General Information of the Epigenetic Target (ID: EPITAR00023)
Target Name Forkhead box protein D1 (FOXD1)
Synonyms
Forkhead-related protein FKHL8; Forkhead-related transcription factor 4; FREAC-4; FKHL8; FREAC4
    Click to Show/Hide
Gene Name FOXD1
Sequence
MTLSTEMSDASGLAEETDIDVVGEGEDEEDEEEEDDDEGGGGGPRLAVPAQRRRRRRSYAGEDELEDLEEEEDDDDILLAPPAGGSPAPPGPAPAAGAGAGGGGGGGGAGGGGSAGSGAKNPLVKPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGSFLRRRKRFKRQPLLPPNAAAAESLLLRGAGAAGGAGDPAAAAALFPPAPPPPPHAYGYGPYGCGYGLQLPPYAPPSALFAAAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAGGPGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAALTRSLVAAAAAAASSVSSSAALGTLHQGTALSSVENFTARISNC
    Click to Show/Hide
Function
Transcription factor involved in regulation of gene expression in a variety of processes, including formation of positional identity in the developing retina, regionalization of the optic chiasm, morphogenesis of the kidney, and neuralization of ectodermal cells (By similarity). Involved in transcriptional activation of PGF and C3 genes.
    Click to Show/Hide
Gene ID 2297
HGNC ID HGNC:3802
Ensembl Gene ID ENSG00000251493
KEGG ID hsa:2297
Chromosomal Location 5q13.2
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00023)
Forkhead box protein D1 (FOXD1)
5-methylcytidine (m5C)
In total 9 m6A sequence/site(s) in this target gene
mod ID: M5CSITE003464 Click to Show/Hide the Full List
mod site chr5:73447070-73447071:- [1]
Sequence ATCCCTCGTGGCCGCCGCGGCCGCCGCCGCCTCCTCAGTCT
Seq Type List Bisulfite-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m5C_site_35249
mod ID: M5CSITE003465 Click to Show/Hide the Full List
mod site chr5:73447075-73447076:- [1]
Sequence ACCCGATCCCTCGTGGCCGCCGCGGCCGCCGCCGCCTCCTC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m5C_site_35250
mod ID: M5CSITE003466 Click to Show/Hide the Full List
mod site chr5:73447102-73447103:- [1]
Sequence GCGGCCGTGGGCCCGGCGGCCGCGCTCACCCGATCCCTCGT
Seq Type List Bisulfite-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m5C_site_35251
mod ID: M5CSITE003467 Click to Show/Hide the Full List
mod site chr5:73447103-73447104:- [1]
Sequence GGCGGCCGTGGGCCCGGCGGCCGCGCTCACCCGATCCCTCG
Seq Type List Bisulfite-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m5C_site_35252
mod ID: M5CSITE003468 Click to Show/Hide the Full List
mod site chr5:73447106-73447107:- [1]
Sequence GCAGGCGGCCGTGGGCCCGGCGGCCGCGCTCACCCGATCCC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m5C_site_35253
mod ID: M5CSITE003469 Click to Show/Hide the Full List
mod site chr5:73447109-73447110:- [1]
Sequence GGCGCAGGCGGCCGTGGGCCCGGCGGCCGCGCTCACCCGAT
Seq Type List Bisulfite-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m5C_site_35254
mod ID: M5CSITE003470 Click to Show/Hide the Full List
mod site chr5:73447110-73447111:- [1]
Sequence CGGCGCAGGCGGCCGTGGGCCCGGCGGCCGCGCTCACCCGA
Seq Type List Bisulfite-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m5C_site_35255
mod ID: M5CSITE003471 Click to Show/Hide the Full List
mod site chr5:73447111-73447112:- [1]
Sequence GCGGCGCAGGCGGCCGTGGGCCCGGCGGCCGCGCTCACCCG
Seq Type List Bisulfite-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m5C_site_35256
mod ID: M5CSITE003472 Click to Show/Hide the Full List
mod site chr5:73447258-73447259:-
Sequence TTCTCCATCGAGAGCATCATCGGGGGCAGCTTGGGCCCGGC
Cell/Tissue List testis
Seq Type List Bisulfite-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m5C_site_35257
N6-methyladenosine (m6A)
In total 35 m6A sequence/site(s) in this target gene
mod ID: M6ASITE069362 Click to Show/Hide the Full List
mod site chr5:73444902-73444903:- [2]
Sequence GCGGAATCCAAACGGCACAGACACTGCTGGCGCGCCTGGTA
Motif Score 2.897386905
Cell/Tissue List HeLa; HEK293T; H1299; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000513595.1
External Link RMBase: m6A_site_672598
mod ID: M6ASITE069363 Click to Show/Hide the Full List
mod site chr5:73444959-73444960:- [2]
Sequence TTGAACCCGAGAACGTCCGGACTCCACGCGCCGCCCCGGGT
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; H1299; HEK293A-TOA
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000513595.1
External Link RMBase: m6A_site_672599
mod ID: M6ASITE069364 Click to Show/Hide the Full List
mod site chr5:73444975-73444976:- [2]
Sequence TAAGAGAGAGGAGTCATTGAACCCGAGAACGTCCGGACTCC
Motif Score 2.930744048
Cell/Tissue List HeLa; HEK293T; H1299; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000513595.1
External Link RMBase: m6A_site_672600
mod ID: M6ASITE069365 Click to Show/Hide the Full List
mod site chr5:73445038-73445039:- [3]
Sequence ACAAATTGAAATACTGTTAGACCAAAGTCTTATATACAAAA
Motif Score 2.876744048
Cell/Tissue List HEK293T; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000513595.1
External Link RMBase: m6A_site_672601
mod ID: M6ASITE069366 Click to Show/Hide the Full List
mod site chr5:73445080-73445081:- [4]
Sequence TTAAACCCTCTCACTCTCAAACTTACCACTAAATCTATAGA
Motif Score 2.627720238
Cell/Tissue List HEK293T; H1299; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000513595.1
External Link RMBase: m6A_site_672602
mod ID: M6ASITE069367 Click to Show/Hide the Full List
mod site chr5:73445096-73445097:- [4]
Sequence AAATGTTTGGAGGAGGTTAAACCCTCTCACTCTCAAACTTA
Motif Score 2.185083333
Cell/Tissue List HEK293T; H1299; HEK293A-TOA
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000513595.1
External Link RMBase: m6A_site_672603
mod ID: M6ASITE069368 Click to Show/Hide the Full List
mod site chr5:73445165-73445166:- [5]
Sequence TCTTTTTAGGGAGAAAACGGACTCTCACGGGCTCAAATGAA
Motif Score 4.065041667
Cell/Tissue List HEK293T; fibroblasts; A549; H1299; MM6; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000513595.1
External Link RMBase: m6A_site_672604
mod ID: M6ASITE069369 Click to Show/Hide the Full List
mod site chr5:73446305-73446306:- [6]
Sequence ATTCTAAATGTAAGATTTTTACACTTTTTCAGAAATAAAAA
Motif Score 2.07285119
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000513595.1; ENST00000615637.3
External Link RMBase: m6A_site_672605
mod ID: M6ASITE069370 Click to Show/Hide the Full List
mod site chr5:73446367-73446368:- [7]
Sequence GTACTTACTGCGTATTCTTTACAAGGAGTATTGTAAATTTT
Motif Score 2.07285119
Cell/Tissue List HEK293; hESC-HEK293T
Seq Type List m6A-REF-seq; MAZTER-seq
Transcript ID List ENST00000615637.3; ENST00000513595.1
External Link RMBase: m6A_site_672606
mod ID: M6ASITE069371 Click to Show/Hide the Full List
mod site chr5:73446385-73446386:- [8]
Sequence AGACGTGTGGATTTTTTTGTACTTACTGCGTATTCTTTACA
Motif Score 3.278136905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000615637.3; ENST00000513595.1
External Link RMBase: m6A_site_672607
mod ID: M6ASITE069372 Click to Show/Hide the Full List
mod site chr5:73446460-73446461:- [8]
Sequence AAAATGGTTAACATGTTTACACAAGAAAAAAAGTCAAAATT
Motif Score 2.084928571
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000615637.3; ENST00000513595.1
External Link RMBase: m6A_site_672609
mod ID: M6ASITE069373 Click to Show/Hide the Full List
mod site chr5:73446470-73446471:- [6]
Sequence ATGAAAAGGAAAAATGGTTAACATGTTTACACAAGAAAAAA
Motif Score 2.168095238
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000615637.3; ENST00000513595.1
External Link RMBase: m6A_site_672611
mod ID: M6ASITE069374 Click to Show/Hide the Full List
mod site chr5:73446513-73446514:- [6]
Sequence CAATTCTTTTTTATTTGAGGACACTTGTCTGGTGTACTTTT
Motif Score 3.643047619
Cell/Tissue List HEK293T; hESC-HEK293T; fibroblasts; A549; HEK293A-TOA
Seq Type List MeRIP-seq; MAZTER-seq; m6A-seq; m6A-CLIP/IP
Transcript ID List ENST00000615637.3; ENST00000513595.1
External Link RMBase: m6A_site_672613
mod ID: M6ASITE069375 Click to Show/Hide the Full List
mod site chr5:73446570-73446571:- [8]
Sequence ATAATGGTCAAAAGAATAATACAAAAATAGTAAAGGTCTTG
Motif Score 2.110482143
Cell/Tissue List HEK293T; hESC-HEK293T
Seq Type List DART-seq; MAZTER-seq
Transcript ID List ENST00000513595.1; ENST00000615637.3
External Link RMBase: m6A_site_672615
mod ID: M6ASITE069376 Click to Show/Hide the Full List
mod site chr5:73446641-73446642:- [9]
Sequence TGACGTTTGGCAGATGAAAAACAACTAAGCCTTTTTGAGGT
Motif Score 2.20572619
Cell/Tissue List HEK293T; A549; hESC-HEK293T; U2OS; fibroblasts; H1299; MM6; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; MAZTER-seq; m6A-seq
Transcript ID List ENST00000615637.3; ENST00000513595.1
External Link RMBase: m6A_site_672617
mod ID: M6ASITE069377 Click to Show/Hide the Full List
mod site chr5:73446659-73446660:- [10]
Sequence AGGCACTAGAGGCTCCCTTGACGTTTGGCAGATGAAAAACA
Motif Score 2.833690476
Cell/Tissue List A549
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000615637.3; ENST00000513595.1
External Link RMBase: m6A_site_672618
mod ID: M6ASITE069378 Click to Show/Hide the Full List
mod site chr5:73446729-73446730:- [8]
Sequence CTACAGCCCCCCAACCCCCGACCTGGGGTAGGGAGGAAGAG
Motif Score 2.844928571
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000513595.1; ENST00000615637.3
External Link RMBase: m6A_site_672621
mod ID: M6ASITE069379 Click to Show/Hide the Full List
mod site chr5:73446816-73446817:- [2]
Sequence GCTGCGAATTCTCGGACAAAACTGTCAACAGCCCGGGCGCG
Motif Score 2.627720238
Cell/Tissue List HeLa; HEK293T; A549; HepG2; U2OS; fibroblasts; H1299; MM6; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000513595.1; ENST00000615637.3
External Link RMBase: m6A_site_672622
mod ID: M6ASITE069380 Click to Show/Hide the Full List
mod site chr5:73446821-73446822:- [2]
Sequence TCGCCGCTGCGAATTCTCGGACAAAACTGTCAACAGCCCGG
Motif Score 3.643047619
Cell/Tissue List HeLa; HEK293T; A549; HepG2; U2OS; fibroblasts; H1299; MM6; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000513595.1; ENST00000615637.3
External Link RMBase: m6A_site_672623
mod ID: M6ASITE069381 Click to Show/Hide the Full List
mod site chr5:73446858-73446859:- [10]
Sequence TCCAGGCGCGGCCCCTCTCGACCTCGCGCGCCCATTTTCGC
Motif Score 2.844928571
Cell/Tissue List A549
Seq Type List m6A-CLIP/IP
Transcript ID List ENST00000615637.3; ENST00000513595.1
External Link RMBase: m6A_site_672624
mod ID: M6ASITE069382 Click to Show/Hide the Full List
mod site chr5:73446987-73446988:- [8]
Sequence TGTCCAGTGTCGAGAACTTTACTGCTAGGATTTCCAATTGT
Motif Score 2.494845238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000513595.1; ENST00000615637.3
External Link RMBase: m6A_site_672625
mod ID: M6ASITE069383 Click to Show/Hide the Full List
mod site chr5:73446992-73446993:- [2]
Sequence TGCCCTGTCCAGTGTCGAGAACTTTACTGCTAGGATTTCCA
Motif Score 3.373380952
Cell/Tissue List HeLa; HEK293T; A549; HepG2; U2OS; hESCs; fibroblasts; H1299; MM6; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672626
mod ID: M6ASITE069384 Click to Show/Hide the Full List
mod site chr5:73447014-73447015:- [2]
Sequence TGGGGACTCTGCACCAAGGGACTGCCCTGTCCAGTGTCGAG
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; HepG2; U2OS; H1B; hESCs; fibroblasts; H1299; MM6; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672627
mod ID: M6ASITE069385 Click to Show/Hide the Full List
mod site chr5:73447029-73447030:- [2]
Sequence CCTCGTCCGCCGCCTTGGGGACTCTGCACCAAGGGACTGCC
Motif Score 4.065041667
Cell/Tissue List HeLa; HEK293T; A549; HepG2; U2OS; H1B; hESCs; fibroblasts; H1299; MM6; HEK293A-TOA; iSLK; MSC; TIME
Seq Type List m6A-seq; MeRIP-seq; m6A-CLIP/IP
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672628
mod ID: M6ASITE069386 Click to Show/Hide the Full List
mod site chr5:73447389-73447390:- [11]
Sequence CGGCCGCCGAGCTGGCCCGGACCGCCTTCGGCTACCGGCCG
Motif Score 3.622404762
Cell/Tissue List U2OS; H1299; GSC-11; HEK293T; HEK293A-TOA; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672629
mod ID: M6ASITE069387 Click to Show/Hide the Full List
mod site chr5:73447742-73447743:- [6]
Sequence GCTGGACCCGGAGTCCGCCGACATGTTCGACAACGGCAGCT
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672630
mod ID: M6ASITE069388 Click to Show/Hide the Full List
mod site chr5:73447757-73447758:- [2]
Sequence GGGCAACTACTGGACGCTGGACCCGGAGTCCGCCGACATGT
Motif Score 3.622404762
Cell/Tissue List HeLa; HEK293T; A549; HepG2; U2OS; fibroblasts; H1299; MM6; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672631
mod ID: M6ASITE069389 Click to Show/Hide the Full List
mod site chr5:73447838-73447839:- [6]
Sequence CTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACT
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672632
mod ID: M6ASITE069390 Click to Show/Hide the Full List
mod site chr5:73447850-73447851:- [2]
Sequence GAAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCT
Motif Score 2.951386905
Cell/Tissue List HeLa; HEK293T; A549; U2OS; fibroblasts; H1299; MM6; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672633
mod ID: M6ASITE069391 Click to Show/Hide the Full List
mod site chr5:73448000-73448001:- [11]
Sequence CGCGGGTAGCGGCGCCAAGAACCCGCTGGTGAAGCCGCCCT
Motif Score 2.930744048
Cell/Tissue List U2OS; H1299; MM6; HEK293A-TOA; iSLK; MSC
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672634
mod ID: M6ASITE069392 Click to Show/Hide the Full List
mod site chr5:73448313-73448314:- [2]
Sequence CCTCTGGCCTCGCCGAGGAAACAGACATCGACGTGGTGGGG
Motif Score 2.20572619
Cell/Tissue List HeLa; HepG2; U2OS; H1B; H1A; HEK293T; H1299; MM6; Jurkat; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; GSCs; NB4
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672635
mod ID: M6ASITE069393 Click to Show/Hide the Full List
mod site chr5:73448436-73448437:- [11]
Sequence GGCCGGGCCTGCCGCCCGGGACCCGGGCTGGGGCGCAGAGG
Motif Score 3.622404762
Cell/Tissue List U2OS; H1299; GSC-11; HEK293T; HEK293A-TOA; iSLK; MSC; MM6
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672636
mod ID: M6ASITE069394 Click to Show/Hide the Full List
mod site chr5:73448530-73448531:- [11]
Sequence TTATAAAGTCGGCGCGCGAGACTCCGCCGCCACCCGGCAGC
Motif Score 3.319380952
Cell/Tissue List U2OS; H1299; MM6; GSC-11; HEK293T; HEK293A-TOA; MSC; iSLK
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672637
mod ID: M6ASITE069395 Click to Show/Hide the Full List
mod site chr5:73448740-73448741:- [2]
Sequence TCGCCGAGCTCTGTTCTTAGACTCTCACCCGTCCCGCACGT
Motif Score 3.319380952
Cell/Tissue List HeLa; MM6; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672638
mod ID: M6ASITE069396 Click to Show/Hide the Full List
mod site chr5:73448774-73448775:- [12]
Sequence GAAGGTCCGCCCTCTCCTGGACTCAGCCCTGGCCTCGCCGA
Motif Score 4.065041667
Cell/Tissue List MM6; HEK293A-TOA; iSLK
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000615637.3
External Link RMBase: m6A_site_672639