General Information of the Epigenetic Target (ID: EPITAR00155)
Target Name Zinc finger protein SNAI1 (SNAI1)
Synonyms
Protein snail homolog 1; Protein sna; SNAH
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Gene Name SNAI1
Sequence
MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTASLPMLIWDSVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSVSSLEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQACARTFSRMSLLHKHQESGCSGCPR
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Family Snail C2H2-type zinc-finger protein family
Function
Involved in induction of the epithelial to mesenchymal transition (EMT), formation and maintenance of embryonic mesoderm, growth arrest, survival and cell migration. Binds to 3 E-boxes of the E-cadherin/CDH1 gene promoter and to the promoters of CLDN7 and KRT8 and, in association with histone demethylase KDM1A which it recruits to the promoters, causes a decrease in dimethylated H3K4 levels and represses transcription. The N-terminal SNAG domain competes with histone H3 for the same binding site on the histone demethylase complex formed by KDM1A and RCOR1, and thereby inhibits demethylation of histone H3 at 'Lys-4' (in vitro). During EMT, involved with LOXL2 in negatively regulating pericentromeric heterochromatin transcription (By similarity). SNAI1 recruits LOXL2 to pericentromeric regions to oxidize histone H3 and repress transcription which leads to release of heterochromatin component CBX5/HP1A, enabling chromatin reorganization and acquisition of mesenchymal traits (By similarity). Associates with EGR1 and SP1 to mediate tetradecanoyl phorbol acetate (TPA)-induced up-regulation of CDKN2B, possibly by binding to the CDKN2B promoter region 5'-TCACA-3. In addition, may also activate the CDKN2B promoter by itself.
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Gene ID 6615
HGNC ID HGNC:11128
Ensembl Gene ID ENSG00000124216
KEGG ID hsa:6615
Chromosomal Location 20q13.13
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00155)
Zinc finger protein SNAI1 (SNAI1)
N6-methyladenosine (m6A)
In total 15 m6A sequence/site(s) in this target gene
mod ID: M6ASITE053514 Click to Show/Hide the Full List
mod site chr20:49983129-49983130:+ [1]
Sequence TAACTACAGCGAGCTGCAGGACTCTAATCCAGGTGCGTTGG
Motif Score 4.065041667
Cell/Tissue List HeLa; MT4; iSLK; MSC
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536116
mod ID: M6ASITE053515 Click to Show/Hide the Full List
mod site chr20:49983925-49983926:+ [1]
Sequence GCTGCCAATGCTCATCTGGGACTCTGTCCTGGCGCCCCAAG
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536117
mod ID: M6ASITE053516 Click to Show/Hide the Full List
mod site chr20:49984024-49984025:+ [1]
Sequence GACCTCCCTGTCAGATGAGGACAGTGGGAAAGGCTCCCAGC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; H1A; H1B; Jurkat; peripheral-blood; GSC-11; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536118
mod ID: M6ASITE053517 Click to Show/Hide the Full List
mod site chr20:49987945-49987946:+ [1]
Sequence ACCTGCGGGCCCACCTCCAGACCCACTCAGATGTCAAGAAG
Motif Score 2.876744048
Cell/Tissue List HeLa; endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536119
mod ID: M6ASITE053518 Click to Show/Hide the Full List
mod site chr20:49987990-49987991:+ [1]
Sequence AGTGCCAGGCGTGTGCTCGGACCTTCTCCCGAATGTCCCTG
Motif Score 3.622404762
Cell/Tissue List HeLa; U2OS
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536120
mod ID: M6ASITE053519 Click to Show/Hide the Full List
mod site chr20:49988126-49988127:+ [1]
Sequence CCCCAGCTCCAGCAGGAAGGACCCCACATCCTTCTCACTGC
Motif Score 3.622404762
Cell/Tissue List HeLa; U2OS; hESCs; HEK293A-TOA; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536121
mod ID: M6ASITE053520 Click to Show/Hide the Full List
mod site chr20:49988198-49988199:+ [1]
Sequence GGCCACATCAGCCCCACAGGACTTTGATGAAGACCATTTTC
Motif Score 4.065041667
Cell/Tissue List HeLa; H1A; HEK293A-TOA; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536122
mod ID: M6ASITE053521 Click to Show/Hide the Full List
mod site chr20:49988210-49988211:+ [1]
Sequence CCCACAGGACTTTGATGAAGACCATTTTCTGGTTCTGTGTC
Motif Score 2.876744048
Cell/Tissue List HeLa; H1A; HEK293A-TOA; MSC; TIME; iSLK; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536123
mod ID: M6ASITE053522 Click to Show/Hide the Full List
mod site chr20:49988381-49988382:+ [1]
Sequence CAGCTGCTTTGAGCTACAGGACAAAGGCTGACAGACTCACT
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; HEK293T; A549; hESC-HEK293T; H1A; H1B; hNPCs; hESCs; fibroblasts; MT4; Huh7; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq; m6A-CLIP/IP
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536124
mod ID: M6ASITE053523 Click to Show/Hide the Full List
mod site chr20:49988395-49988396:+ [1]
Sequence TACAGGACAAAGGCTGACAGACTCACTGGGAAGCTCCCACC
Motif Score 3.319380952
Cell/Tissue List HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; fibroblasts; MT4; Huh7; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536125
mod ID: M6ASITE053524 Click to Show/Hide the Full List
mod site chr20:49988427-49988428:+ [1]
Sequence GCTCCCACCCCACTCAGGGGACCCCACTCCCCTCACACACA
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; fibroblasts; MT4; Huh7; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536126
mod ID: M6ASITE053525 Click to Show/Hide the Full List
mod site chr20:49988462-49988463:+ [1]
Sequence CACACACCCCCCCACAAGGAACCCTCAGGCCACCCTCCACG
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; fibroblasts; MT4; MM6; Huh7; Jurkat; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536127
mod ID: M6ASITE053526 Click to Show/Hide the Full List
mod site chr20:49988550-49988551:+ [1]
Sequence GCCTGCGGAGGCGGTGGCAGACTAGAGTCTGAGATGCCCCG
Motif Score 3.319380952
Cell/Tissue List HeLa; HEK293T; A549; H1A; H1B; Jurkat; HEK293A-TOA; iSLK; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536128
mod ID: M6ASITE053527 Click to Show/Hide the Full List
mod site chr20:49988650-49988651:+ [2]
Sequence TTAACAATGTCTGAAAAGGGACTGTGAGTAATGGCTGTCAC
Motif Score 4.065041667
Cell/Tissue List iSLK
Seq Type List MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536129
mod ID: M6ASITE053528 Click to Show/Hide the Full List
mod site chr20:49988722-49988723:+ [2]
Sequence TGACCGATGTGTCTCCCAGAACTATTCTGGGGGCCCGACAG
Motif Score 3.373380952
Cell/Tissue List iSLK
Seq Type List MeRIP-seq
Transcript ID List ENST00000244050.3
External Link RMBase: m6A_site_536130