General Information of the Epigenetic Target (ID: EPITAR00243)
Target Name Tripartite motif containing 5 (TRIM5)
Synonyms
RNF88; TRIM5alpha; tripartite motif-containing 5
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Gene Name TRIM5
Sequence
MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKTNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRLQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWVDVTVAPNNISCAVISEDKRQVSSPKPQIIYGARGTRYQTFVNFNYCTGILGSQSITSGKHYWEVDVSKKTAWILGVCAGFQPDAMCNIEKNENYQPKYGYWVIGLEEGVKCSAFQDSSFHTPSVPFIVPLSVIICPDRVGVFLDYEACTVSFFNITNHGFLIYKFSHCSFSQPVFPYLNPRKCGVPMTLCSPSS
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Family TRIM/RBCC family
Function
Capsid-specific restriction factor that prevents infection from non-host-adapted retroviruses. Blocks viral replication early in the life cycle, after viral entry but before reverse transcription. In addition to acting as a capsid-specific restriction factor, also acts as a pattern recognition receptor that activates innate immune signaling in response to the retroviral capsid lattice. Binding to the viral capsid triggers its E3 ubiquitin ligase activity, and in concert with the heterodimeric ubiquitin conjugating enzyme complex UBE2V1-UBE2N (also known as UBC13-UEV1A complex) generates 'Lys-63'-linked polyubiquitin chains, which in turn are catalysts in the autophosphorylation of the MAP3K7/TAK1 complex (includes TAK1, TAB2, and TAB3). Activation of the MAP3K7/TAK1 complex by autophosphorylation results in the induction and expression of NF-kappa-B and MAPK-responsive inflammatory genes, thereby leading to an innate immune response in the infected cell. Restricts infection by N-tropic murine leukemia virus (N-MLV), equine infectious anemia virus (EIAV), simian immunodeficiency virus of macaques (SIVmac), feline immunodeficiency virus (FIV), and bovine immunodeficiency virus (BIV) (PubMed:17156811). Plays a role in regulating autophagy through activation of autophagy regulator BECN1 by causing its dissociation from its inhibitors BCL2 and TAB2 (PubMed:25127057). Also plays a role in autophagy by acting as a selective autophagy receptor which recognizes and targets HIV-1 capsid protein p24 for autophagic destruction (PubMed:25127057).
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Gene ID 85363
HGNC ID HGNC:16276
Ensembl Gene ID ENSG00000132256
KEGG ID hsa:85363
Chromosomal Location 11p15.4
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00243)
Tripartite motif containing 5 (TRIM5)
Adenosine-to-Inosine editing (A-to-I)
In total 13 m6A sequence/site(s) in this target gene
mod ID: A2ISITE004519 Click to Show/Hide the Full List
mod site chr11:5668151-5668152:- [1]
Sequence CTTCCCAAGTAGTTGGAACTACAGGCTCATGCCACCATGCT
Transcript ID List ENST00000465634.5; ENST00000438025.5; ENST00000433961.5; ENST00000380027.5; ENST00000380034.7; ENST00000396847.7; ENST00000380259.7; ENST00000483835.5; ENST00000492086.5
External Link RMBase: RNA-editing_site_20069
mod ID: A2ISITE004520 Click to Show/Hide the Full List
mod site chr11:5668233-5668234:- [1]
Sequence AACCCAGACTGGAGTGCAGTAGTGTGATCCTAGCTCAGTGC
Transcript ID List ENST00000465634.5; ENST00000380027.5; ENST00000492086.5; ENST00000433961.5; ENST00000380034.7; ENST00000483835.5; ENST00000438025.5; ENST00000380259.7; ENST00000396847.7
External Link RMBase: RNA-editing_site_20070
mod ID: A2ISITE004521 Click to Show/Hide the Full List
mod site chr11:5668587-5668588:- [1]
Sequence GCATTATGGTGGGCGCCAGTAATCCCAGCTACTCGGGAGGT
Transcript ID List ENST00000380034.7; ENST00000433961.5; rmsk_3465789; ENST00000492086.5; ENST00000380259.7; ENST00000396847.7; ENST00000483835.5; ENST00000465634.5; ENST00000380027.5; ENST00000438025.5
External Link RMBase: RNA-editing_site_20071
mod ID: A2ISITE004522 Click to Show/Hide the Full List
mod site chr11:5668722-5668723:- [1]
Sequence GTGTCGTGGCACATGCCTGTAATCTCAGCACTTTGGGAGGC
Transcript ID List ENST00000380259.7; ENST00000438025.5; ENST00000380034.7; rmsk_3465789; ENST00000492086.5; ENST00000433961.5; ENST00000396847.7; ENST00000380027.5; ENST00000483835.5; ENST00000465634.5
External Link RMBase: RNA-editing_site_20072
mod ID: A2ISITE004523 Click to Show/Hide the Full List
mod site chr11:5669874-5669875:- [1]
Sequence TCAAACAATTCTTGTGCCTCAGCCGCCTGAGTAGCTGGGAT
Transcript ID List ENST00000433961.5; ENST00000380259.7; ENST00000465634.5; ENST00000380034.7; ENST00000380027.5; ENST00000492086.5; ENST00000396847.7; ENST00000483835.5; ENST00000438025.5
External Link RMBase: RNA-editing_site_20073
mod ID: A2ISITE004524 Click to Show/Hide the Full List
mod site chr11:5669891-5669892:- [1]
Sequence ACCTCCGCCTCCTGGGTTCAAACAATTCTTGTGCCTCAGCC
Transcript ID List ENST00000396847.7; ENST00000483835.5; ENST00000380027.5; ENST00000433961.5; ENST00000438025.5; ENST00000380259.7; ENST00000465634.5; ENST00000380034.7; ENST00000492086.5
External Link RMBase: RNA-editing_site_20074
mod ID: A2ISITE004525 Click to Show/Hide the Full List
mod site chr11:5669892-5669893:- [2]
Sequence AACCTCCGCCTCCTGGGTTCAAACAATTCTTGTGCCTCAGC
Transcript ID List ENST00000396847.7; ENST00000492086.5; ENST00000438025.5; ENST00000380259.7; ENST00000433961.5; ENST00000483835.5; ENST00000380027.5; ENST00000465634.5; ENST00000380034.7
External Link RMBase: RNA-editing_site_20075
mod ID: A2ISITE004526 Click to Show/Hide the Full List
mod site chr11:5670441-5670442:- [1]
Sequence GCGCAGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGC
Transcript ID List ENST00000438025.5; ENST00000396847.7; ENST00000433961.5; ENST00000380259.7; ENST00000380034.7; rmsk_3465792; ENST00000492086.5; ENST00000465634.5; ENST00000483835.5; ENST00000380027.5
External Link RMBase: RNA-editing_site_20076
mod ID: A2ISITE004527 Click to Show/Hide the Full List
mod site chr11:5671042-5671043:- [3]
Sequence TGTAGAGATGGGATTTCACCATGTTGCCCAGGCTGGTCTCA
Transcript ID List ENST00000380034.7; ENST00000380027.5; ENST00000438025.5; ENST00000396847.7; ENST00000433961.5; ENST00000380259.7; ENST00000465634.5; ENST00000492086.5; ENST00000483835.5
External Link RMBase: RNA-editing_site_20077
mod ID: A2ISITE004528 Click to Show/Hide the Full List
mod site chr11:5671103-5671104:- [1]
Sequence ACCCCAGACTAGCTGGGACTACAGCTCCGCACTACCATGCT
Transcript ID List ENST00000483835.5; ENST00000433961.5; ENST00000396847.7; ENST00000492086.5; ENST00000438025.5; ENST00000380027.5; ENST00000380259.7; ENST00000465634.5; ENST00000380034.7
External Link RMBase: RNA-editing_site_20078
mod ID: A2ISITE004529 Click to Show/Hide the Full List
mod site chr11:5671163-5671164:- [1]
Sequence GTGCGATCTTGACTCACTATAGCCTCGACATCCTGAACTCA
Transcript ID List ENST00000438025.5; ENST00000433961.5; ENST00000380027.5; ENST00000483835.5; ENST00000380034.7; ENST00000396847.7; ENST00000380259.7; ENST00000492086.5; ENST00000465634.5
External Link RMBase: RNA-editing_site_20079
mod ID: A2ISITE004530 Click to Show/Hide the Full List
mod site chr11:5672375-5672376:- [1]
Sequence CTACTAAAAATACAAAAATTAGCTGGACATGGTGGCACGTG
Transcript ID List ENST00000492086.5; ENST00000465634.5; ENST00000380259.7; ENST00000396847.7; ENST00000438025.5; ENST00000380027.5; rmsk_3465796; ENST00000483835.5; ENST00000380034.7; ENST00000433961.5
External Link RMBase: RNA-editing_site_20080
mod ID: A2ISITE004531 Click to Show/Hide the Full List
mod site chr11:5672482-5672483:- [1]
Sequence TGCAGGGGCTCACACCTGTAATCTCAGCAATTTGGGAGGCT
Transcript ID List ENST00000396847.7; ENST00000465634.5; ENST00000380034.7; ENST00000492086.5; ENST00000438025.5; ENST00000380259.7; rmsk_3465796; ENST00000483835.5; ENST00000433961.5; ENST00000380027.5
External Link RMBase: RNA-editing_site_20081
5-methylcytidine (m5C)
In total 7 m6A sequence/site(s) in this target gene
mod ID: M5CSITE005048 Click to Show/Hide the Full List
mod site chr11:5663943-5663944:-
Sequence CTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACGGCGCCC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000642298.1; ENST00000380259.7; ENST00000380027.5; ENST00000438025.5; ENST00000396847.7; ENST00000433961.5; ENST00000380034.7
External Link RMBase: m5C_site_6816
mod ID: M5CSITE005049 Click to Show/Hide the Full List
mod site chr11:5663952-5663953:-
Sequence CGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000396847.7; ENST00000642298.1; ENST00000380027.5; ENST00000380034.7; ENST00000433961.5; ENST00000438025.5; ENST00000380259.7
External Link RMBase: m5C_site_6817
mod ID: M5CSITE005050 Click to Show/Hide the Full List
mod site chr11:5663959-5663960:-
Sequence ATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000433961.5; ENST00000438025.5; ENST00000642298.1; ENST00000380034.7; ENST00000380259.7; ENST00000396847.7; ENST00000380027.5
External Link RMBase: m5C_site_6818
mod ID: M5CSITE005051 Click to Show/Hide the Full List
mod site chr11:5663960-5663961:-
Sequence GATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000380259.7; ENST00000380027.5; ENST00000396847.7; ENST00000642298.1; ENST00000433961.5; ENST00000438025.5; ENST00000380034.7
External Link RMBase: m5C_site_6819
mod ID: M5CSITE005052 Click to Show/Hide the Full List
mod site chr11:5663961-5663962:-
Sequence TGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000380027.5; ENST00000380034.7; ENST00000433961.5; ENST00000380259.7; ENST00000642298.1; ENST00000396847.7; ENST00000438025.5
External Link RMBase: m5C_site_6820
mod ID: M5CSITE005053 Click to Show/Hide the Full List
mod site chr11:5663963-5663964:-
Sequence GGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000433961.5; ENST00000438025.5; ENST00000642298.1; ENST00000380259.7; ENST00000396847.7; ENST00000380027.5; ENST00000380034.7
External Link RMBase: m5C_site_6821
mod ID: M5CSITE005054 Click to Show/Hide the Full List
mod site chr11:5663964-5663965:-
Sequence AGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000642298.1; ENST00000433961.5; ENST00000380027.5; ENST00000438025.5; ENST00000380259.7; ENST00000380034.7; ENST00000396847.7
External Link RMBase: m5C_site_6822
N6-methyladenosine (m6A)
In total 35 m6A sequence/site(s) in this target gene
mod ID: M6ASITE003580 Click to Show/Hide the Full List
mod site chr11:5663882-5663883:- [4]
Sequence AAATAATTTTTGTATTAAAAACTTCACATTAAATAAGTGCT
Motif Score 2.627720238
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000380027.5; ENST00000380034.7; ENST00000642298.1; ENST00000380259.7; ENST00000396847.7; ENST00000433961.5; ENST00000438025.5
External Link RMBase: m6A_site_128614
mod ID: M6ASITE003581 Click to Show/Hide the Full List
mod site chr11:5664547-5664548:- [4]
Sequence CCTATACCTCATAAAATGAGACCGCTATTTAGGTATTACTT
Motif Score 2.876744048
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000396847.7; ENST00000438025.5; ENST00000380027.5; ENST00000433961.5; ENST00000483835.5; ENST00000642298.1; ENST00000380259.7; ENST00000380034.7
External Link RMBase: m6A_site_128615
mod ID: M6ASITE003582 Click to Show/Hide the Full List
mod site chr11:5664572-5664573:- [5]
Sequence TTTCCGTACTCCTAAGGAAAACTGACCTATACCTCATAAAA
Motif Score 2.627720238
Cell/Tissue List HeLa; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000438025.5; ENST00000380034.7; ENST00000483835.5; ENST00000396847.7; ENST00000380259.7; ENST00000433961.5; ENST00000380027.5; ENST00000642298.1
External Link RMBase: m6A_site_128616
mod ID: M6ASITE003583 Click to Show/Hide the Full List
mod site chr11:5664742-5664743:- [5]
Sequence GGTGCATCTCATACACCTGAACTCATTTGCATCATTTTAAC
Motif Score 3.373380952
Cell/Tissue List HeLa; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000433961.5; ENST00000380027.5; ENST00000438025.5; ENST00000396847.7; ENST00000380034.7; ENST00000483835.5; ENST00000642298.1; ENST00000380259.7
External Link RMBase: m6A_site_128617
mod ID: M6ASITE003584 Click to Show/Hide the Full List
mod site chr11:5664807-5664808:- [5]
Sequence TGTGCTCACCAAGCTCTTGAACCTTCTTACACACTCAGCCC
Motif Score 2.930744048
Cell/Tissue List HeLa; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000483835.5; ENST00000380034.7; ENST00000380259.7; ENST00000642298.1; ENST00000438025.5; ENST00000433961.5; ENST00000380027.5; ENST00000396847.7
External Link RMBase: m6A_site_128618
mod ID: M6ASITE003585 Click to Show/Hide the Full List
mod site chr11:5664923-5664924:- [5]
Sequence CTCATTCTTCAATATCACAAACCATGGATTTCTCATCTATA
Motif Score 2.185083333
Cell/Tissue List HeLa; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000380034.7; ENST00000380027.5; ENST00000642298.1; ENST00000396847.7; ENST00000483835.5; ENST00000433961.5; ENST00000438025.5; ENST00000380259.7
External Link RMBase: m6A_site_128619
mod ID: M6ASITE003587 Click to Show/Hide the Full List
mod site chr11:5664962-5664963:- [5]
Sequence TCGTGTTGGAGTTTTCCTAGACTATGAGGCTTGCACTGTCT
Motif Score 3.319380952
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000380034.7; ENST00000396847.7; ENST00000380027.5; ENST00000438025.5; ENST00000483835.5; ENST00000433961.5; ENST00000642298.1; ENST00000380259.7
External Link RMBase: m6A_site_128620
mod ID: M6ASITE003588 Click to Show/Hide the Full List
mod site chr11:5665185-5665186:- [5]
Sequence AGGTAGACGTGTCCAAGAAAACTGCTTGGATCCTGGGGGTA
Motif Score 2.627720238
Cell/Tissue List HeLa; Huh7; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000380034.7; ENST00000396847.7; ENST00000483835.5; ENST00000380259.7; ENST00000380027.5; ENST00000642298.1; ENST00000438025.5; ENST00000433961.5
External Link RMBase: m6A_site_128621
mod ID: M6ASITE003589 Click to Show/Hide the Full List
mod site chr11:5665216-5665217:- [5]
Sequence CAAAGTATCACATCAGGGAAACATTACTGGGAGGTAGACGT
Motif Score 2.20572619
Cell/Tissue List HeLa; fibroblasts; A549; Huh7; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000380034.7; ENST00000433961.5; ENST00000380027.5; ENST00000396847.7; ENST00000483835.5; ENST00000380259.7; ENST00000642298.1; ENST00000438025.5
External Link RMBase: m6A_site_128622
mod ID: M6ASITE003590 Click to Show/Hide the Full List
mod site chr11:5665278-5665279:- [5]
Sequence CACGAGGGACAAGATACCAGACATTTGTGAATTTCAATTAT
Motif Score 2.897386905
Cell/Tissue List HeLa; fibroblasts; A549; MT4; Huh7; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000438025.5; ENST00000396847.7; ENST00000380034.7; ENST00000380259.7; ENST00000433961.5; ENST00000380027.5; ENST00000642298.1; ENST00000483835.5
External Link RMBase: m6A_site_128623
mod ID: M6ASITE003591 Click to Show/Hide the Full List
mod site chr11:5665290-5665291:- [6]
Sequence TAATATATGGGGCACGAGGGACAAGATACCAGACATTTGTG
Motif Score 3.643047619
Cell/Tissue List A549; MT4; Huh7; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000642298.1; ENST00000433961.5; ENST00000396847.7; ENST00000380259.7; ENST00000380027.5; ENST00000483835.5; ENST00000380034.7; ENST00000438025.5
External Link RMBase: m6A_site_128624
mod ID: M6ASITE003592 Click to Show/Hide the Full List
mod site chr11:5665315-5665316:- [7]
Sequence CAAGTGAGCTCTCCGAAACCACAGATAATATATGGGGCACG
Motif Score 2.053113095
Cell/Tissue List kidney
Seq Type List m6A-REF-seq
Transcript ID List ENST00000438025.5; ENST00000380259.7; ENST00000433961.5; ENST00000642298.1; ENST00000483835.5; ENST00000380027.5; ENST00000380034.7; ENST00000396847.7
External Link RMBase: m6A_site_128625
mod ID: M6ASITE003593 Click to Show/Hide the Full List
mod site chr11:5665318-5665319:- [8]
Sequence AGACAAGTGAGCTCTCCGAAACCACAGATAATATATGGGGC
Motif Score 2.185083333
Cell/Tissue List MT4; Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000380027.5; ENST00000642298.1; ENST00000433961.5; ENST00000438025.5; ENST00000380034.7; ENST00000380259.7; ENST00000483835.5; ENST00000396847.7
External Link RMBase: m6A_site_128626
mod ID: M6ASITE003594 Click to Show/Hide the Full List
mod site chr11:5665336-5665337:- [7]
Sequence GTCATTTCTGAAGATAAGAGACAAGTGAGCTCTCCGAAACC
Motif Score 2.897386905
Cell/Tissue List liver; MT4; Huh7
Seq Type List m6A-REF-seq; MeRIP-seq
Transcript ID List ENST00000380259.7; ENST00000396847.7; ENST00000483835.5; ENST00000642298.1; ENST00000438025.5; ENST00000380034.7; ENST00000380027.5; ENST00000433961.5
External Link RMBase: m6A_site_128627
mod ID: M6ASITE003595 Click to Show/Hide the Full List
mod site chr11:5665373-5665374:- [8]
Sequence TGATGTGACAGTGGCTCCAAACAACATTTCATGTGCTGTCA
Motif Score 2.20572619
Cell/Tissue List MT4; Huh7; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000483835.5; ENST00000380034.7; ENST00000380259.7; ENST00000380027.5; ENST00000433961.5; ENST00000642298.1; ENST00000396847.7; ENST00000438025.5
External Link RMBase: m6A_site_128628
mod ID: M6ASITE003596 Click to Show/Hide the Full List
mod site chr11:5666049-5666050:- [5]
Sequence TGACCTTGAAGAAGCCAGAAACTTTTCCAAAAAATCAAAGG
Motif Score 2.627720238
Cell/Tissue List HeLa; HepG2; Jurkat; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq
Transcript ID List ENST00000492086.5; ENST00000483835.5; ENST00000380027.5; ENST00000642298.1; ENST00000465634.5; ENST00000380259.7; ENST00000433961.5; ENST00000380034.7; ENST00000438025.5; ENST00000396847.7
External Link RMBase: m6A_site_128629
mod ID: M6ASITE003598 Click to Show/Hide the Full List
mod site chr11:5678096-5678097:- [5]
Sequence TTAACAATGTTCTCTGCAGGACCGCTTTTCTGAATCAATTG
Motif Score 3.622404762
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000433961.5; ENST00000492086.5; ENST00000380027.5; ENST00000487241.1; ENST00000483835.5; ENST00000396847.7; ENST00000380259.7; ENST00000438025.5; ENST00000465634.5; ENST00000380034.7
External Link RMBase: m6A_site_128630
mod ID: M6ASITE003599 Click to Show/Hide the Full List
mod site chr11:5678274-5678275:- [5]
Sequence AAACTGAGATGGTGCAGCAGACCCAGTCCCTGAGAGAGCTC
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; A549; HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000465634.5; ENST00000433961.5; ENST00000380034.7; ENST00000487241.1; ENST00000380027.5; ENST00000380259.7; ENST00000492086.5; ENST00000483835.5; ENST00000438025.5; ENST00000396847.7
External Link RMBase: m6A_site_128631
mod ID: M6ASITE003600 Click to Show/Hide the Full List
mod site chr11:5678292-5678293:- [5]
Sequence AAAGCCTTACGAACTCTGAAACTGAGATGGTGCAGCAGACC
Motif Score 2.627720238
Cell/Tissue List HeLa; HepG2; A549; HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; H1299; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000487241.1; ENST00000492086.5; ENST00000465634.5; ENST00000396847.7; ENST00000380034.7; ENST00000380027.5; ENST00000380259.7; ENST00000438025.5; ENST00000433961.5; ENST00000483835.5
External Link RMBase: m6A_site_128632
mod ID: M6ASITE003601 Click to Show/Hide the Full List
mod site chr11:5678300-5678301:- [5]
Sequence CATTCTGAAAAGCCTTACGAACTCTGAAACTGAGATGGTGC
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; A549; HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; CD8T; H1299; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000380034.7; ENST00000396847.7; ENST00000380027.5; ENST00000483835.5; ENST00000433961.5; ENST00000492086.5; ENST00000465634.5; ENST00000438025.5; ENST00000380259.7; ENST00000487241.1
External Link RMBase: m6A_site_128633
mod ID: M6ASITE003602 Click to Show/Hide the Full List
mod site chr11:5678321-5678322:- [5]
Sequence CCTGGAGAAGGAGGAGGAAGACATTCTGAAAAGCCTTACGA
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000380027.5; ENST00000438025.5; ENST00000412903.1; ENST00000380034.7; ENST00000487241.1; ENST00000380259.7; ENST00000465634.5; ENST00000492086.5; ENST00000433961.5; ENST00000396847.7; ENST00000483835.5
External Link RMBase: m6A_site_128634
mod ID: M6ASITE003603 Click to Show/Hide the Full List
mod site chr11:5678342-5678343:- [5]
Sequence GGAGAGCAATGAGCTGCAAAACCTGGAGAAGGAGGAGGAAG
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000465634.5; ENST00000380259.7; ENST00000412903.1; ENST00000492086.5; ENST00000438025.5; ENST00000483835.5; ENST00000433961.5; ENST00000380034.7; ENST00000380027.5; ENST00000396847.7; ENST00000487241.1
External Link RMBase: m6A_site_128635
mod ID: M6ASITE003604 Click to Show/Hide the Full List
mod site chr11:5678369-5678370:- [5]
Sequence GCAACTGAGAGACATCCTGGACTGGGAGGAGAGCAATGAGC
Motif Score 4.065041667
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000492086.5; ENST00000380259.7; ENST00000433961.5; ENST00000465634.5; ENST00000483835.5; ENST00000380034.7; ENST00000380027.5; ENST00000438025.5; ENST00000412903.1; ENST00000396847.7; ENST00000487241.1
External Link RMBase: m6A_site_128636
mod ID: M6ASITE003605 Click to Show/Hide the Full List
mod site chr11:5678378-5678379:- [5]
Sequence AGATTTTGAGCAACTGAGAGACATCCTGGACTGGGAGGAGA
Motif Score 2.897386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000412903.1; ENST00000492086.5; ENST00000487241.1; ENST00000380034.7; ENST00000483835.5; ENST00000465634.5; ENST00000380027.5; ENST00000380259.7; ENST00000438025.5; ENST00000396847.7; ENST00000433961.5
External Link RMBase: m6A_site_128637
mod ID: M6ASITE003606 Click to Show/Hide the Full List
mod site chr11:5678412-5678413:- [5]
Sequence CTCAAATACAGTATGACAAAACCAACGTCTTGGCAGATTTT
Motif Score 2.185083333
Cell/Tissue List HeLa; CD34; HEK293T; U2OS; H1A; H1B; fibroblasts; A549; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000380034.7; ENST00000492086.5; ENST00000380027.5; ENST00000487241.1; ENST00000412903.1; ENST00000465634.5; ENST00000380259.7; ENST00000433961.5; ENST00000483835.5; ENST00000396847.7; ENST00000438025.5
External Link RMBase: m6A_site_128638
mod ID: M6ASITE003607 Click to Show/Hide the Full List
mod site chr11:5679874-5679875:- [5]
Sequence TGTGCACGCCATGGAGAGAAACTTCTACTCTTCTGTCAGGA
Motif Score 2.627720238
Cell/Tissue List HeLa; CD34; LCLs; Huh7; peripheral-blood; iSLK; TIME; MSC; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000487241.1; ENST00000380034.7; ENST00000396847.7; ENST00000412903.1; ENST00000433961.5; ENST00000380027.5
External Link RMBase: m6A_site_128639
mod ID: M6ASITE003609 Click to Show/Hide the Full List
mod site chr11:5679980-5679981:- [5]
Sequence GATCAGTTACCAGCCTGAGAACATACGGCCTAATCGGCATG
Motif Score 2.951386905
Cell/Tissue List HeLa; CD34; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000433961.5; ENST00000419850.1; ENST00000412903.1; ENST00000380034.7; ENST00000380027.5; ENST00000396847.7
External Link RMBase: m6A_site_128640
mod ID: M6ASITE003610 Click to Show/Hide the Full List
mod site chr11:5680031-5680032:- [5]
Sequence CCACAAGAAGTCCATGCTAGACAAAGGAGAGAGTAGCTGCC
Motif Score 2.897386905
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hESC-HEK293T; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000412903.1; ENST00000380027.5; ENST00000380034.7; ENST00000419850.1; ENST00000433961.5; ENST00000396847.7
External Link RMBase: m6A_site_128641
mod ID: M6ASITE003611 Click to Show/Hide the Full List
mod site chr11:5680052-5680053:- [5]
Sequence CCAAGCATGCCTCACTGCAAACCACAAGAAGTCCATGCTAG
Motif Score 2.185083333
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000380027.5; ENST00000380034.7; ENST00000412903.1; ENST00000396847.7; ENST00000419850.1; ENST00000433961.5
External Link RMBase: m6A_site_128642
mod ID: M6ASITE003612 Click to Show/Hide the Full List
mod site chr11:5680091-5680092:- [5]
Sequence GACACAACCCCTGAGCCTGGACTGCGGCCACAGCTTCTGCC
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; LCLs; CD8T; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000396847.7; ENST00000380034.7; ENST00000412903.1; ENST00000433961.5; ENST00000380027.5; ENST00000419850.1
External Link RMBase: m6A_site_128643
mod ID: M6ASITE003613 Click to Show/Hide the Full List
mod site chr11:5680117-5680118:- [5]
Sequence ACCTGCCCCATCTGCCTGGAACTCCTGACACAACCCCTGAG
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hESCs; fibroblasts; GM12878; LCLs; CD8T; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000380034.7; ENST00000419850.1; ENST00000433961.5; ENST00000396847.7; ENST00000380027.5; ENST00000412903.1
External Link RMBase: m6A_site_128644
mod ID: M6ASITE003614 Click to Show/Hide the Full List
mod site chr11:5680203-5680204:- [5]
Sequence GAGGAACCTCAGCAGCCAGGACAGGCAGGAGCAGTGGAATA
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; A549; U2OS; GM12878; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000396847.7; ENST00000380027.5; ENST00000380034.7; ENST00000419850.1; ENST00000433961.5; ENST00000412903.1
External Link RMBase: m6A_site_128645
mod ID: M6ASITE003615 Click to Show/Hide the Full List
mod site chr11:5680218-5680219:- [5]
Sequence GGGATCTGTGAACAAGAGGAACCTCAGCAGCCAGGACAGGC
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T; A549; U2OS; GM12878; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000419850.1; ENST00000380034.7; ENST00000396847.7; ENST00000412903.1; ENST00000433961.5; ENST00000380027.5
External Link RMBase: m6A_site_128646
mod ID: M6ASITE003616 Click to Show/Hide the Full List
mod site chr11:5680227-5680228:- [5]
Sequence AATCATGCAGGGATCTGTGAACAAGAGGAACCTCAGCAGCC
Motif Score 2.951386905
Cell/Tissue List HeLa; U2OS; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000419850.1; ENST00000412903.1; ENST00000380034.7; ENST00000380027.5; ENST00000433961.5; ENST00000396847.7
External Link RMBase: m6A_site_128647
mod ID: M6ASITE003617 Click to Show/Hide the Full List
mod site chr11:5683993-5683994:- [5]
Sequence GCTCAGGAGGGAAGCTGCAGACCTTCGCGGTGAGTGTTACA
Motif Score 2.876744048
Cell/Tissue List HeLa; U2OS; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000419850.1; ENST00000380027.5; ENST00000380034.7; ENST00000412903.1; ENST00000396847.7
External Link RMBase: m6A_site_128648