to Show/Hide
Gene ID 3690
HGNC ID HGNC:6156
Ensembl Gene ID ENSG00000259207
KEGG ID hsa:3690
Chromosomal Location 17q21.32
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00284)
Integrin subunit beta 3 (ITGB3)
Adenosine-to-Inosine editing (A-to-I)
In total 5 m6A sequence/site(s) in this target gene
mod ID: A2ISITE008218 Click to Show/Hide the Full List
mod site chr17:47299049-47299050:+ [1]
Sequence AAAGGGCAAGAGAGAGGGCAAGAGGCCCAGGAGACTTAGTT
Transcript ID List ENST00000560629.1; ENST00000559488.5
External Link RMBase: RNA-editing_site_58674
mod ID: A2ISITE008219 Click to Show/Hide the Full List
mod site chr17:47309271-47309272:+ [2]
Sequence TCTGTTACCCAGGCTGGTCTAGAACTCCTGGGCTCAAGTGA
Transcript ID List ENST00000560629.1; ENST00000559488.5
External Link RMBase: RNA-editing_site_58675
mod ID: A2ISITE008220 Click to Show/Hide the Full List
mod site chr17:47309299-47309300:+ [2]
Sequence TGGGCTCAAGTGATCTTCCTACCTTGGCCCCTAAAAGTGCT
Transcript ID List ENST00000560629.1; ENST00000559488.5
External Link RMBase: RNA-editing_site_58676
mod ID: A2ISITE008221 Click to Show/Hide the Full List
mod site chr17:47309722-47309723:+ [2]
Sequence GGGCAACATGAAGAAACCCCATCTCTACAAAAAAATGCAAA
Transcript ID List ENST00000560629.1; ENST00000559488.5; rmsk_4706758
External Link RMBase: RNA-editing_site_58677
mod ID: A2ISITE008222 Click to Show/Hide the Full List
mod site chr17:47309839-47309840:+ [2]
Sequence GGGGAGGTGGAGGTTTCAGTAAGCCGAGATTGTGCCACTGC
Transcript ID List rmsk_4706758; ENST00000560629.1; ENST00000559488.5
External Link RMBase: RNA-editing_site_58678
5-methylcytidine (m5C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: M5CSITE001202 Click to Show/Hide the Full List
mod site chr17:47289686-47289687:+
Sequence CTTCATTTTCCTAGGATTATCCCTCTTTGGGGCTGATGACT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000571680.1; ENST00000559488.5; ENST00000560629.1
External Link RMBase: m5C_site_19328
N6-methyladenosine (m6A)
In total 14 m6A sequence/site(s) in this target gene
mod ID: M6ASITE033476 Click to Show/Hide the Full List
mod site chr17:47283462-47283463:+ [3]
Sequence TGAGGCCCGAGTACTAGAGGACAGGCCCCTCAGCGACAAGG
Motif Score 3.643047619
Cell/Tissue List kidney; endometrial
Seq Type List m6A-REF-seq; m6A-seq
Transcript ID List ENST00000559488.5; ENST00000571680.1; ENST00000560629.1
External Link RMBase: m6A_site_368416
mod ID: M6ASITE033477 Click to Show/Hide the Full List
mod site chr17:47283492-47283493:+ [4]
Sequence CAGCGACAAGGGCTCTGGAGACAGCTCCCAGGTCACTCAAG
Motif Score 2.897386905
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000559488.5; ENST00000560629.1; ENST00000571680.1
External Link RMBase: m6A_site_368417
mod ID: M6ASITE033478 Click to Show/Hide the Full List
mod site chr17:47284496-47284497:+ [4]
Sequence GGTGGAGGATTACCCTGTGGACATCTACTACTTGATGGACC
Motif Score 3.643047619
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000571680.1; ENST00000559488.5; ENST00000560629.1
External Link RMBase: m6A_site_368418
mod ID: M6ASITE033479 Click to Show/Hide the Full List
mod site chr17:47284514-47284515:+ [4]
Sequence GGACATCTACTACTTGATGGACCTGTCTTACTCCATGAAGG
Motif Score 3.622404762
Cell/Tissue List endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000560629.1; ENST00000559488.5; ENST00000571680.1
External Link RMBase: m6A_site_368419
mod ID: M6ASITE033480 Click to Show/Hide the Full List
mod site chr17:47292223-47292224:+ [5]
Sequence AAAGCCCGTGGGCTTCAAGGACAGCCTGATCGTCCAGGTCA
Motif Score 3.643047619
Cell/Tissue List GM12878; HEK293A-TOA; MSC; TIME; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000560629.1; ENST00000559488.5
External Link RMBase: m6A_site_368420
mod ID: M6ASITE033481 Click to Show/Hide the Full List
mod site chr17:47292281-47292282:+ [6]
Sequence GCCTGCCAGGCCCAAGCTGAACCTAATAGCCATCGCTGCAA
Motif Score 2.930744048
Cell/Tissue List U2OS; fibroblasts; GM12878; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000560629.1; ENST00000559488.5
External Link RMBase: m6A_site_368421
mod ID: M6ASITE033482 Click to Show/Hide the Full List
mod site chr17:47292315-47292316:+ [7]
Sequence GCTGCAACAATGGCAATGGGACCTTTGAGTGTGGGGTATGC
Motif Score 3.622404762
Cell/Tissue List HeLa; U2OS; fibroblasts; GM12878; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000560629.1; ENST00000559488.5
External Link RMBase: m6A_site_368422
mod ID: M6ASITE033483 Click to Show/Hide the Full List
mod site chr17:47292385-47292386:+ [7]
Sequence GTGTGAGTGCTCAGAGGAGGACTATCGCCCTTCCCAGCAGG
Motif Score 4.065041667
Cell/Tissue List HeLa; A549; U2OS; fibroblasts; GM12878; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A; GSCs
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000560629.1; ENST00000559488.5
External Link RMBase: m6A_site_368423
mod ID: M6ASITE033484 Click to Show/Hide the Full List
mod site chr17:47292547-47292548:+ [3]
Sequence CGACTTCTCCTGTGTCCGCTACAAGGGGGAGATGTGCTCAG
Motif Score 2.078666667
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000559488.5; ENST00000560629.1
External Link RMBase: m6A_site_368424
mod ID: M6ASITE033485 Click to Show/Hide the Full List
mod site chr17:47299331-47299332:+ [8]
Sequence TGGCCAGTGCAGCTGTGGGGACTGCCTGTGTGACTCCGACT
Motif Score 4.065041667
Cell/Tissue List GSC-11; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000559488.5; ENST00000560629.1
External Link RMBase: m6A_site_368425
mod ID: M6ASITE033486 Click to Show/Hide the Full List
mod site chr17:47299354-47299355:+ [8]
Sequence GCCTGTGTGACTCCGACTGGACCGGCTACTACTGCAACTGT
Motif Score 3.622404762
Cell/Tissue List GSC-11; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000559488.5; ENST00000560629.1
External Link RMBase: m6A_site_368426
mod ID: M6ASITE033487 Click to Show/Hide the Full List
mod site chr17:47307561-47307562:+ [9]
Sequence GCCGCCCTGCTCATCTGGAAACTCCTCATCACCATCCACGA
Motif Score 2.627720238
Cell/Tissue List MT4
Seq Type List MeRIP-seq
Transcript ID List ENST00000560629.1; ENST00000559488.5
External Link RMBase: m6A_site_368427
mod ID: M6ASITE033488 Click to Show/Hide the Full List
mod site chr17:47307632-47307633:+ [9]
Sequence ACGCGCCAGAGCAAAATGGGACACAGTAAGAGACGGGGCTG
Motif Score 3.643047619
Cell/Tissue List MT4
Seq Type List MeRIP-seq
Transcript ID List ENST00000560629.1; ENST00000559488.5
External Link RMBase: m6A_site_368428
mod ID: M6ASITE033489 Click to Show/Hide the Full List
mod site chr17:47310280-47310281:+ [10]
Sequence TGCCATCATGTTTACAGAGGACAGTATTTGTGGGGAGGGAT
Motif Score 3.643047619
Cell/Tissue List fibroblasts
Seq Type List m6A-seq
Transcript ID List ENST00000559488.5; ENST00000560629.1
External Link RMBase: m6A_site_368429