Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00117)

Target Name	Long intergenic non-protein coding RNA 1003 (LINC01003)
Gene Name	LINC01003
Family	Long intergenic non-protein coding RNAs
Gene ID	100128822
HGNC ID	HGNC:48957
Ensembl Gene ID	ENSG00000261455
Chromosomal Location	7q36.1

RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00117)

Long intergenic non-protein coding RNA 1003 (LINC01003)

N6-methyladenosine (m6A)

In total 23 m6A sequence/site(s) in this target gene
mod ID: M6ASITE083510		Click to Show/Hide the Full List
mod site	chr7:152464203-152464204:+		[1]
Sequence	GGGGTGGGGCAGGCCTCGGGACACCTGCCTCCGCCGCCGGC
Motif Score	3.643047619
Cell/Tissue List	HeLa; GSC-11; HEK293A-TOA; TREX
Seq Type List	MeRIP-seq; m6A-seq
Transcript ID List	rmsk_2413394; ENST00000564834.1
External Link	RMBase: m6A_site_784142
mod ID: M6ASITE083511		Click to Show/Hide the Full List
mod site	chr7:152464276-152464277:+		[2]
Sequence	CGGCTCTGCCCCGACCGTAGACTCCCGGCCCGCTCGCCGCG
Motif Score	3.319380952
Cell/Tissue List	HeLa; HEK293T; Jurkat; GSC-11; HEK293A-TOA; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	rmsk_2413394; ENST00000564834.1
External Link	RMBase: m6A_site_784143
mod ID: M6ASITE083512		Click to Show/Hide the Full List
mod site	chr7:152464318-152464319:+		[2]
Sequence	CAGGAGCCGTGGTTCCGCGGACCTGGGCGCGCTCTCTCCCT
Motif Score	3.622404762
Cell/Tissue List	HeLa; HEK293T; A549; Jurkat; GSC-11; HEK293A-TOA; TREX; iSLK; TIME; endometrial
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784144
mod ID: M6ASITE083513		Click to Show/Hide the Full List
mod site	chr7:152464351-152464352:+		[2]
Sequence	CTCTCCCTGGCCACTGGGAGACCCCCCGCGGCCTCGCGGGG
Motif Score	2.876744048
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; LCLs; Jurkat; CD4T; GSC-11; HEK293A-TOA; TREX; iSLK; MSC; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784145
mod ID: M6ASITE083514		Click to Show/Hide the Full List
mod site	chr7:152464375-152464376:+		[2]
Sequence	CCCGCGGCCTCGCGGGGAAAACCTCGGGACTGCCCCGCGCC
Motif Score	2.185083333
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; LCLs; MM6; Jurkat; CD4T; GSC-11; HEK293A-TOA; TREX; iSLK; MSC; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784146
mod ID: M6ASITE083515		Click to Show/Hide the Full List
mod site	chr7:152464383-152464384:+		[2]
Sequence	CTCGCGGGGAAAACCTCGGGACTGCCCCGCGCCCCCGGCCG
Motif Score	4.065041667
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; LCLs; MM6; Jurkat; CD4T; GSC-11; HEK293A-TOA; TREX; iSLK; MSC; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784147
mod ID: M6ASITE083516		Click to Show/Hide the Full List
mod site	chr7:152464438-152464439:+		[2]
Sequence	CTTCTCGCCCGCGACCGTGGACTCGTCCTCGCGAGCCTGGG
Motif Score	4.065041667
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; LCLs; MM6; Jurkat; CD4T; GSC-11; HEK293A-TOA; MSC; TREX; iSLK; TIME; endometrial; HEC-1-A; GSCs; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784148
mod ID: M6ASITE083517		Click to Show/Hide the Full List
mod site	chr7:152464600-152464601:+		[2]
Sequence	GCAGTGGGGAGCCGGGAGGAACCTGGCGCCGGCACCCACCC
Motif Score	2.930744048
Cell/Tissue List	HeLa; HepG2; A549; Jurkat; CD4T; GSC-11; HEK293T; HEK293A-TOA; TREX; iSLK; MSC; TIME; HEC-1-A; GSCs; MM6
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784149
mod ID: M6ASITE083518		Click to Show/Hide the Full List
mod site	chr7:152464819-152464820:+		[2]
Sequence	TTTCTCCCTCTCCGGTACGGACCGCGGCGTTCTGTTTCCAG
Motif Score	3.622404762
Cell/Tissue List	HeLa; HEK293T; MM6; HEK293A-TOA; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784150
mod ID: M6ASITE083519		Click to Show/Hide the Full List
mod site	chr7:152464861-152464862:+		[2]
Sequence	CAAAGGAAAATAAGTCAAAGACTCAGAAGGCAGCCTGAATC
Motif Score	3.319380952
Cell/Tissue List	HeLa; HEK293T; MM6; HEK293A-TOA; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784151
mod ID: M6ASITE083520		Click to Show/Hide the Full List
mod site	chr7:152464978-152464979:+		[2]
Sequence	TCCATTTCCCTGCATGGTGGACTCAGTAAAGCCGGATCTGT
Motif Score	4.065041667
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; GM12878; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; MSC; TIME; TREX; iSLK; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784152
mod ID: M6ASITE083521		Click to Show/Hide the Full List
mod site	chr7:152465029-152465030:+		[2]
Sequence	CAGCGTGGATGTGGAGGCGGACTAATCAACTAGTGCTCTGT
Motif Score	4.065041667
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1B; GM12878; MM6; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784153
mod ID: M6ASITE083522		Click to Show/Hide the Full List
mod site	chr7:152465037-152465038:+		[3]
Sequence	ATGTGGAGGCGGACTAATCAACTAGTGCTCTGTTATTATTT
Motif Score	2.595904762
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784154
mod ID: M6ASITE083523		Click to Show/Hide the Full List
mod site	chr7:152465094-152465095:+		[2]
Sequence	TCCATGCTAATTTGCTTAGAACTTTAACATTGAATGGACAG
Motif Score	3.373380952
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; GM12878; MM6; Jurkat; HEK293A-TOA; iSLK; MSC; TIME; TREX
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784155
mod ID: M6ASITE083524		Click to Show/Hide the Full List
mod site	chr7:152465111-152465112:+		[2]
Sequence	AGAACTTTAACATTGAATGGACAGCAAATGTCATGTTCTGT
Motif Score	3.643047619
Cell/Tissue List	HeLa; HEK293T; A549; GM12878; HEK293A-TOA; iSLK; TREX; MSC
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784156
mod ID: M6ASITE083525		Click to Show/Hide the Full List
mod site	chr7:152465174-152465175:+		[4]
Sequence	TATGTTAATTTCTTTCCCTAACAAGGTGACGCATTGTTTTA
Motif Score	2.168095238
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784157
mod ID: M6ASITE083526		Click to Show/Hide the Full List
mod site	chr7:152465199-152465200:+		[4]
Sequence	GTGACGCATTGTTTTAAGTAACAATGACCAACTCATCTACT
Motif Score	2.168095238
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784158
mod ID: M6ASITE083527		Click to Show/Hide the Full List
mod site	chr7:152465288-152465289:+		[5]
Sequence	AATTTGAATGCTAAATTTGAACATTTCACACAACAATAATT
Motif Score	2.951386905
Cell/Tissue List	HEK293T
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784159
mod ID: M6ASITE083528		Click to Show/Hide the Full List
mod site	chr7:152465344-152465345:+		[6]
Sequence	CAATATTATGGCGTTTCGGAACAGATAAAAATACTTCATTT
Motif Score	2.951386905
Cell/Tissue List	HEK293T; Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784160
mod ID: M6ASITE083529		Click to Show/Hide the Full List
mod site	chr7:152465369-152465370:+		[6]
Sequence	TAAAAATACTTCATTTTCAGACATTTGGTCAACAAATACTT
Motif Score	2.897386905
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784161
mod ID: M6ASITE083530		Click to Show/Hide the Full List
mod site	chr7:152465380-152465381:+		[4]
Sequence	CATTTTCAGACATTTGGTCAACAAATACTTCTTGGACGTTT
Motif Score	2.173910714
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784162
mod ID: M6ASITE083531		Click to Show/Hide the Full List
mod site	chr7:152465422-152465423:+		[4]
Sequence	TATGCAAAGCAATGCATGTAACATTTTCATTACTTTGCAAG
Motif Score	2.168095238
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784163
mod ID: M6ASITE083532		Click to Show/Hide the Full List
mod site	chr7:152465508-152465509:+		[4]
Sequence	TTAAATGTATTTTAGTTACCACATTGGGAAGAAAATAAAAT
Motif Score	2.053113095
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000564834.1
External Link	RMBase: m6A_site_784164

Ref 1	Viral N(6)-methyladenosine upregulates replication and pathogenesis of human respiratory syncytial virus. Nat Commun. 2019 Oct 9;10(1):4595. doi: 10.1038/s41467-019-12504-y.
Ref 2	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.
Ref 3	DART-seq: an antibody-free method for global m(6)A detection. Nat Methods. 2019 Dec;16(12):1275-1280. doi: 10.1038/s41592-019-0570-0. Epub 2019 Sep 23.
Ref 4	Deciphering the "m(6)A Code" via Antibody-Independent Quantitative Profiling. Cell. 2019 Jul 25;178(3):731-747.e16. doi: 10.1016/j.cell.2019.06.013. Epub 2019 Jun 27.
Ref 5	Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell. 2012 Jun 22;149(7):1635-46. doi: 10.1016/j.cell.2012.05.003. Epub 2012 May 17.
Ref 6	N6-Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection. Cell Host Microbe. 2016 Nov 9;20(5):654-665. doi: 10.1016/j.chom.2016.09.015. Epub 2016 Oct 20.

Epigenetic Target Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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