Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00034)
Target Name TNFRSF10A divergent transcript (TNFRSF10A-DT)
Synonyms
LOC389641; PLACT1
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Gene Name TNFRSF10A-DT
Family Divergent transcripts
Gene ID 389641
HGNC ID HGNC:52647
Ensembl Gene ID ENSG00000246582
Chromosomal Location 8p21.3
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00034)
TNFRSF10A divergent transcript (TNFRSF10A-DT)
N6-methyladenosine (m6A)
In total 17 m6A sequence/site(s) in this target gene
mod ID: M6ASITE084144 Click to Show/Hide the Full List
mod site chr8:23224594-23224595:+ [1]
Sequence GCTCCTGCCTGGCCCCGGGGACCCCGTTCTTCCTCCGACTC
Motif Score 3.622404762
Cell/Tissue List HeLa; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000517774.1
External Link RMBase: m6A_site_789991
mod ID: M6ASITE084145 Click to Show/Hide the Full List
mod site chr8:23224639-23224640:+ [1]
Sequence GACGGGCTCCTCCTGCCCGGACATGCCCCGCCACAAGTGAC
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293A-TOA; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000517774.1
External Link RMBase: m6A_site_789992
mod ID: M6ASITE084146 Click to Show/Hide the Full List
mod site chr8:23224737-23224738:+ [1]
Sequence CGCGCTTTTCCCCAGGCAGGACCGCGGTGGGGACTCACCTG
Motif Score 3.622404762
Cell/Tissue List HeLa; A549; HEK293T; MSC; TIME; TREX; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000517774.1
External Link RMBase: m6A_site_789993
mod ID: M6ASITE084147 Click to Show/Hide the Full List
mod site chr8:23224749-23224750:+ [1]
Sequence CAGGCAGGACCGCGGTGGGGACTCACCTGCAGCAGGACCCC
Motif Score 4.065041667
Cell/Tissue List HeLa; A549; HEK293T; MSC; TIME; TREX; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000517774.1
External Link RMBase: m6A_site_789994
mod ID: M6ASITE084148 Click to Show/Hide the Full List
mod site chr8:23224765-23224766:+ [1]
Sequence GGGGACTCACCTGCAGCAGGACCCCGACGACGACAAACTTG
Motif Score 3.622404762
Cell/Tissue List HeLa; A549; HEK293T; MSC; TIME; TREX; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000517774.1
External Link RMBase: m6A_site_789995
mod ID: M6ASITE084149 Click to Show/Hide the Full List
mod site chr8:23224781-23224782:+ [1]
Sequence CAGGACCCCGACGACGACAAACTTGAAGGTCTTGTGGACCC
Motif Score 2.627720238
Cell/Tissue List HeLa; A549; HEK293T; MSC; TIME; TREX; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000517774.1
External Link RMBase: m6A_site_789996
mod ID: M6ASITE084151 Click to Show/Hide the Full List
mod site chr8:23224798-23224799:+ [1]
Sequence CAAACTTGAAGGTCTTGTGGACCCGGAGCCGAGGGCTGGCT
Motif Score 3.622404762
Cell/Tissue List HeLa; A549; HEK293T; HEK293A-TOA; TIME; TREX; MSC; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000517774.1
External Link RMBase: m6A_site_789998
mod ID: M6ASITE084157 Click to Show/Hide the Full List
mod site chr8:23225395-23225396:+ [1]
Sequence GATGGGTGGCGGAATGAAGGACACAGAGGCCACTGCGGGGT
Motif Score 3.643047619
Cell/Tissue List HeLa; peripheral-blood; HEK293A-TOA; TIME; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000517774.1; ENST00000500853.1
External Link RMBase: m6A_site_790006
mod ID: M6ASITE084158 Click to Show/Hide the Full List
mod site chr8:23225867-23225868:+ [1]
Sequence GTGTCAGGCAAGCCCGAGGGACCCAATTCTGCCTTTCTTCT
Motif Score 3.622404762
Cell/Tissue List HeLa; A549; GM12878; MM6; Huh7; peripheral-blood; HEK293T; HEK293A-TOA; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000517774.1; ENST00000522600.1; ENST00000500853.1
External Link RMBase: m6A_site_790008
mod ID: M6ASITE084159 Click to Show/Hide the Full List
mod site chr8:23225927-23225928:+ [1]
Sequence AGAGTCTTGAAAGTCCTTAAACCACGGGAGACTATCTGGCA
Motif Score 2.185083333
Cell/Tissue List HeLa; HepG2; A549; H1A; H1B; HEK293T; GM12878; MM6; Huh7; peripheral-blood; HEK293A-TOA; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000500853.1; ENST00000522600.1
External Link RMBase: m6A_site_790009
mod ID: M6ASITE084160 Click to Show/Hide the Full List
mod site chr8:23225937-23225938:+ [1]
Sequence AAGTCCTTAAACCACGGGAGACTATCTGGCACATGACACGG
Motif Score 3.319380952
Cell/Tissue List HeLa; HepG2; A549; H1A; H1B; HEK293T; GM12878; MM6; Huh7; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000500853.1; ENST00000522600.1
External Link RMBase: m6A_site_790010
mod ID: M6ASITE084161 Click to Show/Hide the Full List
mod site chr8:23225964-23225965:+ [1]
Sequence GGCACATGACACGGGATGAGACTTGGTGGGGGTCCCACGGG
Motif Score 3.319380952
Cell/Tissue List HeLa; HepG2; A549; H1A; H1B; HEK293T; GM12878; CD8T; MM6; Huh7; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000522600.1; ENST00000500853.1
External Link RMBase: m6A_site_790011
mod ID: M6ASITE084162 Click to Show/Hide the Full List
mod site chr8:23225987-23225988:+ [1]
Sequence TGGTGGGGGTCCCACGGGGGACAGGTCCTTCCAGCGGTTCC
Motif Score 3.643047619
Cell/Tissue List HeLa; HepG2; A549; H1A; H1B; HEK293T; GM12878; MM6; Huh7; Jurkat; CD4T; peripheral-blood; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000500853.1; ENST00000522600.1
External Link RMBase: m6A_site_790012
mod ID: M6ASITE084163 Click to Show/Hide the Full List
mod site chr8:23226091-23226092:+ [1]
Sequence CACGGTCCTGCCTGCGAAGAACTCCCAGGGCGACCTTGGGG
Motif Score 3.373380952
Cell/Tissue List HeLa; HepG2; A549; H1A; H1B; GM12878; MM6; Jurkat; CD4T; peripheral-blood; HEK293T; HEK293A-TOA; MSC; TIME; TREX; iSLK; endometrial; HEC-1-A; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000522600.1; ENST00000500853.1
External Link RMBase: m6A_site_790013
mod ID: M6ASITE084164 Click to Show/Hide the Full List
mod site chr8:23228115-23228116:+ [1]
Sequence GTGGTGACCCTCACCAGAGGACAGCTTCATGCTCTTGGACT
Motif Score 3.643047619
Cell/Tissue List HeLa; peripheral-blood
Seq Type List m6A-seq
Transcript ID List ENST00000522600.1; rmsk_2464150; ENST00000500853.1
External Link RMBase: m6A_site_790014
mod ID: M6ASITE084165 Click to Show/Hide the Full List
mod site chr8:23228133-23228134:+ [1]
Sequence GGACAGCTTCATGCTCTTGGACTTCCCAGCCTCAAGAACTG
Motif Score 4.065041667
Cell/Tissue List HeLa; peripheral-blood
Seq Type List m6A-seq
Transcript ID List ENST00000500853.1; ENST00000522600.1; rmsk_2464150
External Link RMBase: m6A_site_790015
mod ID: M6ASITE084166 Click to Show/Hide the Full List
mod site chr8:23228150-23228151:+ [1]
Sequence TGGACTTCCCAGCCTCAAGAACTGTAAGAAATAAATTTCTT
Motif Score 3.373380952
Cell/Tissue List HeLa; peripheral-blood
Seq Type List m6A-seq
Transcript ID List ENST00000522600.1; ENST00000500853.1; rmsk_2464150
External Link RMBase: m6A_site_790016