General Information of the Epigenetic Target (ID: EPITAR00152)
Target Name Homeobox protein NANOG (NANOG)
Synonyms
Homeobox transcription factor Nanog; hNanog
    Click to Show/Hide
Gene Name NANOG
Sequence
MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNMQPEDV
    Click to Show/Hide
Family Nanog homeobox family
Function
Transcription regulator involved in inner cell mass and embryonic stem (ES) cells proliferation and self-renewal. Imposes pluripotency on ES cells and prevents their differentiation towards extraembryonic endoderm and trophectoderm lineages. Blocks bone morphogenetic protein-induced mesoderm differentiation of ES cells by physically interacting with SMAD1 and interfering with the recruitment of coactivators to the active SMAD transcriptional complexes. Acts as a transcriptional activator or repressor. Binds optimally to the DNA consensus sequence 5'-TAAT[GT][GT]-3' or 5'-[CG][GA][CG]C[GC]ATTAN[GC]-3'. Binds to the POU5F1/OCT4 promoter. Able to autorepress its expression in differentiating (ES) cells: binds to its own promoter following interaction with ZNF281/ZFP281, leading to recruitment of the NuRD complex and subsequent repression of expression. When overexpressed, promotes cells to enter into S phase and proliferation.
    Click to Show/Hide
Gene ID 79923
HGNC ID HGNC:20857
Ensembl Gene ID ENSG00000111704
KEGG ID hsa:79923
Chromosomal Location 12p13.31
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00152)
Homeobox protein NANOG (NANOG)
N6-methyladenosine (m6A)
In total 14 m6A sequence/site(s) in this target gene
mod ID: M6ASITE010628 Click to Show/Hide the Full List
mod site chr12:7789413-7789414:+ [1]
Sequence CCTTCATTATAAATCTAGAGACTCCAGGATTTTAACGTTCT
Motif Score 3.319380952
Cell/Tissue List fibroblasts
Seq Type List m6A-seq
Transcript ID List ENST00000229307.9; ENST00000541267.5
External Link RMBase: m6A_site_176019
mod ID: M6ASITE010629 Click to Show/Hide the Full List
mod site chr12:7789439-7789440:+ [1]
Sequence GGATTTTAACGTTCTGCTGGACTGAGCTGGTTGCCTCATGT
Motif Score 4.065041667
Cell/Tissue List fibroblasts
Seq Type List m6A-seq
Transcript ID List ENST00000526434.2; ENST00000229307.9; ENST00000541267.5
External Link RMBase: m6A_site_176020
mod ID: M6ASITE010630 Click to Show/Hide the Full List
mod site chr12:7789528-7789529:+ [2]
Sequence CTGGAGGTCCTATTTCTCTAACATCTTCCAGAAAAGTCTTA
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000229307.9; ENST00000526434.2; ENST00000541267.5
External Link RMBase: m6A_site_176021
mod ID: M6ASITE010631 Click to Show/Hide the Full List
mod site chr12:7789612-7789613:+ [2]
Sequence CCTCCTCTTCCTCTATACTAACATGAGTGTGGATCCAGCTT
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000541267.5; ENST00000526434.2; ENST00000229307.9
External Link RMBase: m6A_site_176022
mod ID: M6ASITE010632 Click to Show/Hide the Full List
mod site chr12:7789753-7789754:+ [2]
Sequence GTCTTCTGCTGAGATGCCTCACACGGAGACTGGTAAGAAAG
Motif Score 2.047297619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000526286.1; ENST00000526434.2; ENST00000541267.5; ENST00000229307.9
External Link RMBase: m6A_site_176023
mod ID: M6ASITE010633 Click to Show/Hide the Full List
mod site chr12:7795014-7795015:+ [1]
Sequence GCCTTAATGTAATACAGCAGACCACTAGGTATTTTAGTACT
Motif Score 2.876744048
Cell/Tissue List fibroblasts
Seq Type List m6A-seq
Transcript ID List ENST00000229307.9; ENST00000526286.1
External Link RMBase: m6A_site_176024
mod ID: M6ASITE010634 Click to Show/Hide the Full List
mod site chr12:7795041-7795042:+ [1]
Sequence GGTATTTTAGTACTCCACAAACCATGGATTTATTCCTAAAC
Motif Score 2.185083333
Cell/Tissue List fibroblasts
Seq Type List m6A-seq
Transcript ID List ENST00000229307.9; ENST00000526286.1
External Link RMBase: m6A_site_176025
mod ID: M6ASITE010635 Click to Show/Hide the Full List
mod site chr12:7795060-7795061:+ [1]
Sequence AACCATGGATTTATTCCTAAACTACTCCATGAACATGCAAC
Motif Score 2.627720238
Cell/Tissue List fibroblasts
Seq Type List m6A-seq
Transcript ID List ENST00000229307.9; ENST00000526286.1
External Link RMBase: m6A_site_176026
mod ID: M6ASITE010636 Click to Show/Hide the Full List
mod site chr12:7795072-7795073:+ [2]
Sequence ATTCCTAAACTACTCCATGAACATGCAACCTGAAGACGTGT
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T; fibroblasts
Seq Type List MAZTER-seq; m6A-seq
Transcript ID List ENST00000526286.1; ENST00000229307.9
External Link RMBase: m6A_site_176027
mod ID: M6ASITE010637 Click to Show/Hide the Full List
mod site chr12:7795106-7795107:+ [1]
Sequence GACGTGTGAAGATGAGTGAAACTGATATTACTCAATTTCAG
Motif Score 2.627720238
Cell/Tissue List hESCs; fibroblasts
Seq Type List m6A-seq
Transcript ID List ENST00000229307.9
External Link RMBase: m6A_site_176028
mod ID: M6ASITE010638 Click to Show/Hide the Full List
mod site chr12:7795132-7795133:+ [2]
Sequence ATTACTCAATTTCAGTCTGGACACTGGCTGAATCCTTCCTC
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T; hESCs; fibroblasts
Seq Type List MAZTER-seq; m6A-seq
Transcript ID List ENST00000229307.9
External Link RMBase: m6A_site_176029
mod ID: M6ASITE010639 Click to Show/Hide the Full List
mod site chr12:7795194-7795195:+ [1]
Sequence AGGATTTTTCTTGTTTGGAAACCACGTGTTCTGGTTTCCAT
Motif Score 2.185083333
Cell/Tissue List hESCs
Seq Type List m6A-seq
Transcript ID List ENST00000229307.9
External Link RMBase: m6A_site_176030
mod ID: M6ASITE010640 Click to Show/Hide the Full List
mod site chr12:7795629-7795630:+ [1]
Sequence CCGCGCCCTGCCTAGAAAAGACATTTTAATAACCTTGGCTG
Motif Score 2.897386905
Cell/Tissue List hESCs
Seq Type List m6A-seq
Transcript ID List ENST00000229307.9
External Link RMBase: m6A_site_176031
mod ID: M6ASITE010641 Click to Show/Hide the Full List
mod site chr12:7795732-7795733:+ [2]
Sequence TAACCTCAAGAATAAGAAATACAAGTACAAATTGGTGATGA
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000229307.9
External Link RMBase: m6A_site_176032