General Information of the Epigenetic Target (ID: EPITAR00248)
Target Name YTH domain-containing family protein 1 (YTHDF1)
Synonyms
DF1; Dermatomyositis associated with cancer putative autoantigen 1; DACA-1
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Gene Name YTHDF1
Sequence
MSATSVDTQRTKGQDNKVQNGSLHQKDTVHDNDFEPYLTGQSNQSNSYPSMSDPYLSSYYPPSIGFPYSLNEAPWSTAGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGNNIYQHRFNFFPENPAFSAWGTSGSQGQQTQSSAYGSSYTYPPSSLGGTVVDGQPGFHSDTLSKAPGMNSLEQGMVGLKIGDVSSSAVKTVGSVVSSVALTGVLSGNGGTNVNMPVSKPTSWAAIASKPAKPQPKMKTKSGPVMGGGLPPPPIKHNMDIGTWDNKGPVPKAPVPQQAPSPQAAPQPQQVAQPLPAQPPALAQPQYQSPQQPPQTRWVAPRNRNAAFGQSGGAGSDSNSPGNVQPNSAPSVESHPVLEKLKAAHSYNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQSRNKQ
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Family YTHDF family, YTHDF1 subfamily
Function
Specifically recognizes and binds N6-methyladenosine (m6A)-containing mRNAs, and regulates their stability (PubMed:24284625, PubMed:32492408, PubMed:26318451). M6A is a modification present at internal sites of mRNAs and some non-coding RNAs and plays a role in mRNA stability and processing (PubMed:24284625, PubMed:32492408). Acts as a regulator of mRNA stability by promoting degradation of m6A-containing mRNAs via interaction with the CCR4-NOT complex (PubMed:32492408). The YTHDF paralogs (YTHDF1, YTHDF2 and YTHDF3) shares m6A-containing mRNAs targets and act redundantly to mediate mRNA degradation and cellular differentiation (PubMed:28106072, PubMed:32492408). Required to facilitate learning and memory formation in the hippocampus by binding to m6A-containing neuronal mRNAs (By similarity). Acts as a regulator of axon guidance by binding to m6A-containing ROBO3 transcripts (By similarity). Acts as a negative regulator of antigen cross-presentation in myeloid dendritic cells (By similarity). In the context of tumorigenesis, negative regulation of antigen cross-presentation limits the anti-tumor response by reducing efficiency of tumor-antigen cross-presentation (By similarity). Promotes formation of phase-separated membraneless compartments, such as P-bodies or stress granules, by undergoing liquid-liquid phase separation upon binding to mRNAs containing multiple m6A-modified residues: polymethylated mRNAs act as a multivalent scaffold for the binding of YTHDF proteins, juxtaposing their disordered regions and thereby leading to phase separation (PubMed:31388144, PubMed:31292544, PubMed:32451507). The resulting mRNA-YTHDF complexes then partition into different endogenous phase-separated membraneless compartments, such as P-bodies, stress granules or neuronal RNA granules (PubMed:31292544).
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Gene ID 54915
HGNC ID HGNC:15867
Ensembl Gene ID ENSG00000149658
KEGG ID hsa:54915
Chromosomal Location 20q13.33
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00248)
YTH domain-containing family protein 1 (YTHDF1)
Adenosine-to-Inosine editing (A-to-I)
In total 2 m6A sequence/site(s) in this target gene
mod ID: A2ISITE010814 Click to Show/Hide the Full List
mod site chr20:63207115-63207116:- [1]
Sequence GCCCATGGAGCCGTGGCACTAAGGAATGTTGAGGGAGCAGC
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: RNA-editing_site_88720
mod ID: A2ISITE010815 Click to Show/Hide the Full List
mod site chr20:63212132-63212133:- [1]
Sequence TGGATAGAGGTAATGGCAGGAAGTTAACTAATTTTTTGAAT
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: RNA-editing_site_88721
5-methylcytidine (m5C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: M5CSITE002795 Click to Show/Hide the Full List
mod site chr20:63195613-63195614:- [2]
Sequence ATCCTTACCGTCCTAGAGAGCAGACGCTTTCTGAAAACTAC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m5C_site_29570
N6-methyladenosine (m6A)
In total 67 m6A sequence/site(s) in this target gene
mod ID: M6ASITE054376 Click to Show/Hide the Full List
mod site chr20:63195445-63195446:- [3]
Sequence GAGAATACAAGCCTTAATAAACAATACTATTTAGCAAACTT
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HEK293T; A549; HepG2; U2OS; GM12878; LCLs; Huh7; HEK293A-TOA; iSLK; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541056
mod ID: M6ASITE054377 Click to Show/Hide the Full List
mod site chr20:63195485-63195486:- [4]
Sequence CCTGAATGGAGTCCTGGACGACATTGGGTTTTTCCTCTAGG
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541057
mod ID: M6ASITE054378 Click to Show/Hide the Full List
mod site chr20:63195515-63195516:- [3]
Sequence GAGCGTGTCACTTCCTCTGAACTGTTACTGCCTGAATGGAG
Motif Score 3.373380952
Cell/Tissue List HeLa; CD34; HEK293T; A549; HepG2; U2OS; hESCs; fibroblasts; GM12878; LCLs; Huh7; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541058
mod ID: M6ASITE054379 Click to Show/Hide the Full List
mod site chr20:63195526-63195527:- [5]
Sequence ACTTGTATTTAGAGCGTGTCACTTCCTCTGAACTGTTACTG
Motif Score 2.469291667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541059
mod ID: M6ASITE054380 Click to Show/Hide the Full List
mod site chr20:63195546-63195547:- [3]
Sequence CGTTTCAGCTGTATCATTAGACTTGTATTTAGAGCGTGTCA
Motif Score 3.319380952
Cell/Tissue List HeLa; CD34; HEK293T; A549; HepG2; U2OS; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541060
mod ID: M6ASITE054381 Click to Show/Hide the Full List
mod site chr20:63195567-63195568:- [5]
Sequence CCAAAAGACCCTCTGAGTTAACGTTTCAGCTGTATCATTAG
Motif Score 2.142029762
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541061
mod ID: M6ASITE054382 Click to Show/Hide the Full List
mod site chr20:63195580-63195581:- [3]
Sequence AAAACTACTTGCTCCAAAAGACCCTCTGAGTTAACGTTTCA
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HEK293T; A549; HepG2; U2OS; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541062
mod ID: M6ASITE054383 Click to Show/Hide the Full List
mod site chr20:63195597-63195598:- [3]
Sequence AGAGCAGACGCTTTCTGAAAACTACTTGCTCCAAAAGACCC
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HEK293T; A549; HepG2; U2OS; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541063
mod ID: M6ASITE054384 Click to Show/Hide the Full List
mod site chr20:63195733-63195734:- [3]
Sequence CATGTTTTGTGGAATGAGGGACCGTTGAGCTCACTACCACC
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; U2OS; GM12878
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541064
mod ID: M6ASITE054385 Click to Show/Hide the Full List
mod site chr20:63195780-63195781:- [3]
Sequence ATGGGTAAAAACAAAACAAAACTTTTTTTAGAAGATGAATT
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541065
mod ID: M6ASITE054386 Click to Show/Hide the Full List
mod site chr20:63195785-63195786:- [3]
Sequence GTTGAATGGGTAAAAACAAAACAAAACTTTTTTTAGAAGAT
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq; DART-seq; MeRIP-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541066
mod ID: M6ASITE054387 Click to Show/Hide the Full List
mod site chr20:63195790-63195791:- [3]
Sequence TTCCTGTTGAATGGGTAAAAACAAAACAAAACTTTTTTTAG
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; hESC-HEK293T
Seq Type List m6A-seq; DART-seq; MAZTER-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541067
mod ID: M6ASITE054388 Click to Show/Hide the Full List
mod site chr20:63195867-63195868:- [3]
Sequence TGTAGGATCTGGTAGTACAGACAGTGTGATGGATGATGCTG
Motif Score 2.897386905
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq; DART-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541068
mod ID: M6ASITE054389 Click to Show/Hide the Full List
mod site chr20:63195951-63195952:- [5]
Sequence TGCACATCTTTTTAAATTTTACACCTTTTCTTAAGAATTCT
Motif Score 2.07285119
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541069
mod ID: M6ASITE054390 Click to Show/Hide the Full List
mod site chr20:63195968-63195969:- [5]
Sequence GGGCATTCTTTGTTGTTTGCACATCTTTTTAAATTTTACAC
Motif Score 2.830589286
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541070
mod ID: M6ASITE054391 Click to Show/Hide the Full List
mod site chr20:63196020-63196021:- [5]
Sequence GGGGCATGATGTGTGGAGGAACTGGAAGGTGCTTTAGGTCT
Motif Score 3.373380952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541071
mod ID: M6ASITE054392 Click to Show/Hide the Full List
mod site chr20:63196176-63196177:- [5]
Sequence CCATTTGATTTTTCTGCTAGACAGATAACTTTTAATTTTTC
Motif Score 2.897386905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541072
mod ID: M6ASITE054393 Click to Show/Hide the Full List
mod site chr20:63196198-63196199:- [5]
Sequence TCGGTCTAAAGTGCTAATTTACCCATTTGATTTTTCTGCTA
Motif Score 2.052208333
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541073
mod ID: M6ASITE054394 Click to Show/Hide the Full List
mod site chr20:63196339-63196340:- [4]
Sequence CCTTTATTGCTTTTTAGCAAACATAAGAAACCATGAGTCAT
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370339.8
External Link RMBase: m6A_site_541074
mod ID: M6ASITE054395 Click to Show/Hide the Full List
mod site chr20:63196376-63196377:- [3]
Sequence GTCATTTGATATTCTGTGAGACTTCATATTTCTCATCCCTT
Motif Score 3.319380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541075
mod ID: M6ASITE054396 Click to Show/Hide the Full List
mod site chr20:63196437-63196438:- [3]
Sequence AAATGTAAGTATCCTTAAAAACAAAGCATCTATTTTGGCAG
Motif Score 2.20572619
Cell/Tissue List HeLa; hESC-HEK293T
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541076
mod ID: M6ASITE054397 Click to Show/Hide the Full List
mod site chr20:63196471-63196472:- [3]
Sequence TTTGTCAGCTTATCAATCAGACTGATCTAATGTGAAATGTA
Motif Score 3.319380952
Cell/Tissue List HeLa; HepG2
Seq Type List m6A-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541077
mod ID: M6ASITE054398 Click to Show/Hide the Full List
mod site chr20:63196511-63196512:- [5]
Sequence ATTATAATCCTGTAGAAGTCACTAATAAAGGAGTATTTTTT
Motif Score 2.469291667
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541078
mod ID: M6ASITE054399 Click to Show/Hide the Full List
mod site chr20:63196544-63196545:- [5]
Sequence ATGGATCTGCATTTATTTGTACTTTTTCTATGTATTATAAT
Motif Score 3.278136905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541079
mod ID: M6ASITE054400 Click to Show/Hide the Full List
mod site chr20:63196653-63196654:- [3]
Sequence GACTTTGAAAACAGTTTAAAACACGTGTGCTTGGTCAGCTC
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; GM12878; H1299; MM6; Huh7; Jurkat; peripheral-blood; iSLK
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541080
mod ID: M6ASITE054401 Click to Show/Hide the Full List
mod site chr20:63196663-63196664:- [3]
Sequence TCTAACGTTTGACTTTGAAAACAGTTTAAAACACGTGTGCT
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; GM12878; H1299; MM6; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541081
mod ID: M6ASITE054402 Click to Show/Hide the Full List
mod site chr20:63196672-63196673:- [6]
Sequence CTTACATGTTCTAACGTTTGACTTTGAAAACAGTTTAAAAC
Motif Score 3.28175
Cell/Tissue List A549; AML
Seq Type List m6A-CLIP/IP; miCLIP
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541082
mod ID: M6ASITE054403 Click to Show/Hide the Full List
mod site chr20:63196689-63196690:- [5]
Sequence TGAGGGCGAACCAGTTTCTTACATGTTCTAACGTTTGACTT
Motif Score 2.07285119
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541083
mod ID: M6ASITE054404 Click to Show/Hide the Full List
mod site chr20:63196700-63196701:- [3]
Sequence GAAACAAACAATGAGGGCGAACCAGTTTCTTACATGTTCTA
Motif Score 2.930744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541084
mod ID: M6ASITE054405 Click to Show/Hide the Full List
mod site chr20:63196713-63196714:- [7]
Sequence GAACGGCAGAGTCGAAACAAACAATGAGGGCGAACCAGTTT
Motif Score 2.20572619
Cell/Tissue List CD34; Jurkat
Seq Type List m6A-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541085
mod ID: M6ASITE054406 Click to Show/Hide the Full List
mod site chr20:63196717-63196718:- [3]
Sequence ACAGGAACGGCAGAGTCGAAACAAACAATGAGGGCGAACCA
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541086
mod ID: M6ASITE054407 Click to Show/Hide the Full List
mod site chr20:63202356-63202357:- [4]
Sequence AATTATCAGTTCCTACAAGCACACAACCTCCATCTTCGACG
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541087
mod ID: M6ASITE054408 Click to Show/Hide the Full List
mod site chr20:63202362-63202363:- [8]
Sequence GCTGAAAATTATCAGTTCCTACAAGCACACAACCTCCATCT
Motif Score 2.078666667
Cell/Tissue List kidney; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541088
mod ID: M6ASITE054409 Click to Show/Hide the Full List
mod site chr20:63202419-63202420:- [3]
Sequence ACCGGTCACAAACTCCCGGGACACCCAGGAGGTGCCCTTAG
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541089
mod ID: M6ASITE054410 Click to Show/Hide the Full List
mod site chr20:63202428-63202429:- [3]
Sequence CGACAACAAACCGGTCACAAACTCCCGGGACACCCAGGAGG
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541090
mod ID: M6ASITE054411 Click to Show/Hide the Full List
mod site chr20:63202439-63202440:- [3]
Sequence CTGGAGAATAACGACAACAAACCGGTCACAAACTCCCGGGA
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541091
mod ID: M6ASITE054412 Click to Show/Hide the Full List
mod site chr20:63202443-63202444:- [4]
Sequence CAGGCTGGAGAATAACGACAACAAACCGGTCACAAACTCCC
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541092
mod ID: M6ASITE054413 Click to Show/Hide the Full List
mod site chr20:63202446-63202447:- [4]
Sequence CATCAGGCTGGAGAATAACGACAACAAACCGGTCACAAACT
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541093
mod ID: M6ASITE054414 Click to Show/Hide the Full List
mod site chr20:63202449-63202450:- [6]
Sequence GCACATCAGGCTGGAGAATAACGACAACAAACCGGTCACAA
Motif Score 2.142029762
Cell/Tissue List CD8T
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541094
mod ID: M6ASITE054415 Click to Show/Hide the Full List
mod site chr20:63202536-63202537:- [3]
Sequence TGCCGGGGTCTGGTCTCAGGACAAGTGGAAGGGGAAGTTTG
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; kidney; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-REF-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541095
mod ID: M6ASITE054416 Click to Show/Hide the Full List
mod site chr20:63202569-63202570:- [3]
Sequence CGAGATGAAGTCCCCCGTGGACTACGGCACCAGTGCCGGGG
Motif Score 4.065041667
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4; AML
Seq Type List m6A-seq; MeRIP-seq; miCLIP
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541096
mod ID: M6ASITE054417 Click to Show/Hide the Full List
mod site chr20:63202674-63202675:- [3]
Sequence GCACGGCAACAAGCGCCTGGACAGCGCCTTCCGCTGCATGA
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541097
mod ID: M6ASITE054418 Click to Show/Hide the Full List
mod site chr20:63202737-63202738:- [4]
Sequence CAAGAGCTACTCTGAGGACGACATCCACCGCTCCATTAAGT
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541098
mod ID: M6ASITE054419 Click to Show/Hide the Full List
mod site chr20:63202740-63202741:- [6]
Sequence CATCAAGAGCTACTCTGAGGACGACATCCACCGCTCCATTA
Motif Score 3.616982143
Cell/Tissue List CD8T; A549
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541099
mod ID: M6ASITE054420 Click to Show/Hide the Full List
mod site chr20:63202809-63202810:- [4]
Sequence ACTGAAGGCTGCTCACAGCTACAACCCGAAAGAGTTTGAGT
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541100
mod ID: M6ASITE054421 Click to Show/Hide the Full List
mod site chr20:63202829-63202830:- [3]
Sequence TCCCACCCCGTCCTTGAAAAACTGAAGGCTGCTCACAGCTA
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541101
mod ID: M6ASITE054422 Click to Show/Hide the Full List
mod site chr20:63202963-63202964:- [3]
Sequence GCCCTCAGCAGCCACCCCAGACCCGCTGGGTTGCCCCACGC
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541102
mod ID: M6ASITE054423 Click to Show/Hide the Full List
mod site chr20:63203130-63203131:- [3]
Sequence ACCCATAAAGCATAACATGGACATTGGCACCTGGGATAACA
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541103
mod ID: M6ASITE054424 Click to Show/Hide the Full List
mod site chr20:63203136-63203137:- [4]
Sequence CCCTCCACCCATAAAGCATAACATGGACATTGGCACCTGGG
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541104
mod ID: M6ASITE054425 Click to Show/Hide the Full List
mod site chr20:63203191-63203192:- [3]
Sequence AACCACAGCCTAAAATGAAAACAAAGAGCGGGCCTGTCATG
Motif Score 2.20572619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541105
mod ID: M6ASITE054426 Click to Show/Hide the Full List
mod site chr20:63203210-63203211:- [3]
Sequence ATTGCCAGCAAGCCTGCAAAACCACAGCCTAAAATGAAAAC
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541106
mod ID: M6ASITE054427 Click to Show/Hide the Full List
mod site chr20:63203265-63203266:- [3]
Sequence CAACGGTGGGACAAATGTGAACATGCCAGTTTCAAAGCCGA
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541107
mod ID: M6ASITE054428 Click to Show/Hide the Full List
mod site chr20:63203275-63203276:- [3]
Sequence TCCTTTCTGGCAACGGTGGGACAAATGTGAACATGCCAGTT
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541108
mod ID: M6ASITE054429 Click to Show/Hide the Full List
mod site chr20:63203283-63203284:- [6]
Sequence GACTGGTGTCCTTTCTGGCAACGGTGGGACAAATGTGAACA
Motif Score 2.147845238
Cell/Tissue List A549
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541109
mod ID: M6ASITE054430 Click to Show/Hide the Full List
mod site chr20:63203397-63203398:- [3]
Sequence CAGCAAGGCCCCCGGGATGAACAGCCTGGAGCAGGGCATGG
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hESCs; fibroblasts; GM12878; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541110
mod ID: M6ASITE054431 Click to Show/Hide the Full List
mod site chr20:63203487-63203488:- [4]
Sequence CTCCGCGTATGGGAGCAGCTACACCTACCCCCCGAGCTCCC
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541111
mod ID: M6ASITE054432 Click to Show/Hide the Full List
mod site chr20:63203515-63203516:- [3]
Sequence GTGGGTCTCAAGGTCAGCAGACCCAGAGCTCCGCGTATGGG
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HEK293T; A549; HepG2; U2OS; GM12878; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541112
mod ID: M6ASITE054433 Click to Show/Hide the Full List
mod site chr20:63203539-63203540:- [3]
Sequence CTGCGTTCTCAGCATGGGGGACAAGTGGGTCTCAAGGTCAG
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HEK293T; A549; hESC-HEK293T; HepG2; U2OS; GM12878; H1299; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541113
mod ID: M6ASITE054434 Click to Show/Hide the Full List
mod site chr20:63203562-63203563:- [3]
Sequence GTTCAATTTTTTCCCTGAAAACCCTGCGTTCTCAGCATGGG
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HEK293T; A549; HepG2; U2OS; GM12878; LCLs; H1299; Huh7; Jurkat; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541114
mod ID: M6ASITE054435 Click to Show/Hide the Full List
mod site chr20:63203601-63203602:- [3]
Sequence GCAGCCTGGGGGCCTGGGGAACAACATCTATCAGCACAGGT
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; HEK293T; A549; hESC-HEK293T; HepG2; U2OS; hESCs; fibroblasts; GM12878; LCLs; H1299; Huh7; Jurkat; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541115
mod ID: M6ASITE054436 Click to Show/Hide the Full List
mod site chr20:63203652-63203653:- [3]
Sequence CGGACAGCTCAGTAACGGAGACCATCATTTTATGCACGATG
Motif Score 2.876744048
Cell/Tissue List HeLa; CD34; HEK293T; A549; HepG2; U2OS; hESCs; fibroblasts; GM12878; LCLs; H1299; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541116
mod ID: M6ASITE054437 Click to Show/Hide the Full List
mod site chr20:63203669-63203670:- [3]
Sequence CCATACCTCACCACCTACGGACAGCTCAGTAACGGAGACCA
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HEK293T; brain; A549; hESC-HEK293T; HepG2; U2OS; hESCs; fibroblasts; GM12878; LCLs; H1299; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq; m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541117
mod ID: M6ASITE054438 Click to Show/Hide the Full List
mod site chr20:63203700-63203701:- [3]
Sequence TCCGTGGTCTACTGCAGGGGACCCTCCGATTCCATACCTCA
Motif Score 3.622404762
Cell/Tissue List HeLa; CD34; HEK293T; A549; HepG2; U2OS; hESCs; GM12878; LCLs; H1299; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541118
mod ID: M6ASITE054439 Click to Show/Hide the Full List
mod site chr20:63213875-63213876:- [3]
Sequence TTTGAGCCCTACCTTACTGGACAGTCAAATCAGGTGAGTTT
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; HEK293T; U2OS; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541119
mod ID: M6ASITE054440 Click to Show/Hide the Full List
mod site chr20:63215589-63215590:- [3]
Sequence GCGGTGCAGAGAACAAAAGGACAAGATAATAAAGGTGAGCG
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; U2OS
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541120
mod ID: M6ASITE054441 Click to Show/Hide the Full List
mod site chr20:63215597-63215598:- [3]
Sequence GGCCTGCGGCGGTGCAGAGAACAAAAGGACAAGATAATAAA
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; U2OS
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370339.8; ENST00000370334.4
External Link RMBase: m6A_site_541121
mod ID: M6ASITE054442 Click to Show/Hide the Full List
mod site chr20:63215872-63215873:- [3]
Sequence CATGTCGGCCACCAGCGTGGACACCCAGGTAGCGGGGCCGG
Motif Score 3.643047619
Cell/Tissue List HeLa; CD34; U2OS
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000370334.4; ENST00000370339.8
External Link RMBase: m6A_site_541122