Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00246)

Target Name	Smad nuclear interacting protein 1 (SNIP1)
Synonyms	PML1 Click to Show/Hide
Gene Name	SNIP1
Sequence	MKAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHRRPDHSGGSPSPPTSEPARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVKQEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDRDTQNLQAQEEEREFYNARRREHRQRNDVGGGGSESQELVPRPGGNNKEKEVPAKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESSDTSEIDRKDDEDEEEEEEVSDS Click to Show/Hide
Function	Required for pre-mRNA splicing as component of the spliceosome (PubMed:29360106). As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs (Probable). Down-regulates NF-kappa-B signaling by competing with RELA for CREBBP/EP300 binding. Involved in the microRNA (miRNA) biogenesis. May be involved in cyclin-D1/CCND1 mRNA stability through the SNARP complex which associates with both the 3'end of the CCND1 gene and its mRNA. Click to Show/Hide
Gene ID	79753
HGNC ID	HGNC:30587
Ensembl Gene ID	ENSG00000163877
KEGG ID	hsa:79753
Chromosomal Location	1p34.3

RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00246)

Smad nuclear interacting protein 1 (SNIP1)

Adenosine-to-Inosine editing (A-to-I)

In total 1 m6A sequence/site(s) in this target gene
mod ID: A2ISITE006724		Click to Show/Hide the Full List
mod site	chr1:37549591-37549592:-		[1]
Sequence	TGGTGAAACCCATCTGTACAAAAAATACAAAAATTAGTTGG
Transcript ID List	rmsk_86920; ENST00000296215.8; ENST00000468040.2
External Link	RMBase: RNA-editing_site_4164

N6-methyladenosine (m6A)

In total 46 m6A sequence/site(s) in this target gene
mod ID: M6ASITE017511		Click to Show/Hide the Full List
mod site	chr1:37536501-37536502:-		[2]
Sequence	ATGCTTTCCTAGCGTAGAGGACCTTGTGTTCATAGGTCTGT
Motif Score	3.622404762
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000296215.8
External Link	RMBase: m6A_site_22944
mod ID: M6ASITE017512		Click to Show/Hide the Full List
mod site	chr1:37536629-37536630:-		[3]
Sequence	CTGATACTGATTTTCATATGACAATGTTAGGCAAAGGCCTC
Motif Score	2.859755952
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000296215.8
External Link	RMBase: m6A_site_22945
mod ID: M6ASITE017513		Click to Show/Hide the Full List
mod site	chr1:37537064-37537065:-		[4]
Sequence	GTGGGTGCTGATTCAGCATCACAAGTGACTGAAATTGGCTG
Motif Score	2.047297619
Cell/Tissue List	kidney
Seq Type List	m6A-REF-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22946
mod ID: M6ASITE017514		Click to Show/Hide the Full List
mod site	chr1:37537146-37537147:-		[5]
Sequence	TTATTGACTGTTTAACTTAAACAGATGCTTTATGGCACCTG
Motif Score	2.20572619
Cell/Tissue List	HEK293T; HepG2
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22947
mod ID: M6ASITE017515		Click to Show/Hide the Full List
mod site	chr1:37537169-37537170:-		[5]
Sequence	GAATGTACTGCAGTCAGTAAACATTATTGACTGTTTAACTT
Motif Score	2.20572619
Cell/Tissue List	HEK293T; HepG2
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	ENST00000296215.8; ENST00000638725.1
External Link	RMBase: m6A_site_22948
mod ID: M6ASITE017516		Click to Show/Hide the Full List
mod site	chr1:37537298-37537299:-		[3]
Sequence	ACCCCTGAGCAGAGAATCTTACTAGGCTTTGGTTATCACCA
Motif Score	2.494845238
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22949
mod ID: M6ASITE017517		Click to Show/Hide the Full List
mod site	chr1:37537419-37537420:-		[6]
Sequence	TGCTGCCTAGGAAACTATAAACCCTTGGTTAAGGGGAAATC
Motif Score	2.185083333
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000296215.8; ENST00000638725.1
External Link	RMBase: m6A_site_22950
mod ID: M6ASITE017518		Click to Show/Hide the Full List
mod site	chr1:37537426-37537427:-		[6]
Sequence	TCAGAACTGCTGCCTAGGAAACTATAAACCCTTGGTTAAGG
Motif Score	2.627720238
Cell/Tissue List	HeLa
Seq Type List	m6A-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22951
mod ID: M6ASITE017519		Click to Show/Hide the Full List
mod site	chr1:37537509-37537510:-		[6]
Sequence	TGCAGGCATTTGTTTTCAGAACAGTCTCACCAATTACAACA
Motif Score	2.951386905
Cell/Tissue List	HeLa; HEK293T; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22952
mod ID: M6ASITE017520		Click to Show/Hide the Full List
mod site	chr1:37537559-37537560:-		[6]
Sequence	CACTGACTAATGTTTGTTAAACTTTTTCTGTGGCACCTTGG
Motif Score	2.627720238
Cell/Tissue List	HeLa; HEK293T; GM12878; Huh7; iSLK; TIME
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22953
mod ID: M6ASITE017521		Click to Show/Hide the Full List
mod site	chr1:37537574-37537575:-		[3]
Sequence	GTTACCATTTGAATACACTGACTAATGTTTGTTAAACTTTT
Motif Score	3.28175
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000296215.8; ENST00000638725.1
External Link	RMBase: m6A_site_22954
mod ID: M6ASITE017522		Click to Show/Hide the Full List
mod site	chr1:37537730-37537731:-		[6]
Sequence	CTAGCAAACTAAGAACCCAAACTATTGATACACGGTTTCCT
Motif Score	2.627720238
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1B; H1A; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22955
mod ID: M6ASITE017523		Click to Show/Hide the Full List
mod site	chr1:37537736-37537737:-		[6]
Sequence	TGACAGCTAGCAAACTAAGAACCCAAACTATTGATACACGG
Motif Score	2.930744048
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1B; H1A; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22956
mod ID: M6ASITE017524		Click to Show/Hide the Full List
mod site	chr1:37537743-37537744:-		[6]
Sequence	AAGTGTCTGACAGCTAGCAAACTAAGAACCCAAACTATTGA
Motif Score	2.627720238
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1B; H1A; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000296215.8; ENST00000638725.1
External Link	RMBase: m6A_site_22957
mod ID: M6ASITE017525		Click to Show/Hide the Full List
mod site	chr1:37537754-37537755:-		[7]
Sequence	GGAGGAGGAAGAAGTGTCTGACAGCTAGCAAACTAAGAACC
Motif Score	2.859755952
Cell/Tissue List	CD8T
Seq Type List	m6A-CLIP/IP
Transcript ID List	ENST00000296215.8; ENST00000638725.1
External Link	RMBase: m6A_site_22958
mod ID: M6ASITE017526		Click to Show/Hide the Full List
mod site	chr1:37537799-37537800:-		[6]
Sequence	GTCGGACACTTCTGAAATAGACAGGAAAGATGACGAGGATG
Motif Score	2.897386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1B; H1A; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22959
mod ID: M6ASITE017527		Click to Show/Hide the Full List
mod site	chr1:37537814-37537815:-		[6]
Sequence	CTTGCTCCATGAGTCGTCGGACACTTCTGAAATAGACAGGA
Motif Score	3.643047619
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; liver; A549; U2OS; H1B; H1A; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq; m6A-REF-seq; m6A-CLIP/IP
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22960
mod ID: M6ASITE017528		Click to Show/Hide the Full List
mod site	chr1:37537885-37537886:-		[6]
Sequence	GAGCCACAGAGATACTATGAACTAAAAGAAAAGGATGTACT
Motif Score	3.373380952
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; HEC-1-A; GSCs; AML
Seq Type List	m6A-seq; MeRIP-seq; m6A-CLIP/IP; miCLIP
Transcript ID List	ENST00000296215.8; ENST00000638725.1
External Link	RMBase: m6A_site_22961
mod ID: M6ASITE017529		Click to Show/Hide the Full List
mod site	chr1:37537919-37537920:-		[6]
Sequence	AGGCAATGGAACCTTCTTAAACAACAAACGTATTGAGCCAC
Motif Score	2.20572619
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; hNPCs; hESCs; fibroblasts; GM12878; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22962
mod ID: M6ASITE017530		Click to Show/Hide the Full List
mod site	chr1:37537929-37537930:-		[6]
Sequence	ACCTTGGCTCAGGCAATGGAACCTTCTTAAACAACAAACGT
Motif Score	2.930744048
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; hNPCs; hESCs; fibroblasts; GM12878; CD8T; MM6; Huh7; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List	ENST00000296215.8; ENST00000638725.1
External Link	RMBase: m6A_site_22963
mod ID: M6ASITE017531		Click to Show/Hide the Full List
mod site	chr1:37540210-37540211:-		[6]
Sequence	TCGACACCGCCGCATTGCAGACATTCCAATTGATCACCCGT
Motif Score	2.897386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; GM12878; Huh7; HEK293A-TOA; iSLK; TIME
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000468040.2; ENST00000296215.8; ENST00000638725.1
External Link	RMBase: m6A_site_22964
mod ID: M6ASITE017532		Click to Show/Hide the Full List
mod site	chr1:37540378-37540379:-		[6]
Sequence	TTCTGGGGCACTTCTTGAGGACACCAACACTTTCCGGGGTG
Motif Score	3.643047619
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List	ENST00000638725.1; ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22965
mod ID: M6ASITE017533		Click to Show/Hide the Full List
mod site	chr1:37540401-37540402:-		[6]
Sequence	AAAGAAAAACCAAGCTTTGAACTTTCTGGGGCACTTCTTGA
Motif Score	3.373380952
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List	ENST00000468040.2; ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22966
mod ID: M6ASITE017534		Click to Show/Hide the Full List
mod site	chr1:37540413-37540414:-		[6]
Sequence	GAGGTGCCCGCTAAAGAAAAACCAAGCTTTGAACTTTCTGG
Motif Score	2.185083333
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000638725.1; ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22967
mod ID: M6ASITE017535		Click to Show/Hide the Full List
mod site	chr1:37540570-37540571:-		[6]
Sequence	ACGGGATCGAGACACTCAGAACCTGCAGGCTCAGGAAGAAG
Motif Score	2.930744048
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000638725.1; ENST00000296215.8; ENST00000468040.2
External Link	RMBase: m6A_site_22968
mod ID: M6ASITE017536		Click to Show/Hide the Full List
mod site	chr1:37540579-37540580:-		[6]
Sequence	GGGTCAGGGACGGGATCGAGACACTCAGAACCTGCAGGCTC
Motif Score	2.897386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List	ENST00000468040.2; ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22969
mod ID: M6ASITE017537		Click to Show/Hide the Full List
mod site	chr1:37540590-37540591:-		[7]
Sequence	GGGAGTGGGCAGGGTCAGGGACGGGATCGAGACACTCAGAA
Motif Score	3.616982143
Cell/Tissue List	A549
Seq Type List	m6A-CLIP/IP
Transcript ID List	ENST00000638725.1; ENST00000296215.8; ENST00000468040.2
External Link	RMBase: m6A_site_22970
mod ID: M6ASITE017538		Click to Show/Hide the Full List
mod site	chr1:37540621-37540622:-		[7]
Sequence	CCACCAAAGGAGAACGTCTAACGAGAGGCCTGGGAGTGGGC
Motif Score	2.142029762
Cell/Tissue List	CD8T
Seq Type List	m6A-CLIP/IP
Transcript ID List	ENST00000468040.2; ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22971
mod ID: M6ASITE017539		Click to Show/Hide the Full List
mod site	chr1:37540656-37540657:-		[3]
Sequence	AGGAACAGTGACCGGGACAGACACCGGGGCCATTCCCACCA
Motif Score	2.897386905
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000638725.1; ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22972
mod ID: M6ASITE017540		Click to Show/Hide the Full List
mod site	chr1:37540660-37540661:-		[6]
Sequence	AGCTAGGAACAGTGACCGGGACAGACACCGGGGCCATTCCC
Motif Score	3.643047619
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List	ENST00000638725.1; ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22973
mod ID: M6ASITE017541		Click to Show/Hide the Full List
mod site	chr1:37540666-37540667:-		[7]
Sequence	CAGGAGAGCTAGGAACAGTGACCGGGACAGACACCGGGGCC
Motif Score	2.839113095
Cell/Tissue List	CD8T
Seq Type List	m6A-CLIP/IP
Transcript ID List	ENST00000296215.8; ENST00000468040.2; ENST00000638725.1
External Link	RMBase: m6A_site_22974
mod ID: M6ASITE017542		Click to Show/Hide the Full List
mod site	chr1:37540672-37540673:-		[6]
Sequence	GGAACACAGGAGAGCTAGGAACAGTGACCGGGACAGACACC
Motif Score	2.951386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000468040.2; ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22975
mod ID: M6ASITE017543		Click to Show/Hide the Full List
mod site	chr1:37540689-37540690:-		[6]
Sequence	AGGGAACCATCAGAACAGGAACACAGGAGAGCTAGGAACAG
Motif Score	2.951386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List	ENST00000468040.2; ENST00000296215.8; ENST00000638725.1
External Link	RMBase: m6A_site_22976
mod ID: M6ASITE017544		Click to Show/Hide the Full List
mod site	chr1:37540695-37540696:-		[6]
Sequence	CAGCACAGGGAACCATCAGAACAGGAACACAGGAGAGCTAG
Motif Score	2.951386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000638725.1; ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22977
mod ID: M6ASITE017545		Click to Show/Hide the Full List
mod site	chr1:37540704-37540705:-		[6]
Sequence	GAGGATCGGCAGCACAGGGAACCATCAGAACAGGAACACAG
Motif Score	2.930744048
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000296215.8; ENST00000638725.1; ENST00000468040.2
External Link	RMBase: m6A_site_22978
mod ID: M6ASITE017546		Click to Show/Hide the Full List
mod site	chr1:37540819-37540820:-		[6]
Sequence	ATGCACTTCGTTCAAAAAGAACAAGATTTGGGCTGCCTTTA
Motif Score	2.951386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; H1A; MT4; A549; Huh7; Jurkat; HEC-1-A
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000468040.2; ENST00000638725.1; ENST00000296215.8
External Link	RMBase: m6A_site_22979
mod ID: M6ASITE017547		Click to Show/Hide the Full List
mod site	chr1:37540848-37540849:-		[6]
Sequence	GCCAAAGTCCAAATTACAAGACTTTTTGCATGCACTTCGTT
Motif Score	3.319380952
Cell/Tissue List	HeLa; CD34
Seq Type List	m6A-seq
Transcript ID List	ENST00000296215.8; ENST00000468040.2; ENST00000638725.1
External Link	RMBase: m6A_site_22980
mod ID: M6ASITE017548		Click to Show/Hide the Full List
mod site	chr1:37548917-37548918:-		[8]
Sequence	AAAAGAAAGAGGTTTAATGGACTTACAGTTCCACATGGCTG
Motif Score	4.065041667
Cell/Tissue List	CD34
Seq Type List	m6A-seq
Transcript ID List	ENST00000296215.8; ENST00000468040.2
External Link	RMBase: m6A_site_22983
mod ID: M6ASITE017549		Click to Show/Hide the Full List
mod site	chr1:37548951-37548952:-		[8]
Sequence	TTGATAAAGACATACCCGAGACCCGGCGATTTACAAAAGAA
Motif Score	2.876744048
Cell/Tissue List	CD34
Seq Type List	m6A-seq
Transcript ID List	ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22984
mod ID: M6ASITE017550		Click to Show/Hide the Full List
mod site	chr1:37548962-37548963:-		[8]
Sequence	TTTTCATGCTGTTGATAAAGACATACCCGAGACCCGGCGAT
Motif Score	2.897386905
Cell/Tissue List	CD34
Seq Type List	m6A-seq
Transcript ID List	ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22985
mod ID: M6ASITE017551		Click to Show/Hide the Full List
mod site	chr1:37552491-37552492:-		[8]
Sequence	TCCGATGGGCTTTTCTGAAAACTGGCTGTATTTATTTTTTC
Motif Score	2.627720238
Cell/Tissue List	CD34
Seq Type List	m6A-seq
Transcript ID List	ENST00000493916.1; ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22986
mod ID: M6ASITE017552		Click to Show/Hide the Full List
mod site	chr1:37552681-37552682:-		[6]
Sequence	GTCTCCTCGCAGTAAGAGAAACCGAAGTCCTCACCACTCAA
Motif Score	2.185083333
Cell/Tissue List	HeLa; CD34; HepG2; A549; U2OS; MT4; Jurkat; CD4T; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs; NB4; MM6
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000296215.8; ENST00000493916.1; ENST00000468040.2
External Link	RMBase: m6A_site_22987
mod ID: M6ASITE017553		Click to Show/Hide the Full List
mod site	chr1:37552726-37552727:-		[6]
Sequence	GTCCCCACCCAAAAAGAAAAACAAGGCCTCAGGGAGAAGAA
Motif Score	2.20572619
Cell/Tissue List	HeLa; CD34; HepG2; A549; U2OS; MT4; MM6; Jurkat; CD4T; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000493916.1; ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22988
mod ID: M6ASITE017554		Click to Show/Hide the Full List
mod site	chr1:37554026-37554027:-		[6]
Sequence	CCGCTCGGGCCACCGCGGGAACCGAGCCCGAGGAGTTAGCC
Motif Score	2.930744048
Cell/Tissue List	HeLa; CD34; HepG2; A549; U2OS; MT4; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000493916.1; ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22989
mod ID: M6ASITE017555		Click to Show/Hide the Full List
mod site	chr1:37554089-37554090:-		[6]
Sequence	TCCCGCCCACCGCCGTCCGGACCACTCCGGTGGTAGCCCGT
Motif Score	3.622404762
Cell/Tissue List	HeLa; CD34; HepG2; A549; U2OS; H1B; MT4; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000493916.1; ENST00000468040.2; ENST00000296215.8
External Link	RMBase: m6A_site_22990
mod ID: M6ASITE017556		Click to Show/Hide the Full List
mod site	chr1:37554184-37554185:-		[6]
Sequence	GAGCGAGGGAGCCGGCGAAGACACCGGGACGGGGACGTGGT
Motif Score	2.897386905
Cell/Tissue List	HeLa; HepG2; A549; HEK293T; U2OS; H1A; H1B; MT4; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000493916.1; ENST00000296215.8; ENST00000468040.2
External Link	RMBase: m6A_site_22991

Ref 1	RADAR: a rigorously annotated database of A-to-I RNA editing. Nucleic Acids Res. 2014 Jan;42(Database issue):D109-13. doi: 10.1093/nar/gkt996. Epub 2013 Oct 25.
Ref 2	N6-Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection. Cell Host Microbe. 2016 Nov 9;20(5):654-665. doi: 10.1016/j.chom.2016.09.015. Epub 2016 Oct 20.
Ref 3	DART-seq: an antibody-free method for global m(6)A detection. Nat Methods. 2019 Dec;16(12):1275-1280. doi: 10.1038/s41592-019-0570-0. Epub 2019 Sep 23.
Ref 4	Single-base mapping of m(6)A by an antibody-independent method. Sci Adv. 2019 Jul 3;5(7):eaax0250. doi: 10.1126/sciadv.aax0250. eCollection 2019 Jul.
Ref 5	Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell. 2012 Jun 22;149(7):1635-46. doi: 10.1016/j.cell.2012.05.003. Epub 2012 May 17.
Ref 6	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.
Ref 7	A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulation. Genes Dev. 2015 Oct 1;29(19):2037-53. doi: 10.1101/gad.269415.115. Epub 2015 Sep 24.
Ref 8	Suppression of m(6)A reader Ythdf2 promotes hematopoietic stem cell expansion. Cell Res. 2018 Sep;28(9):904-917. doi: 10.1038/s41422-018-0072-0. Epub 2018 Jul 31.

Epigenetic Target Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

Visitor Map