Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00115)

Target Name	H1-10 antisense RNA 1 (H1-10-AS1)
Synonyms	FLJ34151; C3orf47; H1FX-AS1; chromosome 3 open reading frame 47; H1FX antisense RNA 1 (non-protein coding); H1FX antisense RNA 1 Click to Show/Hide
Gene Name	H1-10-AS1
Sequence	MGWEQETQKSRPWNQVEGRQPGHDPEQDTCSTSPFAMSKSSLRPPKKLMPCASCTAAEPDGFPWLCYSHSWKCCLTESSGHPGRMDVVYPLLYRWGN Click to Show/Hide
Family	Antisense RNAs
Gene ID	339942
HGNC ID	HGNC:27953
Ensembl Gene ID	ENSG00000206417
Chromosomal Location	3q21.3

RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00115)

H1-10 antisense RNA 1 (H1-10-AS1)

N6-methyladenosine (m6A)

In total 31 m6A sequence/site(s) in this target gene
mod ID: M6ASITE062425		Click to Show/Hide the Full List
mod site	chr3:129315566-129315567:+		[1]
Sequence	TTGCGGTTGAGCTTGAAGGAACCGTTGGCGCCGGTGCCCTT
Motif Score	2.930744048
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; U2OS; H1A; A549; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; TREX; iSLK; MSC; TIME; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000511998.1; ENST00000433902.2
External Link	RMBase: m6A_site_609014
mod ID: M6ASITE062426		Click to Show/Hide the Full List
mod site	chr3:129315811-129315812:+		[1]
Sequence	CTTCCTCTTCTTAGATGGGGACAACGCCGCCGAGCCGCCAG
Motif Score	3.643047619
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; U2OS; LCLs; A549; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000511998.1; ENST00000433902.2
External Link	RMBase: m6A_site_609019
mod ID: M6ASITE062427		Click to Show/Hide the Full List
mod site	chr3:129315898-129315899:+		[1]
Sequence	GGCCTCCTCGAGCTCCACGGACATGGTAGCAAGAGGATTGG
Motif Score	3.643047619
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; U2OS; LCLs; A549; H1299; MM6; CD4T; peripheral-blood; GSC-11; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000433902.2; ENST00000511998.1
External Link	RMBase: m6A_site_609020
mod ID: M6ASITE062428		Click to Show/Hide the Full List
mod site	chr3:129317169-129317170:+		[1]
Sequence	ACAGGGAAATGATGGCGGGAACACAGCAAAGGAGACCATGT
Motif Score	2.951386905
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; U2OS; A549; MM6; CD4T; peripheral-blood; GSC-11; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000433902.2; ENST00000511998.1
External Link	RMBase: m6A_site_609022
mod ID: M6ASITE062429		Click to Show/Hide the Full List
mod site	chr3:129317183-129317184:+		[1]
Sequence	GCGGGAACACAGCAAAGGAGACCATGTCCTGGAGAGGGTCC
Motif Score	2.876744048
Cell/Tissue List	HeLa; CD34; HepG2; HEK293T; U2OS; A549; MM6; CD4T; peripheral-blood; GSC-11; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000433902.2; ENST00000511998.1
External Link	RMBase: m6A_site_609023
mod ID: M6ASITE062430		Click to Show/Hide the Full List
mod site	chr3:129317293-129317294:+		[1]
Sequence	GGGTGCAGAGAAGGCACAGGACAGTTTTTGTTGAAGCCGTT
Motif Score	3.643047619
Cell/Tissue List	HeLa; H1B; MM6; endometrial
Seq Type List	m6A-seq
Transcript ID List	ENST00000433902.2; ENST00000511998.1
External Link	RMBase: m6A_site_609024
mod ID: M6ASITE062431		Click to Show/Hide the Full List
mod site	chr3:129317939-129317940:+		[1]
Sequence	GACTGTCTCCAGGGCACAGGACAACGTTGAGGGCCTGAGGC
Motif Score	3.643047619
Cell/Tissue List	HeLa; HEK293T; HepG2; H1A; H1B; MT4; MM6; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000433902.2; ENST00000511998.1
External Link	RMBase: m6A_site_609025
mod ID: M6ASITE062432		Click to Show/Hide the Full List
mod site	chr3:129317980-129317981:+		[1]
Sequence	CTCCACCTTCTTGAAGAAGGACCATGTGAATTTCCTGACAG
Motif Score	3.622404762
Cell/Tissue List	HeLa; HEK293T; HepG2; H1A; H1B; hESCs; MT4; MM6; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000433902.2; ENST00000511998.1
External Link	RMBase: m6A_site_609026
mod ID: M6ASITE062433		Click to Show/Hide the Full List
mod site	chr3:129317997-129317998:+		[2]
Sequence	AGGACCATGTGAATTTCCTGACAGAGAACGGGGATGGGTTT
Motif Score	2.859755952
Cell/Tissue List	HEK293
Seq Type List	m6A-REF-seq
Transcript ID List	ENST00000433902.2; ENST00000511998.1
External Link	RMBase: m6A_site_609027
mod ID: M6ASITE062434		Click to Show/Hide the Full List
mod site	chr3:129318049-129318050:+		[1]
Sequence	ACCCAGCTGAGCCTGCCGAAACTGCACAGCTGTTTCCAGGC
Motif Score	2.627720238
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; hESCs; GM12878; MM6; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000433902.2; ENST00000511998.1
External Link	RMBase: m6A_site_609028
mod ID: M6ASITE062435		Click to Show/Hide the Full List
mod site	chr3:129318100-129318101:+		[1]
Sequence	GCATGGAGGACGTGAGAGGAACAGCCAGCTGTGTGTGCTGG
Motif Score	2.951386905
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; MM6; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000511998.1; ENST00000433902.2
External Link	RMBase: m6A_site_609029
mod ID: M6ASITE062436		Click to Show/Hide the Full List
mod site	chr3:129318144-129318145:+		[1]
Sequence	CACTGATCAGGGTGCTCAGGACCAGGAGCCTTCTGAGGATG
Motif Score	3.622404762
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; fibroblasts; GM12878; MM6; Huh7; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000433902.2; ENST00000383461.6; ENST00000511998.1
External Link	RMBase: m6A_site_609030
mod ID: M6ASITE062437		Click to Show/Hide the Full List
mod site	chr3:129318175-129318176:+		[1]
Sequence	TCTGAGGATGTGCAGAGGGGACTCTGGGGAGAGGAACATGG
Motif Score	4.065041667
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; GM12878; MM6; Huh7; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000511998.1; ENST00000383461.6; ENST00000433902.2
External Link	RMBase: m6A_site_609031
mod ID: M6ASITE062438		Click to Show/Hide the Full List
mod site	chr3:129318190-129318191:+		[1]
Sequence	AGGGGACTCTGGGGAGAGGAACATGGTGGCCACAGCTGGAG
Motif Score	2.951386905
Cell/Tissue List	HeLa; HepG2; HEK293T; A549; H1A; H1B; hNPCs; hESCs; GM12878; MM6; Huh7; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000511998.1; ENST00000383461.6; ENST00000433902.2
External Link	RMBase: m6A_site_609032
mod ID: M6ASITE062439		Click to Show/Hide the Full List
mod site	chr3:129318247-129318248:+		[1]
Sequence	AGATGGGATGGGAGCAGGAAACCCAAAAGAGCCGGCCCTGG
Motif Score	2.185083333
Cell/Tissue List	HeLa; HepG2; A549; HEK293T; H1A; H1B; hNPCs; hESCs; MM6; Huh7; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000433902.2; ENST00000511998.1; ENST00000502789.2; ENST00000383461.6
External Link	RMBase: m6A_site_609033
mod ID: M6ASITE062440		Click to Show/Hide the Full List
mod site	chr3:129318269-129318270:+		[1]
Sequence	CCAAAAGAGCCGGCCCTGGAACCAGGTGGAGGGGAGGCAGC
Motif Score	2.930744048
Cell/Tissue List	HeLa; HepG2; A549; HEK293T; H1A; H1B; hESCs; MM6; Huh7; CD4T; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; GSCs
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000511998.1; ENST00000383461.6; ENST00000502789.2; ENST00000433902.2
External Link	RMBase: m6A_site_609034
mod ID: M6ASITE062441		Click to Show/Hide the Full List
mod site	chr3:129318634-129318635:+		[1]
Sequence	GCTTCCTGTACAGCTGCGGAACCGTGAGCCAATTAAACCTC
Motif Score	2.930744048
Cell/Tissue List	HeLa; GSC-11; endometrial
Seq Type List	m6A-seq
Transcript ID List	ENST00000433902.2; ENST00000383461.6; rmsk_1092566; ENST00000502789.2
External Link	RMBase: m6A_site_609035
mod ID: M6ASITE062442		Click to Show/Hide the Full List
mod site	chr3:129324385-129324386:+		[1]
Sequence	AAGCAATGGCTTCTTCAAGGACACCGAGAGGAACCTCACCT
Motif Score	3.643047619
Cell/Tissue List	HeLa; HEK293A-TOA; iSLK; TIME
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000433902.2; ENST00000502789.2; ENST00000383461.6
External Link	RMBase: m6A_site_609037
mod ID: M6ASITE062443		Click to Show/Hide the Full List
mod site	chr3:129324397-129324398:+		[3]
Sequence	CTTCAAGGACACCGAGAGGAACCTCACCTCTTTCTAAAACC
Motif Score	2.930744048
Cell/Tissue List	HEK293A-TOA; iSLK
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000383461.6; ENST00000433902.2; ENST00000502789.2
External Link	RMBase: m6A_site_609038
mod ID: M6ASITE062444		Click to Show/Hide the Full List
mod site	chr3:129324415-129324416:+		[3]
Sequence	GAACCTCACCTCTTTCTAAAACCTCCAACACAGGGCCAGGC
Motif Score	2.185083333
Cell/Tissue List	HEK293A-TOA; iSLK
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000502789.2; ENST00000433902.2; ENST00000383461.6
External Link	RMBase: m6A_site_609039
mod ID: M6ASITE062445		Click to Show/Hide the Full List
mod site	chr3:129325018-129325019:+		[4]
Sequence	TGGGAGAGTGGCGGGCAGAGACCTCCTCCGTATCCCCCTCT
Motif Score	2.876744048
Cell/Tissue List	H1A; H1B; HEK293A-TOA; endometrial
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609040
mod ID: M6ASITE062446		Click to Show/Hide the Full List
mod site	chr3:129325073-129325074:+		[4]
Sequence	GCTGTGGCAGCCCTACAGGGACTACAGGGCTCCAGCCCTAC
Motif Score	4.065041667
Cell/Tissue List	H1A; H1B; HEK293A-TOA; endometrial
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609041
mod ID: M6ASITE062447		Click to Show/Hide the Full List
mod site	chr3:129325098-129325099:+		[4]
Sequence	AGGGCTCCAGCCCTACAGGGACTCTGCGGTGGGGCGGGTGT
Motif Score	4.065041667
Cell/Tissue List	H1A; H1B; HEK293A-TOA; endometrial
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609042
mod ID: M6ASITE062448		Click to Show/Hide the Full List
mod site	chr3:129325174-129325175:+		[3]
Sequence	CTTGGCAGTGTCTCCCACAGACCCAGGAGCGCCACTAGAAA
Motif Score	2.876744048
Cell/Tissue List	HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609043
mod ID: M6ASITE062449		Click to Show/Hide the Full List
mod site	chr3:129325194-129325195:+		[3]
Sequence	ACCCAGGAGCGCCACTAGAAACAGGACCCTTCCTCAGTCAT
Motif Score	2.20572619
Cell/Tissue List	HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609044
mod ID: M6ASITE062450		Click to Show/Hide the Full List
mod site	chr3:129325199-129325200:+		[3]
Sequence	GGAGCGCCACTAGAAACAGGACCCTTCCTCAGTCATCCTGC
Motif Score	3.622404762
Cell/Tissue List	HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609045
mod ID: M6ASITE062451		Click to Show/Hide the Full List
mod site	chr3:129325268-129325269:+		[3]
Sequence	CTTTCCAGCAGCTGCGTCAGACAACGACCCACCTCATCCCC
Motif Score	2.897386905
Cell/Tissue List	HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609046
mod ID: M6ASITE062452		Click to Show/Hide the Full List
mod site	chr3:129325298-129325299:+		[3]
Sequence	ACCTCATCCCCCCAGCCAGGACCTGAACAGGCACTGACGTC
Motif Score	3.622404762
Cell/Tissue List	HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609047
mod ID: M6ASITE062453		Click to Show/Hide the Full List
mod site	chr3:129325304-129325305:+		[3]
Sequence	TCCCCCCAGCCAGGACCTGAACAGGCACTGACGTCAGATAC
Motif Score	2.951386905
Cell/Tissue List	HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609048
mod ID: M6ASITE062454		Click to Show/Hide the Full List
mod site	chr3:129325329-129325330:+		[3]
Sequence	CACTGACGTCAGATACGTAGACCTTGTTGCTGAACTTGTCA
Motif Score	2.876744048
Cell/Tissue List	HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609049
mod ID: M6ASITE062455		Click to Show/Hide the Full List
mod site	chr3:129325342-129325343:+		[3]
Sequence	TACGTAGACCTTGTTGCTGAACTTGTCAAAAACTTCAATGG
Motif Score	3.373380952
Cell/Tissue List	HEK293A-TOA
Seq Type List	m6A-seq
Transcript ID List	ENST00000383461.6
External Link	RMBase: m6A_site_609050

Ref 1	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.
Ref 2	Single-base mapping of m(6)A by an antibody-independent method. Sci Adv. 2019 Jul 3;5(7):eaax0250. doi: 10.1126/sciadv.aax0250. eCollection 2019 Jul.
Ref 3	The U6 snRNA m(6)A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention. Cell. 2017 May 18;169(5):824-835.e14. doi: 10.1016/j.cell.2017.05.003.
Ref 4	m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell. 2014 Dec 4;15(6):707-19. doi: 10.1016/j.stem.2014.09.019. Epub 2014 Oct 16.

Epigenetic Target Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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