General Information of the Epigenetic Target (ID: EPITAR00272)
Target Name Heterogeneous nuclear ribonucleoprotein D (HNRNPD)
Synonyms
AUF1; HNRPD; heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD); AU-rich element RNA binding protein 1, 37kDa
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Gene Name HNRNPD
Sequence
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY
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Function
Binds with high affinity to RNA molecules that contain AU-rich elements (AREs) found within the 3'-UTR of many proto-oncogenes and cytokine mRNAs. Also binds to double- and single-stranded DNA sequences in a specific manner and functions a transcription factor. Each of the RNA-binding domains specifically can bind solely to a single-stranded non-monotonous 5'-UUAG-3' sequence and also weaker to the single-stranded 5'-TTAGGG-3' telomeric DNA repeat. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. Binding of RRM1 to DNA inhibits the formation of DNA quadruplex structure which may play a role in telomere elongation. May be involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain. May play a role in the regulation of the rhythmic expression of circadian clock core genes. Directly binds to the 3'UTR of CRY1 mRNA and induces CRY1 rhythmic translation. May also be involved in the regulation of PER2 translation.
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Gene ID 3184
HGNC ID HGNC:5036
Ensembl Gene ID ENSG00000138668
KEGG ID hsa:3184
Chromosomal Location 4q21.22
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00272)
Heterogeneous nuclear ribonucleoprotein D (HNRNPD)
N4-acetylcytidine (ac4C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: AC4SITE000087 Click to Show/Hide the Full List
mod site chr4:82373899-82373900:- [1]
Sequence CTTATTCTTTTTTAGTGCAGCGGGAGAGAGCGGGAGTGTGC
Cell/Tissue List H1
Seq Type List ac4C-seq
Transcript ID List ENST00000513584.1; ENST00000313899.12; ENST00000352301.8; ENST00000353341.8; ENST00000509107.1; ENST00000515432.1; ENST00000503822.1; ENST00000507010.5
External Link RMBase: ac4C_site_1459
Adenosine-to-Inosine editing (A-to-I)
In total 2 m6A sequence/site(s) in this target gene
mod ID: A2ISITE000435 Click to Show/Hide the Full List
mod site chr4:82355855-82355856:- [2]
Sequence ATATCCTTTCTTAGGTGACTAGGCCTGCTGCACAATAATAG
Transcript ID List ENST00000513584.1; ENST00000508119.5; ENST00000514671.5; ENST00000514325.1; ENST00000353341.8; ENST00000352301.8; ENST00000313899.12
External Link RMBase: RNA-editing_site_105493
mod ID: A2ISITE000436 Click to Show/Hide the Full List
mod site chr4:82356706-82356707:- [2]
Sequence TTTGCTGATCTTCTGACTTTAGTGAACCTATTAATGTGCTG
Transcript ID List ENST00000514671.5; ENST00000313899.12; ENST00000352301.8; ENST00000509263.5; ENST00000508119.5; ENST00000353341.8; ENST00000513584.1; ENST00000514325.1
External Link RMBase: RNA-editing_site_105494
5-methylcytidine (m5C)
In total 2 m6A sequence/site(s) in this target gene
mod ID: M5CSITE003320 Click to Show/Hide the Full List
mod site chr4:82358710-82358711:- [3]
Sequence AATTTTTGTTGGTGGCCTTTCTCCAGATACACCTGAAGAGA
Seq Type List Bisulfite-seq
Transcript ID List ENST00000515432.1; ENST00000353341.8; ENST00000514325.1; ENST00000514671.5; ENST00000509263.5; ENST00000507010.5; ENST00000313899.12; ENST00000352301.8; ENST00000513584.1
External Link RMBase: m5C_site_34218
mod ID: M5CSITE003321 Click to Show/Hide the Full List
mod site chr4:82365667-82365668:-
Sequence AGGTTGAAGTGAGCCAGGATCACACCATTGCACCACAGCCT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000503822.1; ENST00000313899.12; ENST00000509263.5; ENST00000513584.1; ENST00000515432.1; ENST00000507010.5; ENST00000352301.8; ENST00000353341.8; rmsk_1360721; ENST00000509107.1
External Link RMBase: m5C_site_34219
N6-methyladenosine (m6A)
In total 48 m6A sequence/site(s) in this target gene
mod ID: M6ASITE066251 Click to Show/Hide the Full List
mod site chr4:82352612-82352613:- [4]
Sequence CTTTACAGAAAAGTTTGCTGACTCATGGTCAAAATAAATGA
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000313899.12; rmsk_1360707
External Link RMBase: m6A_site_642157
mod ID: M6ASITE066252 Click to Show/Hide the Full List
mod site chr4:82352670-82352671:- [4]
Sequence GGTAGAGTTTAGTAGTTAGGACAGAGACCTGCAAAGCAAAA
Motif Score 3.643047619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List rmsk_1360707; ENST00000313899.12
External Link RMBase: m6A_site_642158
mod ID: M6ASITE066253 Click to Show/Hide the Full List
mod site chr4:82353382-82353383:- [5]
Sequence GATTTTTAGAGCTGTGGTGGACTTCATAGATGAATTCAAGT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; Huh7
Seq Type List m6A-seq; DART-seq; MeRIP-seq
Transcript ID List ENST00000313899.12
External Link RMBase: m6A_site_642159
mod ID: M6ASITE066254 Click to Show/Hide the Full List
mod site chr4:82353447-82353448:- [5]
Sequence GCTTCCATTAAATAAAAAGGACTTAAAATCTGTTAATTATA
Motif Score 4.065041667
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000313899.12
External Link RMBase: m6A_site_642160
mod ID: M6ASITE066255 Click to Show/Hide the Full List
mod site chr4:82353523-82353524:- [5]
Sequence TATGTATTGTGCTTTTTAGAACAAATCTGGATAAATGTGCA
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000313899.12
External Link RMBase: m6A_site_642161
mod ID: M6ASITE066256 Click to Show/Hide the Full List
mod site chr4:82353606-82353607:- [4]
Sequence TTGTTGGTTGTTTTAATAATACTTCCTTATGTAGCCATTAA
Motif Score 2.53247619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000313899.12
External Link RMBase: m6A_site_642162
mod ID: M6ASITE066257 Click to Show/Hide the Full List
mod site chr4:82353732-82353733:- [5]
Sequence CAGGCTTGCCGAAATTGAGGACATGATTAAAATTGCAGTGA
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000313899.12
External Link RMBase: m6A_site_642163
mod ID: M6ASITE066258 Click to Show/Hide the Full List
mod site chr4:82353753-82353754:- [5]
Sequence TAAAAGCATAAGTTTGGAAGACAGGCTTGCCGAAATTGAGG
Motif Score 2.897386905
Cell/Tissue List HeLa; brain; kidney
Seq Type List m6A-seq; m6A-REF-seq
Transcript ID List ENST00000313899.12
External Link RMBase: m6A_site_642164
mod ID: M6ASITE066259 Click to Show/Hide the Full List
mod site chr4:82353860-82353861:- [4]
Sequence TCATGATGTAGTAGTGTCTTACTGGTTTTTTAATAAATCCT
Motif Score 2.494845238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000352301.8; ENST00000514671.5; ENST00000514325.1; ENST00000353341.8; ENST00000313899.12
External Link RMBase: m6A_site_642165
mod ID: M6ASITE066260 Click to Show/Hide the Full List
mod site chr4:82353886-82353887:- [4]
Sequence TGTGTTAAAAGCCCAGTGTGACAGTGTCATGATGTAGTAGT
Motif Score 2.859755952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000353341.8; ENST00000352301.8; ENST00000514325.1; ENST00000514671.5; ENST00000313899.12
External Link RMBase: m6A_site_642166
mod ID: M6ASITE066261 Click to Show/Hide the Full List
mod site chr4:82354080-82354081:- [5]
Sequence ACCTGCTAATAGCAGTTCAAACTAAATTTTTTGTATCAAGT
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq; DART-seq
Transcript ID List ENST00000313899.12; ENST00000352301.8; ENST00000353341.8; ENST00000514325.1; ENST00000514671.5
External Link RMBase: m6A_site_642167
mod ID: M6ASITE066262 Click to Show/Hide the Full List
mod site chr4:82354241-82354242:- [5]
Sequence CAGTATTTACATATAGTGGAACATAGGGATAACTCAGTTTT
Motif Score 2.951386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000352301.8; ENST00000514325.1; ENST00000514671.5; ENST00000353341.8; ENST00000313899.12
External Link RMBase: m6A_site_642168
mod ID: M6ASITE066263 Click to Show/Hide the Full List
mod site chr4:82354285-82354286:- [5]
Sequence GTTCAGCTTTAATTTATAAAACATATCACACATTTAATGTT
Motif Score 2.20572619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000353341.8; ENST00000352301.8; ENST00000313899.12; ENST00000514325.1; ENST00000514671.5
External Link RMBase: m6A_site_642169
mod ID: M6ASITE066264 Click to Show/Hide the Full List
mod site chr4:82355306-82355307:- [6]
Sequence CCATTTGCAACTTATCCCCAACAGGTATGTTCTAAAAATAG
Motif Score 2.173910714
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000513584.1; ENST00000508119.5; ENST00000514671.5; ENST00000313899.12; ENST00000352301.8; ENST00000353341.8; ENST00000514325.1
External Link RMBase: m6A_site_642170
mod ID: M6ASITE066265 Click to Show/Hide the Full List
mod site chr4:82355317-82355318:- [4]
Sequence ACTAAATTATTCCATTTGCAACTTATCCCCAACAGGTATGT
Motif Score 2.595904762
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000514325.1; ENST00000508119.5; ENST00000352301.8; ENST00000353341.8; ENST00000513584.1; ENST00000514671.5; ENST00000313899.12
External Link RMBase: m6A_site_642171
mod ID: M6ASITE066266 Click to Show/Hide the Full List
mod site chr4:82355337-82355338:- [4]
Sequence TCAAAATAGCTACAAACCATACTAAATTATTCCATTTGCAA
Motif Score 2.53247619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000508119.5; ENST00000313899.12; ENST00000353341.8; ENST00000352301.8; ENST00000514325.1; ENST00000514671.5; ENST00000513584.1
External Link RMBase: m6A_site_642172
mod ID: M6ASITE066267 Click to Show/Hide the Full List
mod site chr4:82355342-82355343:- [5]
Sequence GGTCATCAAAATAGCTACAAACCATACTAAATTATTCCATT
Motif Score 2.185083333
Cell/Tissue List HeLa; fibroblasts; LCLs; H1299
Seq Type List m6A-seq
Transcript ID List ENST00000508119.5; ENST00000352301.8; ENST00000514671.5; ENST00000313899.12; ENST00000353341.8; ENST00000514325.1; ENST00000513584.1
External Link RMBase: m6A_site_642173
mod ID: M6ASITE066268 Click to Show/Hide the Full List
mod site chr4:82355346-82355347:- [4]
Sequence AGGTGGTCATCAAAATAGCTACAAACCATACTAAATTATTC
Motif Score 2.078666667
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000352301.8; ENST00000353341.8; ENST00000514671.5; ENST00000313899.12; ENST00000514325.1; ENST00000513584.1; ENST00000508119.5
External Link RMBase: m6A_site_642174
mod ID: M6ASITE066269 Click to Show/Hide the Full List
mod site chr4:82355400-82355401:- [5]
Sequence TAACACTTGTTTTATTTTAGACCAGCAGAGTGGTTATGGGA
Motif Score 2.876744048
Cell/Tissue List HeLa; fibroblasts; LCLs; H1299
Seq Type List m6A-seq
Transcript ID List ENST00000353341.8; ENST00000514325.1; ENST00000313899.12; ENST00000352301.8; ENST00000513584.1; ENST00000508119.5; ENST00000514671.5
External Link RMBase: m6A_site_642175
mod ID: M6ASITE066270 Click to Show/Hide the Full List
mod site chr4:82356565-82356566:- [7]
Sequence ATATGACTACACTGGTTACAACAACTACTATGGATATGGTG
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000353341.8; ENST00000513584.1; ENST00000508119.5; ENST00000509263.5; ENST00000352301.8; ENST00000514671.5; ENST00000514325.1; ENST00000313899.12
External Link RMBase: m6A_site_642176
mod ID: M6ASITE066271 Click to Show/Hide the Full List
mod site chr4:82356613-82356614:- [6]
Sequence CTATGGCAACTATGGATATAACAGCCAAGGTTACGGTGGTT
Motif Score 2.168095238
Cell/Tissue List liver
Seq Type List m6A-REF-seq
Transcript ID List ENST00000353341.8; ENST00000509263.5; ENST00000508119.5; ENST00000352301.8; ENST00000514671.5; ENST00000313899.12; ENST00000513584.1; ENST00000514325.1
External Link RMBase: m6A_site_642177
mod ID: M6ASITE066272 Click to Show/Hide the Full List
mod site chr4:82356649-82356650:- [4]
Sequence CTGGAACCAGGGATATAGTAACTATTGGAATCAAGGCTATG
Motif Score 2.590089286
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000508119.5; ENST00000514671.5; ENST00000509263.5; ENST00000513584.1; ENST00000353341.8; ENST00000313899.12; ENST00000352301.8; ENST00000514325.1
External Link RMBase: m6A_site_642178
mod ID: M6ASITE066273 Click to Show/Hide the Full List
mod site chr4:82356664-82356665:- [5]
Sequence AGGCCCCAGTCAAAACTGGAACCAGGGATATAGTAACTATT
Motif Score 2.930744048
Cell/Tissue List HeLa; fibroblasts; LCLs; H1299
Seq Type List m6A-seq
Transcript ID List ENST00000508119.5; ENST00000353341.8; ENST00000513584.1; ENST00000313899.12; ENST00000509263.5; ENST00000514325.1; ENST00000352301.8; ENST00000514671.5
External Link RMBase: m6A_site_642179
mod ID: M6ASITE066274 Click to Show/Hide the Full List
mod site chr4:82356670-82356671:- [5]
Sequence TGCTGCAGGCCCCAGTCAAAACTGGAACCAGGGATATAGTA
Motif Score 2.627720238
Cell/Tissue List HeLa; fibroblasts; LCLs; H1299
Seq Type List m6A-seq
Transcript ID List ENST00000508119.5; ENST00000514671.5; ENST00000509263.5; ENST00000352301.8; ENST00000513584.1; ENST00000313899.12; ENST00000353341.8; ENST00000514325.1
External Link RMBase: m6A_site_642180
mod ID: M6ASITE066275 Click to Show/Hide the Full List
mod site chr4:82356701-82356702:- [5]
Sequence TGATCTTCTGACTTTAGTGAACCTATTAATGTGCTGCAGGC
Motif Score 2.930744048
Cell/Tissue List HeLa; fibroblasts; LCLs; H1299
Seq Type List m6A-seq
Transcript ID List ENST00000509263.5; ENST00000508119.5; ENST00000514325.1; ENST00000353341.8; ENST00000352301.8; ENST00000313899.12; ENST00000514671.5; ENST00000513584.1
External Link RMBase: m6A_site_642181
mod ID: M6ASITE066276 Click to Show/Hide the Full List
mod site chr4:82356865-82356866:- [5]
Sequence AAAGTAGCCATGTCGAAGGAACAATATCAGCAACAGCAACA
Motif Score 2.951386905
Cell/Tissue List HeLa; hESC-HEK293T; hNPCs; fibroblasts; A549; LCLs; H1299; Huh7
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000353341.8; ENST00000509263.5; ENST00000514325.1; ENST00000313899.12; ENST00000508119.5; ENST00000514671.5; ENST00000513584.1; ENST00000352301.8
External Link RMBase: m6A_site_642182
mod ID: M6ASITE066277 Click to Show/Hide the Full List
mod site chr4:82357331-82357332:- [7]
Sequence GATAATGGAAAAGAAATACCACAATGTTGGTCTTAGTAAAG
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000352301.8; ENST00000353341.8; ENST00000514325.1; ENST00000514671.5; ENST00000509263.5; ENST00000313899.12; ENST00000513584.1; ENST00000508119.5
External Link RMBase: m6A_site_642183
mod ID: M6ASITE066278 Click to Show/Hide the Full List
mod site chr4:82357363-82357364:- [5]
Sequence ATTACCTTTAAGGAAGAAGAACCAGTGAAGAAGATAATGGA
Motif Score 2.930744048
Cell/Tissue List HeLa; hNPCs; fibroblasts; LCLs; H1299; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000509263.5; ENST00000514671.5; ENST00000353341.8; ENST00000513584.1; ENST00000508119.5; ENST00000514325.1; ENST00000313899.12; ENST00000352301.8
External Link RMBase: m6A_site_642184
mod ID: M6ASITE066279 Click to Show/Hide the Full List
mod site chr4:82357410-82357411:- [8]
Sequence AGCTCCCCATGGACAACAAGACCAATAAGAGGCGTGGGTTC
Motif Score 2.876744048
Cell/Tissue List hNPCs; LCLs; H1299
Seq Type List m6A-seq
Transcript ID List ENST00000509263.5; ENST00000514671.5; ENST00000313899.12; ENST00000514325.1; ENST00000353341.8; ENST00000507010.5; ENST00000352301.8; ENST00000513584.1
External Link RMBase: m6A_site_642185
mod ID: M6ASITE066280 Click to Show/Hide the Full List
mod site chr4:82357415-82357416:- [7]
Sequence CATAGAGCTCCCCATGGACAACAAGACCAATAAGAGGCGTG
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000514671.5; ENST00000353341.8; ENST00000352301.8; ENST00000509263.5; ENST00000514325.1; ENST00000513584.1; ENST00000507010.5; ENST00000313899.12
External Link RMBase: m6A_site_642186
mod ID: M6ASITE066281 Click to Show/Hide the Full List
mod site chr4:82357418-82357419:- [7]
Sequence ATCCATAGAGCTCCCCATGGACAACAAGACCAATAAGAGGC
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T; hNPCs; LCLs; H1299
Seq Type List MAZTER-seq; m6A-seq
Transcript ID List ENST00000352301.8; ENST00000509263.5; ENST00000514671.5; ENST00000313899.12; ENST00000353341.8; ENST00000514325.1; ENST00000513584.1; ENST00000507010.5
External Link RMBase: m6A_site_642187
mod ID: M6ASITE066282 Click to Show/Hide the Full List
mod site chr4:82357509-82357510:- [9]
Sequence GTGTGTTTTCCCCCCTCTAAACTTGTGTTTCTTTTAAGGTC
Motif Score 2.627720238
Cell/Tissue List LCLs
Seq Type List m6A-seq
Transcript ID List ENST00000513584.1; ENST00000514325.1; ENST00000509263.5; ENST00000313899.12; ENST00000352301.8; ENST00000515432.1; ENST00000353341.8; ENST00000514671.5; ENST00000507010.5
External Link RMBase: m6A_site_642188
mod ID: M6ASITE066283 Click to Show/Hide the Full List
mod site chr4:82358702-82358703:- [7]
Sequence TTGGTGGCCTTTCTCCAGATACACCTGAAGAGAAAATAAGG
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000507010.5; ENST00000352301.8; ENST00000509263.5; ENST00000515432.1; ENST00000514325.1; ENST00000513584.1; ENST00000313899.12; ENST00000514671.5; ENST00000353341.8
External Link RMBase: m6A_site_642189
mod ID: M6ASITE066284 Click to Show/Hide the Full List
mod site chr4:82358750-82358751:- [5]
Sequence AAAGGGCCAAAGCCATGAAAACAAAAGAGCCGGTTAAAAAA
Motif Score 2.20572619
Cell/Tissue List HeLa; hESC-HEK293T; HepG2; Huh7
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000313899.12; ENST00000509263.5; ENST00000352301.8; ENST00000353341.8; ENST00000514325.1; ENST00000514671.5; ENST00000513584.1; ENST00000515432.1; ENST00000507010.5
External Link RMBase: m6A_site_642190
mod ID: M6ASITE066285 Click to Show/Hide the Full List
mod site chr4:82358802-82358803:- [5]
Sequence TAGGTCATGGATCAAAAAGAACATAAATTGAATGGGAAGGT
Motif Score 2.951386905
Cell/Tissue List HeLa; hESC-HEK293T; HepG2; Huh7
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000352301.8; ENST00000507010.5; ENST00000513584.1; ENST00000515432.1; ENST00000353341.8; ENST00000514671.5; ENST00000503822.1; ENST00000313899.12; ENST00000514325.1; ENST00000509263.5
External Link RMBase: m6A_site_642191
mod ID: M6ASITE066286 Click to Show/Hide the Full List
mod site chr4:82358835-82358836:- [5]
Sequence TATATATTTTTTAAATGAAAACTTCAATTTCCTTAGGTCAT
Motif Score 2.627720238
Cell/Tissue List HeLa; HepG2; U2OS; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000352301.8; ENST00000313899.12; ENST00000513584.1; ENST00000503822.1; ENST00000515432.1; ENST00000509263.5; ENST00000514671.5; ENST00000353341.8; ENST00000514325.1; ENST00000507010.5
External Link RMBase: m6A_site_642192
mod ID: M6ASITE066287 Click to Show/Hide the Full List
mod site chr4:82359550-82359551:- [4]
Sequence TTGGTGAAGTTGTAGACTGCACTCTGAAGTTAGATCCTATC
Motif Score 3.252583333
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000509263.5; ENST00000353341.8; ENST00000514671.5; ENST00000515432.1; ENST00000513584.1; ENST00000503822.1; ENST00000352301.8; ENST00000507010.5; ENST00000509107.1; ENST00000313899.12
External Link RMBase: m6A_site_642193
mod ID: M6ASITE066288 Click to Show/Hide the Full List
mod site chr4:82359555-82359556:- [5]
Sequence CAAATTTGGTGAAGTTGTAGACTGCACTCTGAAGTTAGATC
Motif Score 3.319380952
Cell/Tissue List HeLa; HEK293T; U2OS; Huh7
Seq Type List m6A-seq; DART-seq; MeRIP-seq
Transcript ID List ENST00000507010.5; ENST00000509107.1; ENST00000513584.1; ENST00000509263.5; ENST00000503822.1; ENST00000514671.5; ENST00000313899.12; ENST00000352301.8; ENST00000515432.1; ENST00000353341.8
External Link RMBase: m6A_site_642194
mod ID: M6ASITE066289 Click to Show/Hide the Full List
mod site chr4:82359585-82359586:- [5]
Sequence TACAAAGAAAGATCTGAAGGACTACTTTTCCAAATTTGGTG
Motif Score 4.065041667
Cell/Tissue List HeLa; U2OS; MT4; MM6; Huh7; AML
Seq Type List m6A-seq; MeRIP-seq; miCLIP
Transcript ID List ENST00000352301.8; ENST00000503822.1; ENST00000509107.1; ENST00000313899.12; ENST00000507010.5; ENST00000515432.1; ENST00000514671.5; ENST00000509263.5; ENST00000353341.8; ENST00000513584.1
External Link RMBase: m6A_site_642195
mod ID: M6ASITE066290 Click to Show/Hide the Full List
mod site chr4:82359604-82359605:- [7]
Sequence GAGGCCTTAGCTGGGACACTACAAAGAAAGATCTGAAGGAC
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000313899.12; ENST00000514671.5; ENST00000513584.1; ENST00000353341.8; ENST00000503822.1; ENST00000515432.1; ENST00000509107.1; ENST00000507010.5; ENST00000352301.8; ENST00000509263.5
External Link RMBase: m6A_site_642196
mod ID: M6ASITE066291 Click to Show/Hide the Full List
mod site chr4:82359609-82359610:- [5]
Sequence TATAGGAGGCCTTAGCTGGGACACTACAAAGAAAGATCTGA
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HEK293T; hESC-HEK293T; U2OS; MT4; A549; MM6; Huh7
Seq Type List m6A-seq; DART-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000503822.1; ENST00000513584.1; ENST00000515432.1; ENST00000507010.5; ENST00000353341.8; ENST00000514671.5; ENST00000509263.5; ENST00000313899.12; ENST00000352301.8; ENST00000509107.1
External Link RMBase: m6A_site_642197
mod ID: M6ASITE066292 Click to Show/Hide the Full List
mod site chr4:82367649-82367650:- [4]
Sequence GTTTAAGTATTGGGTCTTGCACTGTAAACTCCTGCTTATCT
Motif Score 3.252583333
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000507010.5; ENST00000353341.8; ENST00000515432.1; ENST00000503822.1; ENST00000513584.1; ENST00000313899.12; ENST00000509263.5; ENST00000509107.1; ENST00000352301.8
External Link RMBase: m6A_site_642198
mod ID: M6ASITE066293 Click to Show/Hide the Full List
mod site chr4:82371562-82371563:- [7]
Sequence CATTCAAACTCCTCCCCACGACACTCTGAAGCAGCGACGGC
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000313899.12; ENST00000509107.1; ENST00000509263.5; ENST00000503822.1; ENST00000352301.8; ENST00000353341.8; ENST00000513584.1; ENST00000515432.1; ENST00000507010.5
External Link RMBase: m6A_site_642199
mod ID: M6ASITE066294 Click to Show/Hide the Full List
mod site chr4:82371575-82371576:- [10]
Sequence TTAATTCCCTAGCCATTCAAACTCCTCCCCACGACACTCTG
Motif Score 2.627720238
Cell/Tissue List CD34; HepG2; U2OS; MT4; A549; H1299; MM6; Huh7; Jurkat; MSC; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000352301.8; ENST00000515432.1; ENST00000353341.8; ENST00000507010.5; ENST00000509107.1; ENST00000503822.1; ENST00000513584.1; ENST00000509263.5; ENST00000313899.12
External Link RMBase: m6A_site_642200
mod ID: M6ASITE066295 Click to Show/Hide the Full List
mod site chr4:82373527-82373528:- [5]
Sequence GAGCCGGGACCGGGGGCGGAACCGCGTCTGGAGGCACCGAA
Motif Score 2.930744048
Cell/Tissue List HeLa; CD34; HepG2; A549; U2OS; H1B; H1A; MT4; H1299; MM6; Huh7; Jurkat; CD4T; GSC-11; HEK293T; MSC; iSLK; TIME; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000509107.1; ENST00000353341.8; ENST00000507010.5; ENST00000313899.12; ENST00000352301.8; ENST00000503822.1; ENST00000513584.1; ENST00000515432.1
External Link RMBase: m6A_site_642201
mod ID: M6ASITE066296 Click to Show/Hide the Full List
mod site chr4:82373539-82373540:- [5]
Sequence CGGCGGGAAGCGGAGCCGGGACCGGGGGCGGAACCGCGTCT
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HepG2; A549; U2OS; H1B; H1A; MT4; H1299; MM6; Huh7; Jurkat; CD4T; GSC-11; HEK293T; MSC; iSLK; TIME; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000515432.1; ENST00000313899.12; ENST00000353341.8; ENST00000352301.8; ENST00000509107.1; ENST00000513584.1; ENST00000507010.5; ENST00000503822.1
External Link RMBase: m6A_site_642202
mod ID: M6ASITE066297 Click to Show/Hide the Full List
mod site chr4:82373578-82373579:- [7]
Sequence AGGGAGCCATGGTGGCGGCGACACAGGGGGCAGCGGCGGCG
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000503822.1; ENST00000353341.8; ENST00000509107.1; ENST00000515432.1; ENST00000513584.1; ENST00000352301.8; ENST00000313899.12; ENST00000507010.5
External Link RMBase: m6A_site_642203
mod ID: M6ASITE066298 Click to Show/Hide the Full List
mod site chr4:82373688-82373689:- [5]
Sequence TCTCGGCGGCAGCGGCGGAGACACTAGCACTATGTCGGAGG
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; A549; hESC-HEK293T; U2OS; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; MSC; iSLK; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000515432.1; ENST00000513584.1; ENST00000353341.8; ENST00000507010.5; ENST00000313899.12; ENST00000503822.1; ENST00000509107.1; ENST00000352301.8
External Link RMBase: m6A_site_642204