Epigenetic Target Information
General Information of the Epigenetic Target (ID: EPITAR00012)
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00012)
| In total 2 m6A sequence/site(s) in this target gene | |||
| mod ID: 2OMSITE000184 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105779-1105780:+ | [1] | |
| Sequence | CTGTGGAAGTGGATGAAGATCCAACCCAAGGGCAAGGGCAT | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | Nm-seq | ||
| Transcript ID List | ENST00000593032.5; ENST00000585480.1; ENST00000587648.5; ENST00000588919.5; ENST00000616066.4; ENST00000354171.12; ENST00000622390.4; ENST00000611653.4; ENST00000592940.2; ENST00000589115.5 | ||
| External Link | RMBase: Nm_site_2724 | ||
| mod ID: 2OMSITE000183 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105768-1105769:+ | [1] | |
| Sequence | ACGCCCACCCGCTGTGGAAGTGGATGAAGATCCAACCCAAG | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | Nm-seq | ||
| Transcript ID List | ENST00000611653.4; ENST00000589115.5; ENST00000587648.5; ENST00000585480.1; ENST00000593032.5; ENST00000354171.12; ENST00000592940.2; ENST00000616066.4; ENST00000622390.4; ENST00000588919.5 | ||
| External Link | RMBase: Nm_site_2723 | ||
5-methylcytidine (m5C)
| In total 4 m6A sequence/site(s) in this target gene | |||
| mod ID: M5CSITE001530 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105648-1105649:+ | [2] | |
| Sequence | GACTCACTCACACACCTTGGCCGCCACAGGAGCCAGGGAGT | ||
| Seq Type List | Bisulfite-seq | ||
| Transcript ID List | ENST00000585362.6; ENST00000592940.2; ENST00000616066.4; ENST00000589115.5; ENST00000593032.5; ENST00000611653.4; ENST00000587932.2; ENST00000587648.5; ENST00000354171.12; ENST00000585480.1; ENST00000588919.5; ENST00000622390.4 | ||
| External Link | RMBase: m5C_site_21398 | ||
| mod ID: M5CSITE001531 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105649-1105650:+ | [2] | |
| Sequence | ACTCACTCACACACCTTGGCCGCCACAGGAGCCAGGGAGTA | ||
| Seq Type List | Bisulfite-seq | ||
| Transcript ID List | ENST00000587648.5; ENST00000593032.5; ENST00000611653.4; ENST00000588919.5; ENST00000585480.1; ENST00000589115.5; ENST00000622390.4; ENST00000585362.6; ENST00000587932.2; ENST00000354171.12; ENST00000616066.4; ENST00000592940.2 | ||
| External Link | RMBase: m5C_site_21399 | ||
| mod ID: M5CSITE001532 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105651-1105652:+ | [2] | |
| Sequence | TCACTCACACACCTTGGCCGCCACAGGAGCCAGGGAGTAAC | ||
| Seq Type List | Bisulfite-seq | ||
| Transcript ID List | ENST00000585362.6; ENST00000587648.5; ENST00000611653.4; ENST00000589115.5; ENST00000354171.12; ENST00000622390.4; ENST00000593032.5; ENST00000616066.4; ENST00000588919.5; ENST00000587932.2; ENST00000585480.1; ENST00000592940.2 | ||
| External Link | RMBase: m5C_site_21400 | ||
| mod ID: M5CSITE001533 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105652-1105653:+ | [2] | |
| Sequence | CACTCACACACCTTGGCCGCCACAGGAGCCAGGGAGTAACG | ||
| Seq Type List | Bisulfite-seq | ||
| Transcript ID List | ENST00000585480.1; ENST00000592940.2; ENST00000354171.12; ENST00000589115.5; ENST00000611653.4; ENST00000588919.5; ENST00000585362.6; ENST00000587932.2; ENST00000587648.5; ENST00000616066.4; ENST00000593032.5; ENST00000622390.4 | ||
| External Link | RMBase: m5C_site_21401 | ||
N6-methyladenosine (m6A)
| In total 25 m6A sequence/site(s) in this target gene | |||
| mod ID: M6ASITE037789 | Click to Show/Hide the Full List | ||
| mod site | chr19:1104121-1104122:+ | [3] | |
| Sequence | CCGCGCCTGGCCTGGCCGGGACCATGGTGAGCTAGCGCCGC | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000616066.4; ENST00000611653.4; ENST00000588919.5; ENST00000354171.12; ENST00000589115.5; ENST00000593032.5 | ||
| External Link | RMBase: m6A_site_407131 | ||
| mod ID: M6ASITE037790 | Click to Show/Hide the Full List | ||
| mod site | chr19:1104494-1104495:+ | [3] | |
| Sequence | GACGGCTGGGGCGGAGCTGGACCGTTGAGGGCCACGGCGGG | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000588919.5; ENST00000354171.12; ENST00000616066.4; ENST00000611653.4; ENST00000593032.5; ENST00000585362.6; ENST00000589115.5 | ||
| External Link | RMBase: m6A_site_407132 | ||
| mod ID: M6ASITE037791 | Click to Show/Hide the Full List | ||
| mod site | chr19:1104924-1104925:+ | [4] | |
| Sequence | CGAATGTCCCAAGTCCCAGGACCCGGTGCGCGCGGGGCCCC | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HepG2; MT4; MM6 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000585362.6; ENST00000611653.4; ENST00000616066.4; ENST00000593032.5; ENST00000588919.5; ENST00000354171.12; ENST00000622390.4; ENST00000614791.1; ENST00000589115.5 | ||
| External Link | RMBase: m6A_site_407133 | ||
| mod ID: M6ASITE037792 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105243-1105244:+ | [5] | |
| Sequence | GCACGAGTTTTCCGCCAAGGACATCGACGGGCACATGGTTA | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | hESC-HEK293T; MT4; MM6; peripheral-blood | ||
| Seq Type List | MAZTER-seq; MeRIP-seq; m6A-seq | ||
| Transcript ID List | ENST00000614791.1; ENST00000593032.5; ENST00000585362.6; ENST00000622390.4; ENST00000587648.5; ENST00000589115.5; ENST00000611653.4; ENST00000354171.12; ENST00000592940.2; ENST00000616066.4; ENST00000588919.5 | ||
| External Link | RMBase: m6A_site_407134 | ||
| mod ID: M6ASITE037793 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105270-1105271:+ | [5] | |
| Sequence | CGGGCACATGGTTAACCTGGACAAGTACCGGTGGGCGCTCG | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | hESC-HEK293T; MT4; MM6 | ||
| Seq Type List | MAZTER-seq; MeRIP-seq; m6A-seq | ||
| Transcript ID List | ENST00000592940.2; ENST00000622390.4; ENST00000354171.12; ENST00000589115.5; ENST00000588919.5; ENST00000585362.6; ENST00000611653.4; ENST00000587932.2; ENST00000616066.4; ENST00000593032.5; ENST00000614791.1; ENST00000587648.5 | ||
| External Link | RMBase: m6A_site_407135 | ||
| mod ID: M6ASITE037794 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105421-1105422:+ | [6] | |
| Sequence | GTGAGGCAAGACCGAAGTAAACTACACTCAGCTCGTCGACC | ||
| Motif Score | 2.627720238 | ||
| Cell/Tissue List | HepG2; Huh7 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000587932.2; ENST00000585362.6; ENST00000593032.5; ENST00000616066.4; ENST00000588919.5; ENST00000614791.1; ENST00000354171.12; ENST00000589115.5; ENST00000587648.5; ENST00000611653.4; ENST00000592940.2; ENST00000622390.4 | ||
| External Link | RMBase: m6A_site_407136 | ||
| mod ID: M6ASITE037795 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105424-1105425:+ | [5] | |
| Sequence | AGGCAAGACCGAAGTAAACTACACTCAGCTCGTCGACCTGC | ||
| Motif Score | 2.078666667 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000589115.5; ENST00000592940.2; ENST00000585362.6; ENST00000587648.5; ENST00000616066.4; ENST00000614791.1; ENST00000593032.5; ENST00000587932.2; ENST00000611653.4; ENST00000354171.12; ENST00000622390.4; ENST00000588919.5 | ||
| External Link | RMBase: m6A_site_407137 | ||
| mod ID: M6ASITE037796 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105493-1105494:+ | [7] | |
| Sequence | GATCCTGGCCTTCCCGTGTAACCAGTTCGGGAAGCAGGTGG | ||
| Motif Score | 2.147452381 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000593032.5; ENST00000589115.5; ENST00000587648.5; ENST00000611653.4; ENST00000616066.4; ENST00000585480.1; ENST00000587932.2; ENST00000622390.4; ENST00000354171.12; ENST00000592940.2; ENST00000585362.6; ENST00000588919.5 | ||
| External Link | RMBase: m6A_site_407138 | ||
| mod ID: M6ASITE037797 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105700-1105701:+ | [5] | |
| Sequence | CAAAGAGTTCGCCGCGGGCTACAACGTCAAATTCGATATGT | ||
| Motif Score | 2.078666667 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000592940.2; ENST00000622390.4; ENST00000616066.4; ENST00000587648.5; ENST00000589115.5; ENST00000611653.4; ENST00000585362.6; ENST00000354171.12; ENST00000588919.5; ENST00000593032.5; ENST00000585480.1 | ||
| External Link | RMBase: m6A_site_407139 | ||
| mod ID: M6ASITE037798 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105703-1105704:+ | [7] | |
| Sequence | AGAGTTCGCCGCGGGCTACAACGTCAAATTCGATATGTTCA | ||
| Motif Score | 2.147845238 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000622390.4; ENST00000589115.5; ENST00000616066.4; ENST00000593032.5; ENST00000611653.4; ENST00000585480.1; ENST00000585362.6; ENST00000592940.2; ENST00000354171.12; ENST00000587648.5; ENST00000588919.5 | ||
| External Link | RMBase: m6A_site_407140 | ||
| mod ID: M6ASITE037799 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105826-1105827:+ | [8] | |
| Sequence | AAAGTGCGTGACCTCTGGGGACAGTACGGCTGCTGGGGTGG | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | Huh7; endometrial | ||
| Seq Type List | MeRIP-seq; m6A-seq | ||
| Transcript ID List | ENST00000588919.5; ENST00000354171.12; ENST00000592940.2; ENST00000611653.4; ENST00000587648.5; ENST00000589115.5; ENST00000593032.5; ENST00000616066.4; ENST00000622390.4; ENST00000585480.1 | ||
| External Link | RMBase: m6A_site_407141 | ||
| mod ID: M6ASITE037800 | Click to Show/Hide the Full List | ||
| mod site | chr19:1105976-1105977:+ | [3] | |
| Sequence | GGGTAAGATGGCTCAGGGGGACATAGAGGGCTGTGGAGGCA | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000593032.5; ENST00000611653.4; ENST00000354171.12; ENST00000588919.5; ENST00000587648.5; ENST00000622390.4; ENST00000585480.1; ENST00000589115.5; ENST00000592940.2; ENST00000616066.4 | ||
| External Link | RMBase: m6A_site_407142 | ||
| mod ID: M6ASITE037801 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106032-1106033:+ | [3] | |
| Sequence | ACCTTTGTGGCCTCCTGGGGACAGGATGGCTCGGGGGCCTG | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000589115.5; ENST00000622390.4; ENST00000592940.2; ENST00000593032.5; ENST00000616066.4; ENST00000587648.5; ENST00000354171.12; ENST00000585480.1; ENST00000611653.4; ENST00000588919.5 | ||
| External Link | RMBase: m6A_site_407143 | ||
| mod ID: M6ASITE037802 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106068-1106069:+ | [3] | |
| Sequence | GCCTGTGGGGGGCTGTTGGGACTCTCACACTGCATGGCCTC | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | HeLa | ||
| Seq Type List | m6A-seq | ||
| Transcript ID List | ENST00000588919.5; ENST00000587648.5; ENST00000616066.4; ENST00000354171.12; ENST00000593032.5; ENST00000585480.1; ENST00000592940.2; ENST00000589115.5; ENST00000622390.4; ENST00000611653.4 | ||
| External Link | RMBase: m6A_site_407144 | ||
| mod ID: M6ASITE037803 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106192-1106193:+ | [8] | |
| Sequence | GGAGACAGGACAGCTTGGGGACTGTGGGGGGCTGCTGGGGA | ||
| Motif Score | 4.065041667 | ||
| Cell/Tissue List | Huh7; endometrial | ||
| Seq Type List | MeRIP-seq; m6A-seq | ||
| Transcript ID List | ENST00000588919.5; ENST00000585480.1; ENST00000587648.5; ENST00000354171.12; ENST00000611653.4; ENST00000589115.5; ENST00000593032.5; ENST00000622390.4; ENST00000592940.2; ENST00000616066.4 | ||
| External Link | RMBase: m6A_site_407145 | ||
| mod ID: M6ASITE037804 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106255-1106256:+ | [4] | |
| Sequence | TTCCAGTGCCATCAAGTGGAACTTCACCAAGGTAAGGGGGC | ||
| Motif Score | 3.373380952 | ||
| Cell/Tissue List | HepG2; MT4; MM6; Huh7; HEK293T; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000585480.1; ENST00000611653.4; ENST00000587648.5; ENST00000622390.4; ENST00000354171.12; ENST00000616066.4; ENST00000589115.5; ENST00000593032.5; ENST00000592940.2; ENST00000588919.5 | ||
| External Link | RMBase: m6A_site_407146 | ||
| mod ID: M6ASITE037805 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106382-1106383:+ | [9] | |
| Sequence | GGGGTGGCCCCACAGTTTGGACACCGTCTCTCCACAGTTCC | ||
| Motif Score | 3.643047619 | ||
| Cell/Tissue List | HepG2; hESC-HEK293T; MT4; MM6; Huh7; endometrial | ||
| Seq Type List | m6A-seq; MAZTER-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000611653.4; ENST00000588919.5; ENST00000622390.4; ENST00000589115.5; ENST00000354171.12; ENST00000616066.4; ENST00000585480.1; ENST00000592940.2; ENST00000587648.5; ENST00000593032.5 | ||
| External Link | RMBase: m6A_site_407147 | ||
| mod ID: M6ASITE037806 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106409-1106410:+ | [5] | |
| Sequence | CTCTCCACAGTTCCTCATCGACAAGAACGGCTGCGTGGTGA | ||
| Motif Score | 2.865571429 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000587648.5; ENST00000616066.4; ENST00000593032.5; ENST00000592940.2; ENST00000354171.12; ENST00000588919.5; ENST00000622390.4; ENST00000585480.1; ENST00000589115.5; ENST00000611653.4 | ||
| External Link | RMBase: m6A_site_407148 | ||
| mod ID: M6ASITE037807 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106440-1106441:+ | [4] | |
| Sequence | TGCGTGGTGAAGCGCTACGGACCCATGGAGGAGCCCCTGGT | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HepG2; MT4; MM6; Huh7; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000592940.2; ENST00000587648.5; ENST00000588919.5; ENST00000589115.5; ENST00000593032.5; ENST00000622390.4; ENST00000616066.4; ENST00000354171.12; ENST00000585480.1; ENST00000611653.4 | ||
| External Link | RMBase: m6A_site_407149 | ||
| mod ID: M6ASITE037808 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106552-1106553:+ | [4] | |
| Sequence | CCGACAGGTGATAGAGAAGGACCTGCCCCACTATTTCTAGC | ||
| Motif Score | 3.622404762 | ||
| Cell/Tissue List | HepG2; MT4; A549; MM6; Huh7; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000589115.5; ENST00000354171.12; ENST00000616066.4; ENST00000611653.4; ENST00000622390.4; ENST00000587648.5; ENST00000592940.2; ENST00000585480.1; ENST00000588919.5 | ||
| External Link | RMBase: m6A_site_407150 | ||
| mod ID: M6ASITE037809 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106576-1106577:+ | [5] | |
| Sequence | GCCCCACTATTTCTAGCTCCACAAGTGTGTGGCCCCGCCCG | ||
| Motif Score | 2.053113095 | ||
| Cell/Tissue List | hESC-HEK293T | ||
| Seq Type List | MAZTER-seq | ||
| Transcript ID List | ENST00000616066.4; ENST00000354171.12; ENST00000611653.4; ENST00000589115.5; ENST00000622390.4; ENST00000592940.2; ENST00000585480.1; ENST00000588919.5 | ||
| External Link | RMBase: m6A_site_407151 | ||
| mod ID: M6ASITE037810 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106654-1106655:+ | [4] | |
| Sequence | TCATGACGGCCTGCCTGCAAACCTGCTGGTGGGGCAGACCC | ||
| Motif Score | 2.185083333 | ||
| Cell/Tissue List | HepG2; MT4; A549; MM6; Huh7; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000354171.12; ENST00000592940.2; ENST00000616066.4; ENST00000585480.1; ENST00000611653.4; ENST00000588919.5; ENST00000622390.4; ENST00000589115.5 | ||
| External Link | RMBase: m6A_site_407152 | ||
| mod ID: M6ASITE037811 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106671-1106672:+ | [4] | |
| Sequence | CAAACCTGCTGGTGGGGCAGACCCGAAAATCCAGCGTGCAC | ||
| Motif Score | 2.876744048 | ||
| Cell/Tissue List | HepG2; MT4; A549; MM6; Huh7; endometrial | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000592940.2; ENST00000616066.4; ENST00000354171.12; ENST00000585480.1; ENST00000588919.5; ENST00000589115.5; ENST00000622390.4; ENST00000611653.4 | ||
| External Link | RMBase: m6A_site_407153 | ||
| mod ID: M6ASITE037812 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106766-1106767:+ | [4] | |
| Sequence | TGGCTACCTTGTGGGAATAAACAGACAAATTAGCCTGCTGG | ||
| Motif Score | 2.20572619 | ||
| Cell/Tissue List | HepG2; A549; MM6; Huh7 | ||
| Seq Type List | m6A-seq; MeRIP-seq | ||
| Transcript ID List | ENST00000354171.12; ENST00000592940.2; ENST00000588919.5; ENST00000589115.5; ENST00000611653.4; ENST00000616066.4; ENST00000622390.4; ENST00000585480.1 | ||
| External Link | RMBase: m6A_site_407154 | ||
| mod ID: M6ASITE037813 | Click to Show/Hide the Full List | ||
| mod site | chr19:1106770-1106771:+ | [7] | |
| Sequence | TACCTTGTGGGAATAAACAGACAAATTAGCCTGCTGGATCT | ||
| Motif Score | 2.897386905 | ||
| Cell/Tissue List | HEK293T | ||
| Seq Type List | DART-seq | ||
| Transcript ID List | ENST00000588919.5; ENST00000354171.12; ENST00000611653.4; ENST00000585480.1; ENST00000616066.4; ENST00000592940.2; ENST00000589115.5; ENST00000622390.4 | ||
| External Link | RMBase: m6A_site_407155 | ||
References
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