Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00019)

Target Name	TRNA-Gln (anticodon TTG) 1-1 (TRQ-TTG1-1)
Synonyms	tRNA-Gln-TTG-1-1; TRQ2; TRNAQ2; tRNA glutamine 2; transfer RNA glutamine 2; transfer RNA glutamine 2 (anticodon UUG); transfer RNA-Gln (TTG) 1-1 Click to Show/Hide
Gene Name	TRQ-TTG1-1
Family	Cytoplasmic transfer RNAs
Gene ID	7229
HGNC ID	HGNC:12342
Chromosomal Location	17q21.32

RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00019)

TRNA-Gln (anticodon TTG) 1-1 (TRQ-TTG1-1)

2'-O-Methylation (2'-O-Me)

In total 2 m6A sequence/site(s) in this target gene
mod ID: 2OMSITE000165		Click to Show/Hide the Full List
mod site	chr17:49192558-49192559:+		[1]
Sequence	GTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGAG
Cell/Tissue List	cytosolic
Transcript ID List	chr17.trna14; rmsk_4710985
External Link	RMBase: Nm_site_2512
mod ID: 2OMSITE000164		Click to Show/Hide the Full List
mod site	chr17:49192543-49192544:+		[1]
Sequence	AGCAGGTCCCATGGTGTAATGGTTAGCACTCTGGACTTTGA
Cell/Tissue List	cytosolic
Transcript ID List	rmsk_4710985; chr17.trna14
External Link	RMBase: Nm_site_2511

Other RNA modification (D)

In total 3 m6A sequence/site(s) in this target gene
mod ID: RNASITE000008		Click to Show/Hide the Full List
mod site	chr17:49192545-49192546:+		[1]
Sequence	CAGGTCCCATGGTGTAATGGTTAGCACTCTGGACTTTGAAT
Cell/Tissue List	cytosolic
Transcript ID List	rmsk_4710985; chr17.trna14
External Link	RMBase: otherMod_site_532
mod ID: RNASITE000009		Click to Show/Hide the Full List
mod site	chr17:49192546-49192547:+		[1]
Sequence	AGGTCCCATGGTGTAATGGTTAGCACTCTGGACTTTGAATC
Cell/Tissue List	cytosolic
Transcript ID List	chr17.trna14; rmsk_4710985
External Link	RMBase: otherMod_site_533
mod ID: RNASITE000010		Click to Show/Hide the Full List
mod site	chr17:49192560-49192561:+		[1]
Sequence	AATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGAGTT
Cell/Tissue List	cytosolic
Transcript ID List	rmsk_4710985; chr17.trna14
External Link	RMBase: otherMod_site_534

N1-methyladenosine (m1A)

In total 1 m6A sequence/site(s) in this target gene
mod ID: M1ASITE000059		Click to Show/Hide the Full List
mod site	chr17:49192583-49192584:+		[1]
Sequence	AATCCAGCGATCCGAGTTCAAATCTCGGTGGGACCTCACGA
Cell/Tissue List	cytosolic
Transcript ID List	chr17.trna14; rmsk_4710985
External Link	RMBase: m1A_site_465

N1-methylguanosine (m1G)

In total 1 m6A sequence/site(s) in this target gene
mod ID: RNASITE000007		Click to Show/Hide the Full List
mod site	chr17:49192535-49192536:+
Sequence	AAGAAGCCAGCAGGTCCCATGGTGTAATGGTTAGCACTCTG
Cell/Tissue List	cytosolic
Transcript ID List	rmsk_4710985; chr17.trna14
External Link	RMBase: otherMod_site_531

5-methylcytidine (m5C)

In total 5 m6A sequence/site(s) in this target gene
mod ID: M5CSITE001207		Click to Show/Hide the Full List
mod site	chr17:49192532-49192533:+		[2]
Sequence	CTTAAGAAGCCAGCAGGTCCCATGGTGTAATGGTTAGCACT
Transcript ID List	chr17.trna14; rmsk_4710985
External Link	RMBase: m5C_site_19442
mod ID: M5CSITE001208		Click to Show/Hide the Full List
mod site	chr17:49192549-49192550:+		[2]
Sequence	TCCCATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAG
Transcript ID List	rmsk_4710985; chr17.trna14
External Link	RMBase: m5C_site_19443
mod ID: M5CSITE001209		Click to Show/Hide the Full List
mod site	chr17:49192574-49192575:+		[1]
Sequence	TGGACTTTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGG
Cell/Tissue List	cytosolic
Transcript ID List	rmsk_4710985; chr17.trna14
External Link	RMBase: m5C_site_19444
mod ID: M5CSITE001210		Click to Show/Hide the Full List
mod site	chr17:49192575-49192576:+		[1]
Sequence	GGACTTTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGGA
Cell/Tissue List	cytosolic
Transcript ID List	rmsk_4710985; chr17.trna14
External Link	RMBase: m5C_site_19445
mod ID: M5CSITE001211		Click to Show/Hide the Full List
mod site	chr17:49192581-49192582:+		[2]
Sequence	TGAATCCAGCGATCCGAGTTCAAATCTCGGTGGGACCTCAC
Transcript ID List	rmsk_4710985; chr17.trna14
External Link	RMBase: m5C_site_19446

Pseudouridine (Pseudo)

In total 5 m6A sequence/site(s) in this target gene
mod ID: PSESITE000103		Click to Show/Hide the Full List
mod site	chr17:49192539-49192540:+		[1]
Sequence	AGCCAGCAGGTCCCATGGTGTAATGGTTAGCACTCTGGACT
Cell/Tissue List	cytosolic
Transcript ID List	chr17.trna14; rmsk_4710985
External Link	RMBase: Pseudo_site_2221
mod ID: PSESITE000104		Click to Show/Hide the Full List
mod site	chr17:49192554-49192555:+		[1]
Sequence	TGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATC
Cell/Tissue List	cytosolic
Transcript ID List	chr17.trna14; rmsk_4710985
External Link	RMBase: Pseudo_site_2222
mod ID: PSESITE000105		Click to Show/Hide the Full List
mod site	chr17:49192565-49192566:+		[1]
Sequence	TTAGCACTCTGGACTTTGAATCCAGCGATCCGAGTTCAAAT
Cell/Tissue List	cytosolic
Transcript ID List	chr17.trna14; rmsk_4710985
External Link	RMBase: Pseudo_site_2223
mod ID: PSESITE000106		Click to Show/Hide the Full List
mod site	chr17:49192579-49192580:+		[1]
Sequence	TTTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGGACCTC
Cell/Tissue List	cytosolic
Transcript ID List	chr17.trna14; rmsk_4710985
External Link	RMBase: Pseudo_site_2224
mod ID: PSESITE000107		Click to Show/Hide the Full List
mod site	chr17:49192580-49192581:+		[1]
Sequence	TTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGGACCTCA
Cell/Tissue List	cytosolic
Transcript ID List	chr17.trna14; rmsk_4710985
External Link	RMBase: Pseudo_site_2225

Ref 1	MODOMICS: a database of RNA modification pathways. 2017 update. Nucleic Acids Res. 2018 Jan 4;46(D1):D303-D307. doi: 10.1093/nar/gkx1030.
Ref 2	Identification of direct targets and modified bases of RNA cytosine methyltransferases. Nat Biotechnol. 2013 May;31(5):458-64. doi: 10.1038/nbt.2566. Epub 2013 Apr 21.