General Information of the Epigenetic Target (ID: EPITAR00153)
Target Name Transcription factor E2F1 (E2F1)
Synonyms
E2F-1; PBR3; Retinoblastoma-associated protein 1; RBAP-1; Retinoblastoma-binding protein 3; RBBP-3; pRB-binding protein E2F-1; RBBP3
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Gene Name E2F1
Sequence
MALAGAPAGGPCAPALEALLGAGALRLLDSSQIVIISAAQDASAPPAPTGPAAPAAGPCDPDLLLFATPQAPRPTPSAPRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVKSPGEKSRYETSLNLTTKRFLELLSHSADGVVDLNWAAEVLKVQKRRIYDITNVLEGIQLIAKKSKNHIQWLGSHTTVGVGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSENFQISLKSKQGPIDVFLCPEETVGGISPGKTPSQEVTSEEENRATDSATIVSPPPSSPPSSLTTDPSQSLLSLEQEPLLSRMGSLRAPVDEDRLSPLVAADSLLEHVREDFSGLLPEEFISLSPPHEALDYHFGLEEGEGIRDLFDCDFGDLTPLDF
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Family E2F/DP family
Function
Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DRTF1/E2F complex functions in the control of cell-cycle progression from G1 to S phase. E2F1 binds preferentially RB1 in a cell-cycle dependent manner. It can mediate both cell proliferation and TP53/p53-dependent apoptosis. Blocks adipocyte differentiation by binding to specific promoters repressing CEBPA binding to its target gene promoters. Directly activates transcription of PEG10. Positively regulates transcription of RRP1B.
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Gene ID 1869
HGNC ID HGNC:3113
Ensembl Gene ID ENSG00000101412
KEGG ID hsa:1869
Chromosomal Location 20q11.22
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00153)
Transcription factor E2F1 (E2F1)
5-methylcytidine (m5C)
In total 5 m6A sequence/site(s) in this target gene
mod ID: M5CSITE002667 Click to Show/Hide the Full List
mod site chr20:33675915-33675916:-
Sequence AGGGGGCCAGTTCAGGGCCCCAGCTGCCCCCCAGGATGGAT
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m5C_site_28691
mod ID: M5CSITE002668 Click to Show/Hide the Full List
mod site chr20:33675916-33675917:-
Sequence CAGGGGGCCAGTTCAGGGCCCCAGCTGCCCCCCAGGATGGA
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m5C_site_28692
mod ID: M5CSITE002669 Click to Show/Hide the Full List
mod site chr20:33675917-33675918:-
Sequence CCAGGGGGCCAGTTCAGGGCCCCAGCTGCCCCCCAGGATGG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m5C_site_28693
mod ID: M5CSITE002670 Click to Show/Hide the Full List
mod site chr20:33675918-33675919:- [1]
Sequence TCCAGGGGGCCAGTTCAGGGCCCCAGCTGCCCCCCAGGATG
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m5C_site_28694
mod ID: M5CSITE002671 Click to Show/Hide the Full List
mod site chr20:33675928-33675929:- [1]
Sequence GTGGGCCCTCTCCAGGGGGCCAGTTCAGGGCCCCAGCTGCC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m5C_site_28695
N6-methyladenosine (m6A)
In total 43 m6A sequence/site(s) in this target gene
mod ID: M6ASITE052199 Click to Show/Hide the Full List
mod site chr20:33675653-33675654:- [2]
Sequence GTTTTGGGACTCTGTTGGGAACATTTCGGGGCGGGAGAGGC
Motif Score 2.951386905
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527693
mod ID: M6ASITE052200 Click to Show/Hide the Full List
mod site chr20:33675665-33675666:- [3]
Sequence CGTTTGGGCCGGGTTTTGGGACTCTGTTGGGAACATTTCGG
Motif Score 4.065041667
Cell/Tissue List HeLa; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527694
mod ID: M6ASITE052201 Click to Show/Hide the Full List
mod site chr20:33675819-33675820:- [3]
Sequence GAAGGCCTCCCCCAGCCCAGACCCTGTGGTCCCTCCTGCAG
Motif Score 2.876744048
Cell/Tissue List HeLa; HEK293T; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527695
mod ID: M6ASITE052202 Click to Show/Hide the Full List
mod site chr20:33675869-33675870:- [3]
Sequence ATGGGAGAGGTGAGTGGGGGACCTTCACTGATGTGGGCAGG
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; H1B; MT4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527696
mod ID: M6ASITE052203 Click to Show/Hide the Full List
mod site chr20:33675974-33675975:- [4]
Sequence GGAGGGAGACAGACTGACTGACAGCCATGGGTGGTCAGATG
Motif Score 2.859755952
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527697
mod ID: M6ASITE052204 Click to Show/Hide the Full List
mod site chr20:33675978-33675979:- [4]
Sequence TGAGGGAGGGAGACAGACTGACTGACAGCCATGGGTGGTCA
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527698
mod ID: M6ASITE052205 Click to Show/Hide the Full List
mod site chr20:33675982-33675983:- [3]
Sequence AAAGTGAGGGAGGGAGACAGACTGACTGACAGCCATGGGTG
Motif Score 3.319380952
Cell/Tissue List HeLa; A549; MT4; Huh7
Seq Type List m6A-seq; m6A-CLIP/IP; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527699
mod ID: M6ASITE052206 Click to Show/Hide the Full List
mod site chr20:33675986-33675987:- [3]
Sequence TGGGAAAGTGAGGGAGGGAGACAGACTGACTGACAGCCATG
Motif Score 2.897386905
Cell/Tissue List HeLa; HEK293T; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527700
mod ID: M6ASITE052207 Click to Show/Hide the Full List
mod site chr20:33676031-33676032:- [3]
Sequence TTCTGCCCCATACTGAAGGAACTGAGGCCTGGGTGATTTAT
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; A549; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527701
mod ID: M6ASITE052208 Click to Show/Hide the Full List
mod site chr20:33676040-33676041:- [4]
Sequence GAGCTGTTCTTCTGCCCCATACTGAAGGAACTGAGGCCTGG
Motif Score 2.53247619
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527702
mod ID: M6ASITE052209 Click to Show/Hide the Full List
mod site chr20:33676228-33676229:- [4]
Sequence TGGCTGGCTGGGCGTGTAGGACGGTGAGAGCACTTCTGTCT
Motif Score 3.616982143
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527703
mod ID: M6ASITE052210 Click to Show/Hide the Full List
mod site chr20:33676270-33676271:- [4]
Sequence TCCCAGAATCTGGTGCTCTGACCAGGCCAGGTGGGGAGGCT
Motif Score 2.839113095
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527704
mod ID: M6ASITE052211 Click to Show/Hide the Full List
mod site chr20:33676347-33676348:- [4]
Sequence GTGCGCGTGGGGGGGCTCTAACTGCACTTTCGGCCCTTTTG
Motif Score 2.590089286
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527705
mod ID: M6ASITE052212 Click to Show/Hide the Full List
mod site chr20:33676436-33676437:- [4]
Sequence GTACCGGGGAATGAAGGTGAACATACACCTCTGTGTGTGCA
Motif Score 2.951386905
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527706
mod ID: M6ASITE052213 Click to Show/Hide the Full List
mod site chr20:33676503-33676504:- [5]
Sequence TGTGCATGCAGCCTACACCCACACGTGTGTACCGGGGGTGA
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527707
mod ID: M6ASITE052214 Click to Show/Hide the Full List
mod site chr20:33676509-33676510:- [5]
Sequence TGTGTATGTGCATGCAGCCTACACCCACACGTGTGTACCGG
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527708
mod ID: M6ASITE052215 Click to Show/Hide the Full List
mod site chr20:33676575-33676576:- [4]
Sequence TCTAGCTCTGGGGTCTGGCTACCGCTAGGAGGCTGAGCAAG
Motif Score 2.05802381
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527709
mod ID: M6ASITE052216 Click to Show/Hide the Full List
mod site chr20:33676634-33676635:- [6]
Sequence TCCTCCCAGCCTGTTTGGAAACATTTAATTTATACCCCTCT
Motif Score 2.20572619
Cell/Tissue List HepG2; HEK293T; HeLa; A549; U2OS; H1A; H1B; GM12878; H1299; MM6; Jurkat; HEK293A-TOA; iSLK; MSC; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527710
mod ID: M6ASITE052217 Click to Show/Hide the Full List
mod site chr20:33676716-33676717:- [3]
Sequence TTCTGACAGGGCTTGGAGGGACCAGGGTTTCCAGAGATGCT
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hESCs; GM12878; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527711
mod ID: M6ASITE052218 Click to Show/Hide the Full List
mod site chr20:33676753-33676754:- [3]
Sequence CTTCGACTGTGACTTTGGGGACCTCACCCCCCTGGATTTCT
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hESCs; GM12878; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527712
mod ID: M6ASITE052219 Click to Show/Hide the Full List
mod site chr20:33676768-33676769:- [4]
Sequence GGGCATCAGAGACCTCTTCGACTGTGACTTTGGGGACCTCA
Motif Score 3.287565476
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527713
mod ID: M6ASITE052220 Click to Show/Hide the Full List
mod site chr20:33676777-33676778:- [3]
Sequence GGAGGGCGAGGGCATCAGAGACCTCTTCGACTGTGACTTTG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hNPCs; hESCs; GM12878; H1299; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527714
mod ID: M6ASITE052221 Click to Show/Hide the Full List
mod site chr20:33676816-33676817:- [4]
Sequence CCCACCCCACGAGGCCCTCGACTACCACTTCGGCCTCGAGG
Motif Score 3.287565476
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527715
mod ID: M6ASITE052222 Click to Show/Hide the Full List
mod site chr20:33676876-33676877:- [3]
Sequence CCTGGAGCATGTGCGGGAGGACTTCTCCGGCCTCCTCCCTG
Motif Score 4.065041667
Cell/Tissue List HeLa; HepG2; HEK293T; A549; U2OS; H1A; H1B; hESCs; H1299; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527716
mod ID: M6ASITE052223 Click to Show/Hide the Full List
mod site chr20:33676930-33676931:- [3]
Sequence GCGGGCTCCCGTGGACGAGGACCGCCTGTCCCCGCTGGTGG
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; HEK293T; A549; MM6; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527717
mod ID: M6ASITE052224 Click to Show/Hide the Full List
mod site chr20:33677205-33677206:- [3]
Sequence GGTCACTTCTGAGGAGGAGAACAGGGCCACTGACTCTGCCA
Motif Score 2.951386905
Cell/Tissue List HeLa; MT4; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527718
mod ID: M6ASITE052225 Click to Show/Hide the Full List
mod site chr20:33677239-33677240:- [3]
Sequence GTGGGATCAGCCCTGGGAAGACCCCATCCCAGGAGGTCACT
Motif Score 2.876744048
Cell/Tissue List HeLa; MT4; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527719
mod ID: M6ASITE052226 Click to Show/Hide the Full List
mod site chr20:33677266-33677267:- [7]
Sequence TTTTCCTGTGCCCTGAGGAGACCGTAGGTGGGATCAGCCCT
Motif Score 2.876744048
Cell/Tissue List HeLa; MT4; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527720
mod ID: M6ASITE052227 Click to Show/Hide the Full List
mod site chr20:33677303-33677304:- [5]
Sequence CAGATCTCCCTTAAGAGCAAACAAGGCCCGATCGATGTTTT
Motif Score 2.20572619
Cell/Tissue List hESC-HEK293T; HEK293A-TOA
Seq Type List MAZTER-seq; m6A-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527721
mod ID: M6ASITE052228 Click to Show/Hide the Full List
mod site chr20:33677498-33677499:- [8]
Sequence GGACCTTCGTAGCATTGCAGACCCTGCAGAGCAGATGGTTA
Motif Score 2.876744048
Cell/Tissue List peripheral-blood
Seq Type List m6A-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527722
mod ID: M6ASITE052229 Click to Show/Hide the Full List
mod site chr20:33677516-33677517:- [8]
Sequence GGCCTACGTGACGTGTCAGGACCTTCGTAGCATTGCAGACC
Motif Score 3.622404762
Cell/Tissue List peripheral-blood
Seq Type List m6A-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527723
mod ID: M6ASITE052230 Click to Show/Hide the Full List
mod site chr20:33678215-33678216:- [3]
Sequence GCTGCGCCTGCTCTCCGAGGACACTGACAGCCAGCGATATC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; hESC-HEK293T; CD4T; peripheral-blood; GSC-11; HEC-1-A
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527724
mod ID: M6ASITE052231 Click to Show/Hide the Full List
mod site chr20:33678243-33678244:- [4]
Sequence ACCACCTGATGAATATCTGTACTACGCAGCTGCGCCTGCTC
Motif Score 3.278136905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527725
mod ID: M6ASITE052232 Click to Show/Hide the Full List
mod site chr20:33678263-33678264:- [3]
Sequence GGAGAGCGAGCAGCAGCTGGACCACCTGATGAATATCTGTA
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; CD4T; peripheral-blood; GSC-11; HEK293T; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527726
mod ID: M6ASITE052233 Click to Show/Hide the Full List
mod site chr20:33678299-33678300:- [3]
Sequence GCTTGAGGGGTTGACCCAGGACCTCCGACAGCTGCAGGAGA
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; CD4T; peripheral-blood; GSC-11; HEK293T; endometrial; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527727
mod ID: M6ASITE052234 Click to Show/Hide the Full List
mod site chr20:33679766-33679767:- [9]
Sequence TGCCAAGAAGTCCAAGAACCACATCCAGTGGCTGTAGGTAC
Motif Score 2.053113095
Cell/Tissue List HEK293; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527728
mod ID: M6ASITE052235 Click to Show/Hide the Full List
mod site chr20:33679769-33679770:- [3]
Sequence CATTGCCAAGAAGTCCAAGAACCACATCCAGTGGCTGTAGG
Motif Score 2.930744048
Cell/Tissue List HeLa; HepG2; peripheral-blood; HEK293T; HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527729
mod ID: M6ASITE052236 Click to Show/Hide the Full List
mod site chr20:33679820-33679821:- [5]
Sequence GCAGAAGCGGCGCATCTATGACATCACCAACGTCCTTGAGG
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527730
mod ID: M6ASITE052237 Click to Show/Hide the Full List
mod site chr20:33679865-33679866:- [3]
Sequence TGACGGTGTCGTCGACCTGAACTGGGCTGCCGAGGTGCTGA
Motif Score 3.373380952
Cell/Tissue List HeLa; peripheral-blood
Seq Type List m6A-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527731
mod ID: M6ASITE052238 Click to Show/Hide the Full List
mod site chr20:33679938-33679939:- [3]
Sequence GGGAGAAGTCACGCTATGAGACCTCACTGAATCTGACCACC
Motif Score 2.876744048
Cell/Tissue List HeLa; peripheral-blood
Seq Type List m6A-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527732
mod ID: M6ASITE052239 Click to Show/Hide the Full List
mod site chr20:33680391-33680392:- [3]
Sequence AGCGGAGGCTGGACCTGGAAACTGACCATCAGTACCTGGCC
Motif Score 2.627720238
Cell/Tissue List HeLa; MT4; MM6; HEK293T
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527733
mod ID: M6ASITE052240 Click to Show/Hide the Full List
mod site chr20:33680399-33680400:- [3]
Sequence ACAGGTGAAGCGGAGGCTGGACCTGGAAACTGACCATCAGT
Motif Score 3.622404762
Cell/Tissue List HeLa; MT4; MM6; HEK293T
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527734
mod ID: M6ASITE052241 Click to Show/Hide the Full List
mod site chr20:33686381-33686382:- [10]
Sequence GGCGCGTAAAAGTGGCCGGGACTTTGCAGGCAGCGGCGGCC
Motif Score 4.065041667
Cell/Tissue List A549; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000343380.6
External Link RMBase: m6A_site_527735