General Information of the Epigenetic Target (ID: EPITAR00176)
Target Name Long Terminal Repeat 7 (LTR7)
Gene Name LTR7
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00176)
Long Terminal Repeat 7 (LTR7)
N4-acetylcytidine (ac4C)
In total 2 m6A sequence/site(s) in this target gene
mod ID: AC4SITE000077 Click to Show/Hide the Full List
mod site chr3:176322012-176322013:- [1]
Sequence TCCTGTGACTTGCAGGTATACGCCCAGATGGCCTGAACTAA
Cell/Tissue List H1
Seq Type List ac4C-seq
Transcript ID List rmsk_1174006
External Link RMBase: ac4C_site_1423
mod ID: AC4SITE000130 Click to Show/Hide the Full List
mod site chr8:114287724-114287725:+ [1]
Sequence TGCTGGTCTCTTCACAGATACGCGCATGAAAGGAAGATTAA
Cell/Tissue List H1
Seq Type List ac4C-seq
Transcript ID List ENST00000520543.1; rmsk_2620211; ENST00000507929.2; ENST00000521523.5; ENST00000519248.1; ENST00000523682.1
External Link RMBase: ac4C_site_1735
Adenosine-to-Inosine editing (A-to-I)
In total 3 m6A sequence/site(s) in this target gene
mod ID: A2ISITE004292 Click to Show/Hide the Full List
mod site chr10:70626384-70626385:+ [2]
Sequence CATCTTCTATGTATTGATTTATGTCTTTGCTTGTAACTTCT
Transcript ID List rmsk_3339201
External Link RMBase: RNA-editing_site_16440
mod ID: A2ISITE000227 Click to Show/Hide the Full List
mod site chr3:190144612-190144613:+ [2]
Sequence TGTCTCCTGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATA
Transcript ID List ENST00000412203.1; rmsk_1201310
External Link RMBase: RNA-editing_site_101852
mod ID: A2ISITE001990 Click to Show/Hide the Full List
mod site chr7:32832584-32832585:+ [2]
Sequence AGGCCTCTGAGCCCAAGCTAAGCCATCACATCCCCTGTGAC
Transcript ID List rmsk_2199643; ENST00000426647.2
External Link RMBase: RNA-editing_site_121721
N6-methyladenosine (m6A)
In total 41 m6A sequence/site(s) in this target gene
mod ID: M6ASITE031809 Click to Show/Hide the Full List
mod site chr1:70367634-70367635:+ [3]
Sequence AGCTTAGTGATGTGTGTCAGACCTCTGAGCCCAAGCAAAGC
Motif Score 2.876744048
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List rmsk_159046; ENST00000370940.6; ENST00000531950.1; ENST00000525653.1; ENST00000361764.8; ENST00000463058.5; ENST00000359875.9
External Link RMBase: m6A_site_35839
mod ID: M6ASITE031810 Click to Show/Hide the Full List
mod site chr1:70367683-70367684:+ [4]
Sequence CCCCTGTGACCTGCATGTATACATCCAGATGGCCTGAAGCA
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000359875.9; ENST00000361764.8; ENST00000370940.6; ENST00000531950.1; ENST00000463058.5; rmsk_159046; ENST00000525653.1
External Link RMBase: m6A_site_35840
mod ID: M6ASITE031811 Click to Show/Hide the Full List
mod site chr1:70367715-70367716:+ [4]
Sequence CCTGAAGCAAGTGAAGAATCACAAAAGAAGTGAAAAGGGCC
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000370940.6; ENST00000361764.8; ENST00000531950.1; ENST00000359875.9; ENST00000525653.1; rmsk_159046; ENST00000463058.5
External Link RMBase: m6A_site_35841
mod ID: M6ASITE031812 Click to Show/Hide the Full List
mod site chr1:70367756-70367757:+ [4]
Sequence GGTTCCTGCCTTAACTGATGACATTCCACCATTGTGATTTG
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000531950.1; rmsk_159046; ENST00000361764.8; ENST00000370940.6; ENST00000359875.9; ENST00000463058.5
External Link RMBase: m6A_site_35842
mod ID: M6ASITE031813 Click to Show/Hide the Full List
mod site chr1:70367793-70367794:+ [5]
Sequence TTTGTTCCTGCCCCACCTTAACTGAGCGATTAACCTGTGAA
Motif Score 2.590089286
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List rmsk_159046; ENST00000370940.6; ENST00000463058.5; ENST00000531950.1; ENST00000361764.8; ENST00000359875.9
External Link RMBase: m6A_site_35843
mod ID: M6ASITE031814 Click to Show/Hide the Full List
mod site chr1:70367813-70367814:+ [3]
Sequence ACTGAGCGATTAACCTGTGAACTTCCTTCTCCTGGCTCAGA
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; hESCs; fibroblasts; A549; MM6; Huh7; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq; DART-seq
Transcript ID List ENST00000359875.9; ENST00000370940.6; ENST00000463058.5; rmsk_159046; ENST00000361764.8; ENST00000531950.1
External Link RMBase: m6A_site_35844
mod ID: M6ASITE031815 Click to Show/Hide the Full List
mod site chr1:70367882-70367883:+ [3]
Sequence CCGCCCCTGCCTGCCATAGAACAACCCCCTTTGATTGTAAT
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; hESC-HEK293T; fibroblasts; A549; LCLs; Huh7; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq; DART-seq; MAZTER-seq
Transcript ID List ENST00000359875.9; ENST00000463058.5; ENST00000361764.8; rmsk_159046; ENST00000370940.6; ENST00000531950.1
External Link RMBase: m6A_site_35845
mod ID: M6ASITE031816 Click to Show/Hide the Full List
mod site chr1:70367959-70367960:+ [5]
Sequence ACCCCTATCTCCCTTCGCTGACACTCTCTTTGGACTCAGCC
Motif Score 2.859755952
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000370940.6; ENST00000463058.5; rmsk_159046; ENST00000531950.1; ENST00000359875.9
External Link RMBase: m6A_site_35846
mod ID: M6ASITE031817 Click to Show/Hide the Full List
mod site chr1:70367972-70367973:+ [3]
Sequence TTCGCTGACACTCTCTTTGGACTCAGCCTGCCTGCACCTAG
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; LCLs; Huh7; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000463058.5; ENST00000359875.9; ENST00000370940.6; rmsk_159046; ENST00000531950.1
External Link RMBase: m6A_site_35847
mod ID: M6ASITE036255 Click to Show/Hide the Full List
mod site chr1:89181193-89181194:- [6]
Sequence TTCACTGACTGTCTTTTCGGACTCAGCCAGCCTGCACCCAG
Motif Score 4.065041667
Cell/Tissue List GM12878
Seq Type List m6A-seq
Transcript ID List ENST00000355754.7; rmsk_190656
External Link RMBase: m6A_site_38992
mod ID: M6ASITE036256 Click to Show/Hide the Full List
mod site chr1:89181283-89181284:- [6]
Sequence CCACCTCTGCCCGCCAGAGAACAACCCCCTTTGACTGTAAT
Motif Score 2.951386905
Cell/Tissue List GM12878; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000355754.7; rmsk_190656
External Link RMBase: m6A_site_38993
mod ID: M6ASITE042526 Click to Show/Hide the Full List
mod site chr1:112820221-112820222:- [7]
Sequence CATTCACTGACTCTTTTTGGACTCAGCCCACCTGCACCCAG
Motif Score 4.065041667
Cell/Tissue List hESCs
Seq Type List m6A-seq
Transcript ID List rmsk_232315; ENST00000433505.5; ENST00000401018.5
External Link RMBase: m6A_site_45723
mod ID: M6ASITE042527 Click to Show/Hide the Full List
mod site chr1:112820309-112820310:- [4]
Sequence CCACTCCTGCCTAACAGAGAACAATCCCCTTTGACTGTAAT
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T; hESCs
Seq Type List MAZTER-seq; m6A-seq
Transcript ID List ENST00000433505.5; rmsk_232315; ENST00000449572.2; ENST00000401018.5
External Link RMBase: m6A_site_45724
mod ID: M6ASITE042528 Click to Show/Hide the Full List
mod site chr1:112820443-112820444:- [4]
Sequence CCTGAAGTAACTGAAGAATCACAAAAGAAGTGAAAATGGCG
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000433505.5; ENST00000401018.5; ENST00000449572.2; rmsk_232315
External Link RMBase: m6A_site_45725
mod ID: M6ASITE043502 Click to Show/Hide the Full List
mod site chr1:114032394-114032395:+ [8]
Sequence TTCACTGACTCTCTTTTTGGACTTAGCCCACCTGCACCCAG
Motif Score 4.065041667
Cell/Tissue List H1B; H1A
Seq Type List m6A-seq
Transcript ID List ENST00000632517.1; rmsk_234873; ENST00000633022.1
External Link RMBase: m6A_site_46408
mod ID: M6ASITE043503 Click to Show/Hide the Full List
mod site chr1:114032424-114032425:+ [8]
Sequence CCTGCACCCAGGGGAAATAAACAGCCTTGTTGCTCACACAA
Motif Score 2.20572619
Cell/Tissue List H1B; H1A; hESCs; fibroblasts
Seq Type List m6A-seq
Transcript ID List ENST00000633022.1; rmsk_234873; ENST00000632517.1
External Link RMBase: m6A_site_46409
mod ID: M6ASITE086577 Click to Show/Hide the Full List
mod site chr1:224010470-224010471:+ [9]
Sequence CCGTCCCTGCCCACCAGAGAACAACCCCCTTTGACTGTAAT
Motif Score 2.951386905
Cell/Tissue List HEK293T; Huh7
Seq Type List MeRIP-seq
Transcript ID List rmsk_396776; ENST00000540997.2
External Link RMBase: m6A_site_80762
mod ID: M6ASITE086578 Click to Show/Hide the Full List
mod site chr1:224010519-224010520:+ [9]
Sequence ACCCACCCAAATCCTATAAAACAGCCCCACCCCTGTCTCCC
Motif Score 2.20572619
Cell/Tissue List HEK293T; Huh7
Seq Type List MeRIP-seq
Transcript ID List rmsk_396776; ENST00000540997.2
External Link RMBase: m6A_site_80763
mod ID: M6ASITE086579 Click to Show/Hide the Full List
mod site chr1:224010560-224010561:+ [5]
Sequence TTCACTGACTCCTTTTTCAGACTCAGCCTGCCTGCACCCAG
Motif Score 3.319380952
Cell/Tissue List HEK293T; Huh7
Seq Type List MeRIP-seq; DART-seq
Transcript ID List ENST00000540997.2; rmsk_396776
External Link RMBase: m6A_site_80764
mod ID: M6ASITE086580 Click to Show/Hide the Full List
mod site chr1:224010590-224010591:+ [9]
Sequence CCTGCACCCAGGTGAAATAAACAGCCTTGTTGCTCACACAA
Motif Score 2.20572619
Cell/Tissue List HEK293T; Huh7
Seq Type List MeRIP-seq
Transcript ID List rmsk_396776; ENST00000540997.2
External Link RMBase: m6A_site_80765
mod ID: M6ASITE007837 Click to Show/Hide the Full List
mod site chr11:71505737-71505738:+ [9]
Sequence CCACTCCTGTCTGCCAGAGAACAACCCCCCTTTGACTGTAA
Motif Score 2.951386905
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000624637.1; rmsk_3582557; ENST00000527963.1; ENST00000525593.5
External Link RMBase: m6A_site_153526
mod ID: M6ASITE007838 Click to Show/Hide the Full List
mod site chr11:71505826-71505827:+ [9]
Sequence CTTTCGCTGACTCTTTTCAGACTCAGCCCGCCTGCACCCAG
Motif Score 3.319380952
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000525593.5; ENST00000624637.1; rmsk_3582557; ENST00000527963.1
External Link RMBase: m6A_site_153527
mod ID: M6ASITE013232 Click to Show/Hide the Full List
mod site chr12:54948064-54948065:- [10]
Sequence TTTGCTGACTCTCTTTTTGGACTCAGCCTGCCTGCACCCAG
Motif Score 4.065041667
Cell/Tissue List MT4
Seq Type List MeRIP-seq
Transcript ID List rmsk_3796317; ENST00000524622.5; ENST00000449076.6
External Link RMBase: m6A_site_191693
mod ID: M6ASITE013233 Click to Show/Hide the Full List
mod site chr12:54948105-54948106:- [10]
Sequence ACCTACCTAAATCCTATAAAACAGCCCCACCCCTATCTCCC
Motif Score 2.20572619
Cell/Tissue List MT4
Seq Type List MeRIP-seq
Transcript ID List ENST00000449076.6; rmsk_3796317; ENST00000524622.5
External Link RMBase: m6A_site_191694
mod ID: M6ASITE014192 Click to Show/Hide the Full List
mod site chr12:75484538-75484539:- [9]
Sequence GCTTTATTGCTCACACAAAGACTGTTTGGTGGTCTCTTCAC
Motif Score 3.319380952
Cell/Tissue List HEK293T; Huh7; TREX
Seq Type List MeRIP-seq
Transcript ID List rmsk_3833076; ENST00000547326.2
External Link RMBase: m6A_site_199541
mod ID: M6ASITE014193 Click to Show/Hide the Full List
mod site chr12:75484589-75484590:- [3]
Sequence TTCATTGACTCTCTTTTTGAACTCAGCCTGCCTGTACCCAG
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; Huh7; MSC; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000547326.2; rmsk_3833076
External Link RMBase: m6A_site_199542
mod ID: M6ASITE014194 Click to Show/Hide the Full List
mod site chr12:75484629-75484630:- [3]
Sequence CATTACCCAAATCCTATAAAACAGCTCCACCCCATCTCCCT
Motif Score 2.20572619
Cell/Tissue List HeLa; HEK293T; Huh7; HEK293A-TOA; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List rmsk_3833076; ENST00000547326.2
External Link RMBase: m6A_site_199543
mod ID: M6ASITE014195 Click to Show/Hide the Full List
mod site chr12:75484674-75484675:- [3]
Sequence CCACCCCTGCCAGCCAGAGAACAACCCCCTTTGACTGTAAT
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; Huh7; HEK293A-TOA; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000547326.2; rmsk_3833076
External Link RMBase: m6A_site_199544
mod ID: M6ASITE025082 Click to Show/Hide the Full List
mod site chr15:101072757-101072758:+ [6]
Sequence CCACTCCTGCCCGCCAGAGAACAAACCCCCTTTTTCCTTTA
Motif Score 2.951386905
Cell/Tissue List GM12878; LCLs; iSLK; MSC
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List rmsk_4435052; ENST00000388948.8; ENST00000526457.3
External Link RMBase: m6A_site_297735
mod ID: M6ASITE025083 Click to Show/Hide the Full List
mod site chr15:101072838-101072839:+ [9]
Sequence TTCACTGACTCCCTTTTCGGACTCAGCCCACCTGCGCCCAG
Motif Score 4.065041667
Cell/Tissue List LCLs
Seq Type List m6A-seq
Transcript ID List rmsk_4435052; ENST00000526457.3; ENST00000388948.8
External Link RMBase: m6A_site_297736
mod ID: M6ASITE025084 Click to Show/Hide the Full List
mod site chr15:101072868-101072869:+ [9]
Sequence CCTGCGCCCAGGTGAAATAAACAGCCTTGTTGCTCACACAA
Motif Score 2.20572619
Cell/Tissue List LCLs
Seq Type List m6A-seq
Transcript ID List ENST00000526457.3; ENST00000388948.8; rmsk_4435052
External Link RMBase: m6A_site_297737
mod ID: M6ASITE025085 Click to Show/Hide the Full List
mod site chr16:74846-74847:+ [9]
Sequence CCACTCCTCCCCGCCACAGAACAACCCCCTTTGACTGTAAT
Motif Score 2.951386905
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List rmsk_4436994; ENST00000624755.1
External Link RMBase: m6A_site_298325
mod ID: M6ASITE025086 Click to Show/Hide the Full List
mod site chr16:74885-74886:+ [9]
Sequence ATTTTCCACTGCCCGCCCAAACCCTATAAAACGGTCCCACC
Motif Score 2.185083333
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000624755.1; rmsk_4436994
External Link RMBase: m6A_site_298326
mod ID: M6ASITE025087 Click to Show/Hide the Full List
mod site chr16:74938-74939:+ [9]
Sequence CCTGACTCTCTTTTCTTCGGACTCAGCCCGCCTGCACCCAG
Motif Score 4.065041667
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000624755.1; rmsk_4436994
External Link RMBase: m6A_site_298327
mod ID: M6ASITE041241 Click to Show/Hide the Full List
mod site chr19:39493658-39493659:+ [5]
Sequence CCACTCCTGCCCGCCCTTTGACTGTAATTTTCCATTACCTT
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List rmsk_4996151; ENST00000607714.6; ENST00000595527.2; ENST00000600878.1
External Link RMBase: m6A_site_438875
mod ID: M6ASITE045508 Click to Show/Hide the Full List
mod site chr2:64252718-64252719:+ [6]
Sequence CCACTCCTGCCTGCCAGAGAACAAACCCCCTTTGACTGTAA
Motif Score 2.951386905
Cell/Tissue List HEK293T; GM12878; LCLs; Huh7
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000451350.1; rmsk_562065
External Link RMBase: m6A_site_475511
mod ID: M6ASITE049550 Click to Show/Hide the Full List
mod site chr2:201221524-201221525:+ [9]
Sequence CCATCCCTGCCAGCCAGAGAACAACCCCCTTTGACTGTAAT
Motif Score 2.951386905
Cell/Tissue List Huh7; TREX
Seq Type List MeRIP-seq
Transcript ID List ENST00000448480.1; ENST00000286186.10; rmsk_790741; ENST00000272879.9; ENST00000360132.7
External Link RMBase: m6A_site_506511
mod ID: M6ASITE049551 Click to Show/Hide the Full List
mod site chr2:201221614-201221615:+ [9]
Sequence TTCACTGACTTTCTTTTCGGACTCAGCCCACCTGCACCCAG
Motif Score 4.065041667
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000360132.7; ENST00000286186.10; rmsk_790741; ENST00000448480.1; ENST00000272879.9
External Link RMBase: m6A_site_506512
mod ID: M6ASITE061390 Click to Show/Hide the Full List
mod site chr3:54634540-54634541:- [8]
Sequence CCTGCACCCAGGTGAAATAAACAGCCTTGTTGCTCACACAA
Motif Score 2.20572619
Cell/Tissue List H1A; H1B
Seq Type List m6A-seq
Transcript ID List ENST00000583516.1; rmsk_969181
External Link RMBase: m6A_site_595231
mod ID: M6ASITE085559 Click to Show/Hide the Full List
mod site chr8:71675329-71675330:+ [8]
Sequence CCTGCACCCAGGTGAAATAAACAGCCATGTTGCTCACACAA
Motif Score 2.20572619
Cell/Tissue List H1A; H1B
Seq Type List m6A-seq
Transcript ID List ENST00000519840.1; rmsk_2546467
External Link RMBase: m6A_site_800349
mod ID: M6ASITE092889 Click to Show/Hide the Full List
mod site chrX:92100602-92100603:- [4]
Sequence CCGGAAGTAACTGAAGAATCACAAAAGAAGTGAATATGCCC
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List rmsk_3062289
External Link RMBase: m6A_site_866704
Pseudouridine (Pseudo)
In total 2 m6A sequence/site(s) in this target gene
mod ID: PSESITE000124 Click to Show/Hide the Full List
mod site chr19:28435443-28435444:- [11]
Sequence CTCCCTTCACTAACTCTCTTTTCGGACTCAGCCTGCCTGCA
Transcript ID List rmsk_4971418; ENST00000592347.5
External Link RMBase: Pseudo_site_2469
mod ID: PSESITE000136 Click to Show/Hide the Full List
mod site chr2:20088031-20088032:+ [11]
Sequence CTCCCTTCACTAACTCTCTTTTCGGACTCAGCCTGCCTGCA
Transcript ID List rmsk_479187
External Link RMBase: Pseudo_site_2563