Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00121)
Target Name G1/S-specific cyclin-E1 (CCNE1)
Synonyms
CCNE
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Gene Name CCNE1
Sequence
MPRERRERDAKERDTMKEDGGAEFSARSRKRKANVTVFLQDPDEEMAKIDRTARDQCGSQPWDNNAVCADPCSLIPTPDKEDDDRVYPNSTCKPRIIAPSRGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADEDAHNIQTHRDSLDLLDKARAKKAMLSEQNRASPLPSGLLTPPQSGKKQSSGPEMA
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Family Cyclin family; Cyclin E subfamily
Function
Essential for the control of the cell cycle at the G1/S (start) transition.
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Gene ID 898
HGNC ID HGNC:1589
Ensembl Gene ID ENSG00000105173
KEGG ID hsa:898
Chromosomal Location 19q12
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00121)
G1/S-specific cyclin-E1 (CCNE1)
N4-acetylcytidine (ac4C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: AC4SITE000256 Click to Show/Hide the Full List
mod site chr19:29813003-29813004:+ [1]
Sequence GATGAAGAAATGGCCAAAATCGACAGGACGGCGAGGGACCA
Cell/Tissue List H1
Seq Type List ac4C-seq
Transcript ID List ENST00000262643.8; ENST00000444983.6; ENST00000586912.1; ENST00000575243.5; ENST00000357943.9
External Link RMBase: ac4C_site_988
5-methylcytidine (m5C)
In total 1 m6A sequence/site(s) in this target gene
mod ID: M5CSITE001881 Click to Show/Hide the Full List
mod site chr19:29811999-29812000:+ [2]
Sequence GAGCCGGGCGCAGGAGCAGCCGGCGCGGCCGCCAGCGCGGT
Seq Type List Bisulfite-seq
Transcript ID List ENST00000262643.8
External Link RMBase: m5C_site_23849
N6-methyladenosine (m6A)
In total 39 m6A sequence/site(s) in this target gene
mod ID: M6ASITE040757 Click to Show/Hide the Full List
mod site chr19:29812117-29812118:+ [3]
Sequence CGCCGCCGCCGCCTGCCGGGACTGGAGCGCGCCGTCCGCCG
Motif Score 4.065041667
Cell/Tissue List HeLa; A549; U2OS; GSC-11; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List rmsk_4974009; ENST00000262643.8; ENST00000575243.5
External Link RMBase: m6A_site_432392
mod ID: M6ASITE040758 Click to Show/Hide the Full List
mod site chr19:29812141-29812142:+ [3]
Sequence GAGCGCGCCGTCCGCCGCGGACAAGACCCTGGTGAGTCTAC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; A549; hESC-HEK293T; U2OS; CD4T; GSC-11; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000262643.8; ENST00000575243.5
External Link RMBase: m6A_site_432393
mod ID: M6ASITE040759 Click to Show/Hide the Full List
mod site chr19:29812146-29812147:+ [3]
Sequence CGCCGTCCGCCGCGGACAAGACCCTGGTGAGTCTACTGCCG
Motif Score 2.876744048
Cell/Tissue List HeLa; HepG2; A549; U2OS; CD4T; GSC-11; HEK293T; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000575243.5; ENST00000262643.8
External Link RMBase: m6A_site_432394
mod ID: M6ASITE040760 Click to Show/Hide the Full List
mod site chr19:29812705-29812706:+ [3]
Sequence CAGGGATGCGAAGGAGCGGGACACCATGAAGGAGGACGGCG
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; A549; hESC-HEK293T; U2OS; MT4; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List ENST00000444983.6; ENST00000262643.8; ENST00000357943.9; ENST00000575243.5
External Link RMBase: m6A_site_432395
mod ID: M6ASITE040761 Click to Show/Hide the Full List
mod site chr19:29813020-29813021:+ [3]
Sequence AATCGACAGGACGGCGAGGGACCAGTGTGGGAGCCAGGTAG
Motif Score 3.622404762
Cell/Tissue List HeLa; HepG2; U2OS; MM6; Jurkat; peripheral-blood; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000262643.8; ENST00000586912.1; ENST00000357943.9; ENST00000444983.6; ENST00000575243.5
External Link RMBase: m6A_site_432396
mod ID: M6ASITE040762 Click to Show/Hide the Full List
mod site chr19:29817143-29817144:+ [4]
Sequence TTTTCATTTACAGCCTTGGGACAATAATGCAGTCTGTGCAG
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000262643.8; ENST00000575243.5; ENST00000357943.9; ENST00000444983.6
External Link RMBase: m6A_site_432397
mod ID: M6ASITE040763 Click to Show/Hide the Full List
mod site chr19:29817184-29817185:+ [4]
Sequence ACCCCTGCTCCCTGATCCCCACACCTGACAAAGAAGATGAT
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000575243.5; ENST00000357943.9; ENST00000444983.6; ENST00000262643.8
External Link RMBase: m6A_site_432398
mod ID: M6ASITE040764 Click to Show/Hide the Full List
mod site chr19:29817191-29817192:+ [4]
Sequence CTCCCTGATCCCCACACCTGACAAAGAAGATGATGACCGGG
Motif Score 2.859755952
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000575243.5; ENST00000262643.8; ENST00000357943.9; ENST00000444983.6
External Link RMBase: m6A_site_432399
mod ID: M6ASITE040765 Click to Show/Hide the Full List
mod site chr19:29817443-29817444:+ [3]
Sequence AGTCTGGAAAATCATGTTAAACAAGGAAAAGACATACTTAA
Motif Score 2.20572619
Cell/Tissue List HeLa; hESC-HEK293T
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000262643.8; ENST00000444983.6; ENST00000357943.9; ENST00000576532.1; ENST00000575243.5
External Link RMBase: m6A_site_432400
mod ID: M6ASITE040766 Click to Show/Hide the Full List
mod site chr19:29817454-29817455:+ [3]
Sequence TCATGTTAAACAAGGAAAAGACATACTTAAGGGATCAGCAC
Motif Score 2.897386905
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000575243.5; ENST00000576532.1; ENST00000357943.9; ENST00000262643.8; ENST00000444983.6
External Link RMBase: m6A_site_432401
mod ID: M6ASITE040767 Click to Show/Hide the Full List
mod site chr19:29817486-29817487:+ [4]
Sequence GATCAGCACTTTCTTGAGCAACACCCTCTTCTGCAGCCAAA
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000444983.6; ENST00000576532.1; ENST00000575243.5; ENST00000262643.8; ENST00000357943.9
External Link RMBase: m6A_site_432402
mod ID: M6ASITE040768 Click to Show/Hide the Full List
mod site chr19:29820718-29820719:+ [3]
Sequence CAGGTGTGTGAAGTCTATAAACTTCACAGGGAGACCTTTTA
Motif Score 2.627720238
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000576532.1; ENST00000575243.5; ENST00000262643.8; ENST00000444983.6; ENST00000357943.9
External Link RMBase: m6A_site_432403
mod ID: M6ASITE040769 Click to Show/Hide the Full List
mod site chr19:29820775-29820776:+ [5]
Sequence TTTGACCGGTATATGGCGACACAAGAAAATGTTGTAAAAAC
Motif Score 2.084928571
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000444983.6; ENST00000575243.5; ENST00000262643.8; ENST00000576532.1; ENST00000357943.9
External Link RMBase: m6A_site_432404
mod ID: M6ASITE040770 Click to Show/Hide the Full List
mod site chr19:29820794-29820795:+ [3]
Sequence CACAAGAAAATGTTGTAAAAACTCTTTTACAGCTTATTGGG
Motif Score 2.627720238
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000357943.9; ENST00000444983.6; ENST00000575243.5; ENST00000576532.1; ENST00000262643.8
External Link RMBase: m6A_site_432405
mod ID: M6ASITE040771 Click to Show/Hide the Full List
mod site chr19:29820841-29820842:+ [3]
Sequence TCTTTATTTATTGCAGCCAAACTTGAGGTAAATAATTTTCA
Motif Score 2.627720238
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000444983.6; ENST00000575243.5; ENST00000262643.8; ENST00000357943.9; ENST00000576532.1
External Link RMBase: m6A_site_432406
mod ID: M6ASITE040772 Click to Show/Hide the Full List
mod site chr19:29822047-29822048:+ [4]
Sequence TGTGTCCTGGCTGAATGTATACATGCAGGTTGCATATCTAA
Motif Score 2.110482143
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000574121.1; ENST00000576532.1; ENST00000444983.6; ENST00000357943.9; ENST00000262643.8
External Link RMBase: m6A_site_432407
mod ID: M6ASITE040773 Click to Show/Hide the Full List
mod site chr19:29822075-29822076:+ [4]
Sequence GTTGCATATCTAAATGACTTACATGAAGTGCTACTGCCGCA
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000262643.8; ENST00000576532.1; ENST00000444983.6; ENST00000357943.9; ENST00000574121.1
External Link RMBase: m6A_site_432408
mod ID: M6ASITE040774 Click to Show/Hide the Full List
mod site chr19:29822267-29822268:+ [5]
Sequence TCTCTGTGTCCTGGATGTTGACTGCCTTGAATTTCCTTATG
Motif Score 3.28175
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000444983.6; ENST00000262643.8; ENST00000576532.1; ENST00000574121.1; ENST00000357943.9
External Link RMBase: m6A_site_432409
mod ID: M6ASITE040775 Click to Show/Hide the Full List
mod site chr19:29822460-29822461:+ [4]
Sequence TGCAGGGTATCAGTGGTGCGACATAGAGAACTGTGTCAAGT
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000576532.1; ENST00000262643.8; ENST00000574121.1; ENST00000444983.6; ENST00000357943.9
External Link RMBase: m6A_site_432410
mod ID: M6ASITE040776 Click to Show/Hide the Full List
mod site chr19:29822469-29822470:+ [3]
Sequence TCAGTGGTGCGACATAGAGAACTGTGTCAAGTGGATGGTTC
Motif Score 3.373380952
Cell/Tissue List HeLa; MT4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000574121.1; ENST00000576532.1; ENST00000262643.8; ENST00000357943.9; ENST00000444983.6
External Link RMBase: m6A_site_432411
mod ID: M6ASITE040777 Click to Show/Hide the Full List
mod site chr19:29822527-29822528:+ [3]
Sequence AGGGAGACGGGGAGCTCAAAACTGAAGCACTTCAGGGGCGT
Motif Score 2.627720238
Cell/Tissue List HeLa; MT4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000574121.1; ENST00000357943.9; ENST00000444983.6; ENST00000262643.8; ENST00000576532.1
External Link RMBase: m6A_site_432412
mod ID: M6ASITE040778 Click to Show/Hide the Full List
mod site chr19:29822563-29822564:+ [4]
Sequence GGCGTCGCTGATGAAGATGCACACAACATACAGACCCACAG
Motif Score 2.830589286
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000444983.6; ENST00000357943.9; ENST00000574121.1; ENST00000576532.1; ENST00000262643.8
External Link RMBase: m6A_site_432413
mod ID: M6ASITE040779 Click to Show/Hide the Full List
mod site chr19:29822576-29822577:+ [3]
Sequence AAGATGCACACAACATACAGACCCACAGAGACAGCTTGGAT
Motif Score 2.876744048
Cell/Tissue List HeLa; MT4; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000357943.9; ENST00000444983.6; ENST00000576532.1; ENST00000262643.8; ENST00000574121.1
External Link RMBase: m6A_site_432414
mod ID: M6ASITE040780 Click to Show/Hide the Full List
mod site chr19:29822586-29822587:+ [3]
Sequence CAACATACAGACCCACAGAGACAGCTTGGATTTGCTGGTCA
Motif Score 2.897386905
Cell/Tissue List HeLa; MT4; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000444983.6; ENST00000576532.1; ENST00000357943.9; ENST00000262643.8; ENST00000574121.1
External Link RMBase: m6A_site_432415
mod ID: M6ASITE040781 Click to Show/Hide the Full List
mod site chr19:29823689-29823690:+ [4]
Sequence AAGAAAGCCATGTTGTCTGAACAAAATAGGGCTTCTCCTCT
Motif Score 2.951386905
Cell/Tissue List hESC-HEK293T; MT4; A549; Huh7
Seq Type List MAZTER-seq; MeRIP-seq; m6A-seq
Transcript ID List ENST00000357943.9; ENST00000576532.1; ENST00000574121.1; ENST00000262643.8; ENST00000444983.6
External Link RMBase: m6A_site_432416
mod ID: M6ASITE040782 Click to Show/Hide the Full List
mod site chr19:29823734-29823735:+ [5]
Sequence AGTGGGCTCCTCACCCCGCCACAGAGCGGTAAGAAGCAGAG
Motif Score 2.053113095
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000576532.1; ENST00000574121.1; ENST00000262643.8; ENST00000444983.6; ENST00000357943.9
External Link RMBase: m6A_site_432417
mod ID: M6ASITE040783 Click to Show/Hide the Full List
mod site chr19:29823801-29823802:+ [6]
Sequence CCCATCCTTCTCCACCAAAGACAGTTGCGCGCCTGCTCCAC
Motif Score 2.897386905
Cell/Tissue List A549; MT4; MM6; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000574121.1; ENST00000576532.1; ENST00000444983.6; ENST00000262643.8; ENST00000357943.9
External Link RMBase: m6A_site_432418
mod ID: M6ASITE040784 Click to Show/Hide the Full List
mod site chr19:29823864-29823865:+ [5]
Sequence GGAGGCGTGCGTTTGCTTTTACAGATATCTGAATGGAAGAG
Motif Score 2.07285119
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000357943.9; ENST00000444983.6; ENST00000262643.8; ENST00000574121.1; ENST00000576532.1
External Link RMBase: m6A_site_432419
mod ID: M6ASITE040785 Click to Show/Hide the Full List
mod site chr19:29823898-29823899:+ [5]
Sequence GGAAGAGTGTTTCTTCCACAACAGAAGTATTTCTGTGGATG
Motif Score 2.173910714
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000576532.1; ENST00000574121.1; ENST00000357943.9; ENST00000444983.6; ENST00000262643.8
External Link RMBase: m6A_site_432420
mod ID: M6ASITE040786 Click to Show/Hide the Full List
mod site chr19:29823986-29823987:+ [4]
Sequence TTTAAATAAGTGGGTCAAGTACACCAGCCACCTCCAGACAC
Motif Score 2.856142857
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000262643.8; ENST00000444983.6; ENST00000574121.1; ENST00000576532.1; ENST00000357943.9
External Link RMBase: m6A_site_432421
mod ID: M6ASITE040787 Click to Show/Hide the Full List
mod site chr19:29824003-29824004:+ [3]
Sequence AGTACACCAGCCACCTCCAGACACCAGTGCGTGCTCCCGAT
Motif Score 2.897386905
Cell/Tissue List HeLa; hESC-HEK293T; H1B; hESCs; A549; HEC-1-A
Seq Type List m6A-seq; MAZTER-seq
Transcript ID List ENST00000357943.9; ENST00000444983.6; ENST00000262643.8; ENST00000576532.1; ENST00000574121.1
External Link RMBase: m6A_site_432422
mod ID: M6ASITE040788 Click to Show/Hide the Full List
mod site chr19:29824042-29824043:+ [5]
Sequence ATGCTGCTATGGAAGGTGCTACTTGACCTAAGGGACTCCCA
Motif Score 2.500660714
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000262643.8; ENST00000574121.1; ENST00000357943.9; ENST00000444983.6
External Link RMBase: m6A_site_432423
mod ID: M6ASITE040789 Click to Show/Hide the Full List
mod site chr19:29824056-29824057:+ [3]
Sequence GGTGCTACTTGACCTAAGGGACTCCCACAACAACAAAAGCT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; H1B; hESCs; A549; TIME; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000357943.9; ENST00000444983.6; ENST00000574121.1; ENST00000262643.8
External Link RMBase: m6A_site_432424
mod ID: M6ASITE040790 Click to Show/Hide the Full List
mod site chr19:29824062-29824063:+ [4]
Sequence ACTTGACCTAAGGGACTCCCACAACAACAAAAGCTTGAAGC
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000357943.9; ENST00000574121.1; ENST00000262643.8; ENST00000444983.6
External Link RMBase: m6A_site_432425
mod ID: M6ASITE040791 Click to Show/Hide the Full List
mod site chr19:29824068-29824069:+ [4]
Sequence CCTAAGGGACTCCCACAACAACAAAAGCTTGAAGCTGTGGA
Motif Score 2.173910714
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000574121.1; ENST00000444983.6; ENST00000262643.8; ENST00000357943.9
External Link RMBase: m6A_site_432426
mod ID: M6ASITE040792 Click to Show/Hide the Full List
mod site chr19:29824137-29824138:+ [5]
Sequence GGTGTTCTGGGCTCCGTTGTACCAAGTGGAGCAGGTGGTTG
Motif Score 2.8355
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000357943.9; ENST00000262643.8; ENST00000444983.6; ENST00000574121.1
External Link RMBase: m6A_site_432427
mod ID: M6ASITE040793 Click to Show/Hide the Full List
mod site chr19:29824212-29824213:+ [4]
Sequence GGCAGGGGGCTGCCCTCTCCACATTATCAGTTGACAGTGTA
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000574121.1; ENST00000262643.8; ENST00000357943.9
External Link RMBase: m6A_site_432428
mod ID: M6ASITE040794 Click to Show/Hide the Full List
mod site chr19:29824248-29824249:+ [3]
Sequence GTGTACAATGCCTTTGATGAACTGTTTTGTAAGTGCTGCTA
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000357943.9; ENST00000262643.8; ENST00000574121.1
External Link RMBase: m6A_site_432429
mod ID: M6ASITE040795 Click to Show/Hide the Full List
mod site chr19:29824309-29824310:+ [3]
Sequence AAGATAATACTGTTTTTGAGACAGCTGGTTTTATGAGCTAT
Motif Score 2.897386905
Cell/Tissue List HeLa; HEK293T
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000262643.8
External Link RMBase: m6A_site_432430