General Information of the Epigenetic Target (ID: EPITAR00076)
Target Name Interferon induced with helicase C domain 1 (IFIH1)
Synonyms
MDA-5; Hlcd; MDA5; IDDM19
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Gene Name IFIH1
Sequence
MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVELLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNLLQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSAFLNVLRQTGNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGMENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIEHETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKCADYQINGEIICKCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECCLFSDED
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Family Helicase family, RLR subfamily
Function
Innate immune receptor which acts as a cytoplasmic sensor of viral nucleic acids and plays a major role in sensing viral infection and in the activation of a cascade of antiviral responses including the induction of type I interferons and pro-inflammatory cytokines (PubMed:32169843, PubMed:33727702, PubMed:28594402). Its ligands include mRNA lacking 2'-O-methylation at their 5' cap and long-dsRNA (>1 kb in length) (PubMed:22160685). Upon ligand binding it associates with mitochondria antiviral signaling protein (MAVS/IPS1) which activates the IKK-related kinases: TBK1 and IKBKE which phosphorylate interferon regulatory factors: IRF3 and IRF7 which in turn activate transcription of antiviral immunological genes, including interferons (IFNs); IFN-alpha and IFN-beta. Responsible for detecting the Picornaviridae family members such as encephalomyocarditis virus (EMCV), mengo encephalomyocarditis virus (ENMG), and rhinovirus (PubMed:28606988). Detects coronavirus SARS-CoV-2 (PubMed:33440148, PubMed:33514628). Can also detect other viruses such as dengue virus (DENV), west Nile virus (WNV), and reovirus. Also involved in antiviral signaling in response to viruses containing a dsDNA genome, such as vaccinia virus. Plays an important role in amplifying innate immune signaling through recognition of RNA metabolites that are produced during virus infection by ribonuclease L (RNase L). May play an important role in enhancing natural killer cell function and may be involved in growth inhibition and apoptosis in several tumor cell lines.
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Gene ID 64135
HGNC ID HGNC:18873
Ensembl Gene ID ENSG00000115267
KEGG ID hsa:64135
Chromosomal Location 2q24.2
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00076)
Interferon induced with helicase C domain 1 (IFIH1)
Adenosine-to-Inosine editing (A-to-I)
In total 1 m6A sequence/site(s) in this target gene
mod ID: A2ISITE010068 Click to Show/Hide the Full List
mod site chr2:162287811-162287812:- [1]
Sequence CAGGTTATATTTACCCAGATATACTTTAAGGTTAACTAGCT
Transcript ID List ENST00000649979.2; ENST00000263642.2; ENST00000649554.1; ENST00000648433.1
External Link RMBase: RNA-editing_site_81153
N6-methyladenosine (m6A)
In total 49 m6A sequence/site(s) in this target gene
mod ID: M6ASITE047817 Click to Show/Hide the Full List
mod site chr2:162276811-162276812:- [2]
Sequence GAGGAATAATCTTTACAAAAACACGACAGAGTGCATATGCG
Motif Score 2.20572619
Cell/Tissue List LCLs
Seq Type List m6A-seq
Transcript ID List ENST00000263642.2; ENST00000648433.1; ENST00000649554.1; ENST00000649979.2
External Link RMBase: m6A_site_497490
mod ID: M6ASITE047818 Click to Show/Hide the Full List
mod site chr2:162276847-162276848:- [2]
Sequence TAATGGAGCAATATACTAGGACTGAGGAATCAGCACGAGGA
Motif Score 4.065041667
Cell/Tissue List LCLs; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649554.1; ENST00000649979.2; ENST00000263642.2; ENST00000648433.1
External Link RMBase: m6A_site_497491
mod ID: M6ASITE047819 Click to Show/Hide the Full List
mod site chr2:162276912-162276913:- [2]
Sequence GTTGAAAAGGCTGGCTGAAAACCCAGAATATGAAAATGAAA
Motif Score 2.185083333
Cell/Tissue List LCLs; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649554.1; ENST00000648433.1; ENST00000263642.2; ENST00000649979.2
External Link RMBase: m6A_site_497492
mod ID: M6ASITE047820 Click to Show/Hide the Full List
mod site chr2:162276942-162276943:- [2]
Sequence CTAATTATTTCTTAAAGAAAACAATAAAATGTTGAAAAGGC
Motif Score 2.20572619
Cell/Tissue List LCLs; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000648433.1; ENST00000263642.2; ENST00000649979.2; ENST00000649554.1
External Link RMBase: m6A_site_497493
mod ID: M6ASITE047821 Click to Show/Hide the Full List
mod site chr2:162277444-162277445:- [2]
Sequence AACCTTTGAAACTGGATGAAACAGATAGATTTCTCATGACT
Motif Score 2.20572619
Cell/Tissue List LCLs; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649554.1; ENST00000649979.2; ENST00000648433.1; ENST00000263642.2
External Link RMBase: m6A_site_497494
mod ID: M6ASITE047822 Click to Show/Hide the Full List
mod site chr2:162277454-162277455:- [2]
Sequence GATTTAAAGAAACCTTTGAAACTGGATGAAACAGATAGATT
Motif Score 2.627720238
Cell/Tissue List LCLs; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649554.1; ENST00000648433.1; ENST00000649979.2; ENST00000263642.2
External Link RMBase: m6A_site_497495
mod ID: M6ASITE047823 Click to Show/Hide the Full List
mod site chr2:162277463-162277464:- [2]
Sequence GATGAGGATGATTTAAAGAAACCTTTGAAACTGGATGAAAC
Motif Score 2.185083333
Cell/Tissue List LCLs; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649979.2; ENST00000649554.1; ENST00000263642.2; ENST00000648433.1
External Link RMBase: m6A_site_497496
mod ID: M6ASITE047824 Click to Show/Hide the Full List
mod site chr2:162277576-162277577:- [2]
Sequence ATGCGTATACTCATCTTGAAACTTTCTATAATGAAGAGAAA
Motif Score 2.627720238
Cell/Tissue List LCLs; Huh7; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649554.1; ENST00000649979.2; ENST00000648433.1; ENST00000263642.2
External Link RMBase: m6A_site_497497
mod ID: M6ASITE047825 Click to Show/Hide the Full List
mod site chr2:162277652-162277653:- [2]
Sequence AAAGAACGTGTTTGTGCAGAACATTTGAGGAAGTACAATGA
Motif Score 2.951386905
Cell/Tissue List LCLs
Seq Type List m6A-seq
Transcript ID List ENST00000649554.1; ENST00000649979.2; ENST00000263642.2; ENST00000648433.1
External Link RMBase: m6A_site_497498
mod ID: M6ASITE047826 Click to Show/Hide the Full List
mod site chr2:162306899-162306900:- [3]
Sequence GTTATGTATGCTCTACAAAAACTTGTATGGCACTATGATTT
Motif Score 2.627720238
Cell/Tissue List CD34
Seq Type List m6A-seq
Transcript ID List ENST00000649554.1; ENST00000648433.1; ENST00000649979.2; ENST00000464129.1; ENST00000263642.2
External Link RMBase: m6A_site_497499
mod ID: M6ASITE047827 Click to Show/Hide the Full List
mod site chr2:162306951-162306952:- [3]
Sequence TCAGGCAATCTCTATTAGGAACCTCTAGTTTGTTTTCAAAA
Motif Score 2.930744048
Cell/Tissue List CD34
Seq Type List m6A-seq
Transcript ID List ENST00000649979.2; ENST00000648433.1; ENST00000649554.1; ENST00000263642.2; ENST00000464129.1
External Link RMBase: m6A_site_497500
mod ID: M6ASITE047828 Click to Show/Hide the Full List
mod site chr2:162310178-162310179:- [2]
Sequence CCAAAAATATCATATGAAAGACAAATTGAAAGTTAACTATT
Motif Score 2.897386905
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000649979.2; ENST00000421365.2; ENST00000263642.2; ENST00000649554.1; ENST00000648433.1
External Link RMBase: m6A_site_497501
mod ID: M6ASITE047829 Click to Show/Hide the Full List
mod site chr2:162310241-162310242:- [2]
Sequence TATTTGTAAATCTCACTTAAACTGCTATCTTATTTTTCTTT
Motif Score 2.627720238
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000263642.2; ENST00000649554.1; ENST00000648433.1; ENST00000421365.2; ENST00000649979.2
External Link RMBase: m6A_site_497502
mod ID: M6ASITE047830 Click to Show/Hide the Full List
mod site chr2:162310314-162310315:- [2]
Sequence TACCTAATGTGAGATTTTAAACAGCATTCAATAATAGTAAT
Motif Score 2.20572619
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000263642.2; ENST00000649979.2; ENST00000649554.1; ENST00000421365.2; ENST00000648433.1
External Link RMBase: m6A_site_497503
mod ID: M6ASITE047831 Click to Show/Hide the Full List
mod site chr2:162310406-162310407:- [4]
Sequence TCTGCTGCATATTCTTCTGAACATTTTTATACATTTTAAGC
Motif Score 2.951386905
Cell/Tissue List GM12878; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000263642.2; ENST00000648433.1; ENST00000649554.1; ENST00000421365.2; ENST00000649979.2
External Link RMBase: m6A_site_497504
mod ID: M6ASITE047832 Click to Show/Hide the Full List
mod site chr2:162310517-162310518:- [4]
Sequence TCTACTACCTTATTTTAAAAACAATATGACTACCAGAAATT
Motif Score 2.20572619
Cell/Tissue List GM12878; Huh7; iSLK; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000421365.2; ENST00000648433.1; ENST00000649554.1; ENST00000263642.2; ENST00000649979.2
External Link RMBase: m6A_site_497505
mod ID: M6ASITE047833 Click to Show/Hide the Full List
mod site chr2:162310564-162310565:- [4]
Sequence AAAATATCAACTGATCAAAGACCATTTTTCATCCAACCAAC
Motif Score 2.876744048
Cell/Tissue List GM12878; Huh7; iSLK; TIME; TREX
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000263642.2; ENST00000421365.2; ENST00000649979.2; ENST00000649554.1; ENST00000648433.1
External Link RMBase: m6A_site_497506
mod ID: M6ASITE047834 Click to Show/Hide the Full List
mod site chr2:162310643-162310644:- [5]
Sequence ATCAAAATTTTAAGAGTGGAACATATGTGATAGATCATCTA
Motif Score 2.951386905
Cell/Tissue List HeLa; U2OS; GM12878; Huh7; iSLK; MSC; TIME; TREX; NB4
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000649979.2; ENST00000649554.1; ENST00000648433.1; ENST00000421365.2; ENST00000263642.2
External Link RMBase: m6A_site_497507
mod ID: M6ASITE047835 Click to Show/Hide the Full List
mod site chr2:162310680-162310681:- [3]
Sequence GCAGAAAGACACAATGCTAAACACCAAGATTTTTAGAATCA
Motif Score 2.20572619
Cell/Tissue List CD34; HeLa; A549; GM12878; Huh7; iSLK; TIME; TREX; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000421365.2; ENST00000648433.1; ENST00000649979.2; ENST00000263642.2; ENST00000649554.1
External Link RMBase: m6A_site_497508
mod ID: M6ASITE047836 Click to Show/Hide the Full List
mod site chr2:162310692-162310693:- [3]
Sequence GAATTCAATAAAGCAGAAAGACACAATGCTAAACACCAAGA
Motif Score 2.897386905
Cell/Tissue List CD34; HeLa; A549; GM12878; CD8T; Huh7; iSLK; TIME; TREX; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000263642.2; ENST00000649979.2; ENST00000421365.2; ENST00000648433.1; ENST00000649554.1
External Link RMBase: m6A_site_497509
mod ID: M6ASITE047837 Click to Show/Hide the Full List
mod site chr2:162310810-162310811:- [3]
Sequence CGTCAAACAGGAAACAATGAACTTGTCCAAGAGTTAACAGG
Motif Score 3.373380952
Cell/Tissue List CD34; A549; GM12878; LCLs; Huh7; CD4T; iSLK; TIME; TREX; HEC-1-A; NB4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649979.2; ENST00000263642.2; ENST00000649554.1; ENST00000421365.2; ENST00000648433.1
External Link RMBase: m6A_site_497510
mod ID: M6ASITE047838 Click to Show/Hide the Full List
mod site chr2:162310817-162310818:- [3]
Sequence TGTTCTTCGTCAAACAGGAAACAATGAACTTGTCCAAGAGT
Motif Score 2.20572619
Cell/Tissue List CD34; A549; GM12878; LCLs; Huh7; CD4T; iSLK; TIME; TREX; HEC-1-A; NB4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000263642.2; ENST00000648433.1; ENST00000649554.1; ENST00000649979.2; ENST00000421365.2
External Link RMBase: m6A_site_497511
mod ID: M6ASITE047839 Click to Show/Hide the Full List
mod site chr2:162310824-162310825:- [3]
Sequence TTCTGAATGTTCTTCGTCAAACAGGAAACAATGAACTTGTC
Motif Score 2.20572619
Cell/Tissue List CD34; A549; GM12878; LCLs; Huh7; CD4T; iSLK; TIME; TREX; HEC-1-A; NB4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000263642.2; ENST00000649979.2; ENST00000649554.1; ENST00000421365.2; ENST00000648433.1
External Link RMBase: m6A_site_497512
mod ID: M6ASITE047840 Click to Show/Hide the Full List
mod site chr2:162310859-162310860:- [3]
Sequence AAGGATTGTGCAGAAAGAAAACTGGTTCTCTGCATTTCTGA
Motif Score 2.627720238
Cell/Tissue List CD34; HepG2; A549; GM12878; LCLs; MM6; Huh7; CD4T; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649554.1; ENST00000649979.2; ENST00000421365.2; ENST00000263642.2; ENST00000648433.1
External Link RMBase: m6A_site_497513
mod ID: M6ASITE047841 Click to Show/Hide the Full List
mod site chr2:162310916-162310917:- [3]
Sequence ACAGATTGCTGCTGCAGAAAACAATGGAAATGAATCAGGTG
Motif Score 2.20572619
Cell/Tissue List CD34; A549; HepG2; GM12878; LCLs; MM6; Huh7; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649979.2; ENST00000649554.1; ENST00000648433.1; ENST00000263642.2; ENST00000421365.2
External Link RMBase: m6A_site_497514
mod ID: M6ASITE047842 Click to Show/Hide the Full List
mod site chr2:162311280-162311281:- [3]
Sequence TAGACATAACATGGCTGCAGACTAAAGATACTTTCTCTTCT
Motif Score 3.319380952
Cell/Tissue List CD34; A549; GM12878; LCLs; MM6; Huh7; TIME; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649554.1; ENST00000649979.2; ENST00000421365.2; ENST00000263642.2; ENST00000648433.1
External Link RMBase: m6A_site_497515
mod ID: M6ASITE047843 Click to Show/Hide the Full List
mod site chr2:162317858-162317859:- [3]
Sequence GTTGACAATTGAAGACAGAAACCGGGTAGGTGTCTGTTCAG
Motif Score 2.185083333
Cell/Tissue List CD34; HeLa; A549; fibroblasts; GM12878; LCLs; MM6; Huh7; MSC; TIME; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000648433.1; ENST00000263642.2; ENST00000421365.2; ENST00000649979.2
External Link RMBase: m6A_site_497516
mod ID: M6ASITE047844 Click to Show/Hide the Full List
mod site chr2:162317864-162317865:- [3]
Sequence GGAACTGTTGACAATTGAAGACAGAAACCGGGTAGGTGTCT
Motif Score 2.897386905
Cell/Tissue List CD34; HeLa; A549; fibroblasts; GM12878; LCLs; MM6; Huh7; MSC; TIME; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000648433.1; ENST00000263642.2; ENST00000649979.2; ENST00000421365.2
External Link RMBase: m6A_site_497517
mod ID: M6ASITE047845 Click to Show/Hide the Full List
mod site chr2:162317881-162317882:- [3]
Sequence GATAAGTGCATGGAGGAGGAACTGTTGACAATTGAAGACAG
Motif Score 3.373380952
Cell/Tissue List CD34; HeLa; A549; fibroblasts; GM12878; LCLs; CD8T; MM6; Huh7; CD4T; peripheral-blood; iSLK; MSC; TIME; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000649979.2; ENST00000421365.2; ENST00000648433.1; ENST00000263642.2
External Link RMBase: m6A_site_497518
mod ID: M6ASITE047846 Click to Show/Hide the Full List
mod site chr2:162317927-162317928:- [3]
Sequence CCTTCAGCCCACTCTGGTGGACAAGCTTCTAGTTAGAGACG
Motif Score 3.643047619
Cell/Tissue List CD34; HeLa; A549; HepG2; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TREX; TIME; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000263642.2; ENST00000649979.2; ENST00000421365.2; ENST00000648433.1
External Link RMBase: m6A_site_497519
mod ID: M6ASITE047847 Click to Show/Hide the Full List
mod site chr2:162317951-162317952:- [3]
Sequence TGAATATCTCCAACTGCTGAACCTCCTTCAGCCCACTCTGG
Motif Score 2.930744048
Cell/Tissue List CD34; HeLa; A549; HepG2; fibroblasts; GM12878; LCLs; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TREX; TIME; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649979.2; ENST00000648433.1; ENST00000421365.2; ENST00000263642.2
External Link RMBase: m6A_site_497520
mod ID: M6ASITE047848 Click to Show/Hide the Full List
mod site chr2:162318005-162318006:- [3]
Sequence CATGAACCCTGAGCTCACGGACTTGCCCTCTCCATCGTTTG
Motif Score 4.065041667
Cell/Tissue List CD34; HeLa; A549; HepG2; H1B; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000648433.1; ENST00000421365.2; ENST00000263642.2; ENST00000649979.2
External Link RMBase: m6A_site_497521
mod ID: M6ASITE047849 Click to Show/Hide the Full List
mod site chr2:162318020-162318021:- [3]
Sequence TCTGGCCGCCCGCTACATGAACCCTGAGCTCACGGACTTGC
Motif Score 2.930744048
Cell/Tissue List CD34; HeLa; A549; HepG2; U2OS; H1A; H1B; fibroblasts; GM12878; LCLs; CD8T; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000649979.2; ENST00000263642.2; ENST00000421365.2; ENST00000648433.1
External Link RMBase: m6A_site_497522
mod ID: M6ASITE047850 Click to Show/Hide the Full List
mod site chr2:162318051-162318052:- [3]
Sequence TCGTGGAGGCCCTCCGGAGAACCGGCAGCCCTCTGGCCGCC
Motif Score 2.930744048
Cell/Tissue List CD34; HeLa; A549; HepG2; U2OS; H1A; H1B; fibroblasts; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649979.2; ENST00000421365.2; ENST00000648433.1; ENST00000263642.2
External Link RMBase: m6A_site_497523
mod ID: M6ASITE047851 Click to Show/Hide the Full List
mod site chr2:162318081-162318082:- [3]
Sequence GAGTCTGGCACCTTGGTTGGACTCGGGAATTCGTGGAGGCC
Motif Score 4.065041667
Cell/Tissue List CD34; HepG2; HeLa; A549; U2OS; H1A; H1B; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000648433.1; ENST00000421365.2; ENST00000649979.2; ENST00000263642.2
External Link RMBase: m6A_site_497524
mod ID: M6ASITE047852 Click to Show/Hide the Full List
mod site chr2:162318127-162318128:- [3]
Sequence GGGAACATGCAGGCAGTTGAACTGCTGCTGAGCACCTTGGA
Motif Score 3.373380952
Cell/Tissue List CD34; HepG2; HeLa; A549; U2OS; H1A; H1B; GM12878; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000263642.2; ENST00000649979.2; ENST00000648433.1; ENST00000421365.2
External Link RMBase: m6A_site_497525
mod ID: M6ASITE047853 Click to Show/Hide the Full List
mod site chr2:162318143-162318144:- [3]
Sequence GACAGTCGCCACCTCCGGGAACATGCAGGCAGTTGAACTGC
Motif Score 2.951386905
Cell/Tissue List CD34; HeLa; A549; HepG2; U2OS; H1A; H1B; GM12878; LCLs; H1299; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000421365.2; ENST00000263642.2; ENST00000649979.2; ENST00000648433.1
External Link RMBase: m6A_site_497526
mod ID: M6ASITE047854 Click to Show/Hide the Full List
mod site chr2:162318162-162318163:- [3]
Sequence TGAAGGAGCAGATTCAGAGGACAGTCGCCACCTCCGGGAAC
Motif Score 3.643047619
Cell/Tissue List CD34; HeLa; A549; HepG2; U2OS; H1A; H1B; GM12878; LCLs; H1299; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000648433.1; ENST00000263642.2; ENST00000649979.2; ENST00000421365.2
External Link RMBase: m6A_site_497527
mod ID: M6ASITE047855 Click to Show/Hide the Full List
mod site chr2:162318209-162318210:- [3]
Sequence CCAGGTGGAGCCTGTGCTGGACTACCTGACCTTTCTGCCTG
Motif Score 4.065041667
Cell/Tissue List CD34; HeLa; A549; HepG2; U2OS; GM12878; LCLs; MM6; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000263642.2; ENST00000421365.2; ENST00000649979.2; ENST00000648433.1
External Link RMBase: m6A_site_497528
mod ID: M6ASITE047856 Click to Show/Hide the Full List
mod site chr2:162318333-162318334:- [3]
Sequence AGCACCATCTGCTTGGGAGAACCCTCTCCCTTCTCTGAGAA
Motif Score 2.930744048
Cell/Tissue List CD34; A549; NB4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649979.2; ENST00000263642.2; ENST00000421365.2; ENST00000648433.1
External Link RMBase: m6A_site_497529
mod ID: M6ASITE047857 Click to Show/Hide the Full List
mod site chr2:162318358-162318359:- [3]
Sequence ACATTTCACCTGTCCCGCAGACAACAGCACCATCTGCTTGG
Motif Score 2.897386905
Cell/Tissue List CD34; A549; HEC-1-A; NB4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000648433.1; ENST00000263642.2; ENST00000421365.2; ENST00000649979.2
External Link RMBase: m6A_site_497530
mod ID: M6ASITE047858 Click to Show/Hide the Full List
mod site chr2:162318390-162318391:- [5]
Sequence CTTCTCTAAGTGGGCAGCGGACAGCGGCACGCACATTTCAC
Motif Score 3.643047619
Cell/Tissue List A549; HEC-1-A; NB4; MM6
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000263642.2; ENST00000649979.2; ENST00000421365.2; ENST00000648433.1
External Link RMBase: m6A_site_497531
mod ID: M6ASITE047859 Click to Show/Hide the Full List
mod site chr2:162318416-162318417:- [5]
Sequence TGTCAGGCACAGAGCGGTAGACCCTGCTTCTCTAAGTGGGC
Motif Score 2.876744048
Cell/Tissue List A549; LCLs; HEC-1-A; NB4; MM6
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000421365.2; ENST00000648433.1; ENST00000649979.2; ENST00000263642.2
External Link RMBase: m6A_site_497532
mod ID: M6ASITE047860 Click to Show/Hide the Full List
mod site chr2:162318449-162318450:- [3]
Sequence CCGGCCTGAGAGCCCTGTGGACAACCTCGTCATTGTCAGGC
Motif Score 3.643047619
Cell/Tissue List CD34; HeLa; A549; LCLs; HEC-1-A; NB4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000649979.2; ENST00000263642.2; ENST00000648433.1; ENST00000421365.2
External Link RMBase: m6A_site_497533
mod ID: M6ASITE047861 Click to Show/Hide the Full List
mod site chr2:162318602-162318603:- [3]
Sequence CAGGATCGCCCCGGTCCGGGACCCCAGGCGCACACCGCAGA
Motif Score 3.622404762
Cell/Tissue List CD34; HeLa; A549; U2OS; CD4T; GSC-11; iSLK; MSC; TIME; TREX; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000263642.2; ENST00000649979.2; ENST00000421365.2
External Link RMBase: m6A_site_497534
mod ID: M6ASITE047862 Click to Show/Hide the Full List
mod site chr2:162318649-162318650:- [5]
Sequence ACTGCCTGACAGAAAGCTGGACTCAAAGCTCCTACCCGAGT
Motif Score 4.065041667
Cell/Tissue List HeLa; A549; CD4T; iSLK; MSC; TIME; HEC-1-A; NB4
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000421365.2; ENST00000263642.2; ENST00000649979.2
External Link RMBase: m6A_site_497535
mod ID: M6ASITE047863 Click to Show/Hide the Full List
mod site chr2:162318669-162318670:- [5]
Sequence GTCAGGCAAACTCTGTAAGAACTGCCTGACAGAAAGCTGGA
Motif Score 3.373380952
Cell/Tissue List HeLa; A549; CD4T; iSLK; MSC; TIME; HEC-1-A; NB4
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000421365.2; ENST00000649979.2; ENST00000263642.2
External Link RMBase: m6A_site_497536
mod ID: M6ASITE047864 Click to Show/Hide the Full List
mod site chr2:162318680-162318681:- [5]
Sequence CAGAAACCAAAGTCAGGCAAACTCTGTAAGAACTGCCTGAC
Motif Score 2.627720238
Cell/Tissue List A549; MSC; TIME; iSLK; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000263642.2; ENST00000649979.2; ENST00000421365.2
External Link RMBase: m6A_site_497537
mod ID: M6ASITE047865 Click to Show/Hide the Full List
mod site chr2:162318695-162318696:- [5]
Sequence AGAAGAGAATCGAAACAGAAACCAAAGTCAGGCAAACTCTG
Motif Score 2.185083333
Cell/Tissue List A549; MSC; TIME; iSLK; HEC-1-A
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000263642.2
External Link RMBase: m6A_site_497538