General Information of the Epigenetic Target (ID: EPITAR00012)
Target Name Phospholipid hydroperoxide glutathione peroxidase GPX4 (GPX4)
Synonyms
PHGPx; EC 1.11.1.12; Glutathione peroxidase 4; GPx-4; GSHPx-4; EC 1.11.1.9
    Click to Show/Hide
Gene Name GPX4
Sequence
MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF
    Click to Show/Hide
Family Glutathione peroxidase family
Function
Essential antioxidant peroxidase that directly reduces phospholipid hydroperoxide even if they are incorporated in membranes and lipoproteins (By similarity). Can also reduce cholesterol hydroperoxide and thymine hydroperoxide (By similarity). Plays a key role in protecting cells from oxidative damage by preventing membrane lipid peroxidation (By similarity). Required to prevent cells from ferroptosis, a non-apoptotic cell death resulting from an iron-dependent accumulation of lipid reactive oxygen species (PubMed:24439385). The presence of selenocysteine (Sec) versus Cys at the active site is essential for life: it provides resistance to overoxidation and prevents cells against ferroptosis (By similarity). The presence of Sec at the active site is also essential for the survival of a specific type of parvalbumin-positive interneurons, thereby preventing against fatal epileptic seizures (By similarity). May be required to protect cells from the toxicity of ingested lipid hydroperoxides (By similarity). Required for normal sperm development and male fertility (By similarity). Essential for maturation and survival of photoreceptor cells (By similarity). Plays a role in a primary T-cell response to viral and parasitic infection by protecting T-cells from ferroptosis and by supporting T-cell expansion (By similarity). Plays a role of glutathione peroxidase in platelets in the arachidonic acid metabolism (PubMed:11115402). Reduces hydroperoxy ester lipids formed by a 15-lipoxygenase that may play a role as down-regulator of the cellular 15-lipoxygenase pathway (By similarity). Can reduce fatty acid-derived hydroperoxides (PubMed:11115402, PubMed:36608588). Can also reduce small soluble hydroperoxides such as H2O2, cumene hydroperoxide and tert-butyl hydroperoxide (PubMed:36608588, PubMed:17630701).
    Click to Show/Hide
Gene ID 2879
HGNC ID HGNC:4556
Ensembl Gene ID ENSG00000167468
KEGG ID hsa:2879
Chromosomal Location 19p13.3
RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00012)
Phospholipid hydroperoxide glutathione peroxidase GPX4 (GPX4)
2'-O-Methylation (2'-O-Me)
In total 2 m6A sequence/site(s) in this target gene
mod ID: 2OMSITE000184 Click to Show/Hide the Full List
mod site chr19:1105779-1105780:+ [1]
Sequence CTGTGGAAGTGGATGAAGATCCAACCCAAGGGCAAGGGCAT
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000593032.5; ENST00000585480.1; ENST00000587648.5; ENST00000588919.5; ENST00000616066.4; ENST00000354171.12; ENST00000622390.4; ENST00000611653.4; ENST00000592940.2; ENST00000589115.5
External Link RMBase: Nm_site_2724
mod ID: 2OMSITE000183 Click to Show/Hide the Full List
mod site chr19:1105768-1105769:+ [1]
Sequence ACGCCCACCCGCTGTGGAAGTGGATGAAGATCCAACCCAAG
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000611653.4; ENST00000589115.5; ENST00000587648.5; ENST00000585480.1; ENST00000593032.5; ENST00000354171.12; ENST00000592940.2; ENST00000616066.4; ENST00000622390.4; ENST00000588919.5
External Link RMBase: Nm_site_2723
5-methylcytidine (m5C)
In total 4 m6A sequence/site(s) in this target gene
mod ID: M5CSITE001530 Click to Show/Hide the Full List
mod site chr19:1105648-1105649:+ [2]
Sequence GACTCACTCACACACCTTGGCCGCCACAGGAGCCAGGGAGT
Seq Type List Bisulfite-seq
Transcript ID List ENST00000585362.6; ENST00000592940.2; ENST00000616066.4; ENST00000589115.5; ENST00000593032.5; ENST00000611653.4; ENST00000587932.2; ENST00000587648.5; ENST00000354171.12; ENST00000585480.1; ENST00000588919.5; ENST00000622390.4
External Link RMBase: m5C_site_21398
mod ID: M5CSITE001531 Click to Show/Hide the Full List
mod site chr19:1105649-1105650:+ [2]
Sequence ACTCACTCACACACCTTGGCCGCCACAGGAGCCAGGGAGTA
Seq Type List Bisulfite-seq
Transcript ID List ENST00000587648.5; ENST00000593032.5; ENST00000611653.4; ENST00000588919.5; ENST00000585480.1; ENST00000589115.5; ENST00000622390.4; ENST00000585362.6; ENST00000587932.2; ENST00000354171.12; ENST00000616066.4; ENST00000592940.2
External Link RMBase: m5C_site_21399
mod ID: M5CSITE001532 Click to Show/Hide the Full List
mod site chr19:1105651-1105652:+ [2]
Sequence TCACTCACACACCTTGGCCGCCACAGGAGCCAGGGAGTAAC
Seq Type List Bisulfite-seq
Transcript ID List ENST00000585362.6; ENST00000587648.5; ENST00000611653.4; ENST00000589115.5; ENST00000354171.12; ENST00000622390.4; ENST00000593032.5; ENST00000616066.4; ENST00000588919.5; ENST00000587932.2; ENST00000585480.1; ENST00000592940.2
External Link RMBase: m5C_site_21400
mod ID: M5CSITE001533 Click to Show/Hide the Full List
mod site chr19:1105652-1105653:+ [2]
Sequence CACTCACACACCTTGGCCGCCACAGGAGCCAGGGAGTAACG
Seq Type List Bisulfite-seq
Transcript ID List ENST00000585480.1; ENST00000592940.2; ENST00000354171.12; ENST00000589115.5; ENST00000611653.4; ENST00000588919.5; ENST00000585362.6; ENST00000587932.2; ENST00000587648.5; ENST00000616066.4; ENST00000593032.5; ENST00000622390.4
External Link RMBase: m5C_site_21401
N6-methyladenosine (m6A)
In total 25 m6A sequence/site(s) in this target gene
mod ID: M6ASITE037789 Click to Show/Hide the Full List
mod site chr19:1104121-1104122:+ [3]
Sequence CCGCGCCTGGCCTGGCCGGGACCATGGTGAGCTAGCGCCGC
Motif Score 3.622404762
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000616066.4; ENST00000611653.4; ENST00000588919.5; ENST00000354171.12; ENST00000589115.5; ENST00000593032.5
External Link RMBase: m6A_site_407131
mod ID: M6ASITE037790 Click to Show/Hide the Full List
mod site chr19:1104494-1104495:+ [3]
Sequence GACGGCTGGGGCGGAGCTGGACCGTTGAGGGCCACGGCGGG
Motif Score 3.622404762
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000588919.5; ENST00000354171.12; ENST00000616066.4; ENST00000611653.4; ENST00000593032.5; ENST00000585362.6; ENST00000589115.5
External Link RMBase: m6A_site_407132
mod ID: M6ASITE037791 Click to Show/Hide the Full List
mod site chr19:1104924-1104925:+ [4]
Sequence CGAATGTCCCAAGTCCCAGGACCCGGTGCGCGCGGGGCCCC
Motif Score 3.622404762
Cell/Tissue List HepG2; MT4; MM6
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000585362.6; ENST00000611653.4; ENST00000616066.4; ENST00000593032.5; ENST00000588919.5; ENST00000354171.12; ENST00000622390.4; ENST00000614791.1; ENST00000589115.5
External Link RMBase: m6A_site_407133
mod ID: M6ASITE037792 Click to Show/Hide the Full List
mod site chr19:1105243-1105244:+ [5]
Sequence GCACGAGTTTTCCGCCAAGGACATCGACGGGCACATGGTTA
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T; MT4; MM6; peripheral-blood
Seq Type List MAZTER-seq; MeRIP-seq; m6A-seq
Transcript ID List ENST00000614791.1; ENST00000593032.5; ENST00000585362.6; ENST00000622390.4; ENST00000587648.5; ENST00000589115.5; ENST00000611653.4; ENST00000354171.12; ENST00000592940.2; ENST00000616066.4; ENST00000588919.5
External Link RMBase: m6A_site_407134
mod ID: M6ASITE037793 Click to Show/Hide the Full List
mod site chr19:1105270-1105271:+ [5]
Sequence CGGGCACATGGTTAACCTGGACAAGTACCGGTGGGCGCTCG
Motif Score 3.643047619
Cell/Tissue List hESC-HEK293T; MT4; MM6
Seq Type List MAZTER-seq; MeRIP-seq; m6A-seq
Transcript ID List ENST00000592940.2; ENST00000622390.4; ENST00000354171.12; ENST00000589115.5; ENST00000588919.5; ENST00000585362.6; ENST00000611653.4; ENST00000587932.2; ENST00000616066.4; ENST00000593032.5; ENST00000614791.1; ENST00000587648.5
External Link RMBase: m6A_site_407135
mod ID: M6ASITE037794 Click to Show/Hide the Full List
mod site chr19:1105421-1105422:+ [6]
Sequence GTGAGGCAAGACCGAAGTAAACTACACTCAGCTCGTCGACC
Motif Score 2.627720238
Cell/Tissue List HepG2; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000587932.2; ENST00000585362.6; ENST00000593032.5; ENST00000616066.4; ENST00000588919.5; ENST00000614791.1; ENST00000354171.12; ENST00000589115.5; ENST00000587648.5; ENST00000611653.4; ENST00000592940.2; ENST00000622390.4
External Link RMBase: m6A_site_407136
mod ID: M6ASITE037795 Click to Show/Hide the Full List
mod site chr19:1105424-1105425:+ [5]
Sequence AGGCAAGACCGAAGTAAACTACACTCAGCTCGTCGACCTGC
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000589115.5; ENST00000592940.2; ENST00000585362.6; ENST00000587648.5; ENST00000616066.4; ENST00000614791.1; ENST00000593032.5; ENST00000587932.2; ENST00000611653.4; ENST00000354171.12; ENST00000622390.4; ENST00000588919.5
External Link RMBase: m6A_site_407137
mod ID: M6ASITE037796 Click to Show/Hide the Full List
mod site chr19:1105493-1105494:+ [7]
Sequence GATCCTGGCCTTCCCGTGTAACCAGTTCGGGAAGCAGGTGG
Motif Score 2.147452381
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000593032.5; ENST00000589115.5; ENST00000587648.5; ENST00000611653.4; ENST00000616066.4; ENST00000585480.1; ENST00000587932.2; ENST00000622390.4; ENST00000354171.12; ENST00000592940.2; ENST00000585362.6; ENST00000588919.5
External Link RMBase: m6A_site_407138
mod ID: M6ASITE037797 Click to Show/Hide the Full List
mod site chr19:1105700-1105701:+ [5]
Sequence CAAAGAGTTCGCCGCGGGCTACAACGTCAAATTCGATATGT
Motif Score 2.078666667
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000592940.2; ENST00000622390.4; ENST00000616066.4; ENST00000587648.5; ENST00000589115.5; ENST00000611653.4; ENST00000585362.6; ENST00000354171.12; ENST00000588919.5; ENST00000593032.5; ENST00000585480.1
External Link RMBase: m6A_site_407139
mod ID: M6ASITE037798 Click to Show/Hide the Full List
mod site chr19:1105703-1105704:+ [7]
Sequence AGAGTTCGCCGCGGGCTACAACGTCAAATTCGATATGTTCA
Motif Score 2.147845238
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000622390.4; ENST00000589115.5; ENST00000616066.4; ENST00000593032.5; ENST00000611653.4; ENST00000585480.1; ENST00000585362.6; ENST00000592940.2; ENST00000354171.12; ENST00000587648.5; ENST00000588919.5
External Link RMBase: m6A_site_407140
mod ID: M6ASITE037799 Click to Show/Hide the Full List
mod site chr19:1105826-1105827:+ [8]
Sequence AAAGTGCGTGACCTCTGGGGACAGTACGGCTGCTGGGGTGG
Motif Score 3.643047619
Cell/Tissue List Huh7; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000588919.5; ENST00000354171.12; ENST00000592940.2; ENST00000611653.4; ENST00000587648.5; ENST00000589115.5; ENST00000593032.5; ENST00000616066.4; ENST00000622390.4; ENST00000585480.1
External Link RMBase: m6A_site_407141
mod ID: M6ASITE037800 Click to Show/Hide the Full List
mod site chr19:1105976-1105977:+ [3]
Sequence GGGTAAGATGGCTCAGGGGGACATAGAGGGCTGTGGAGGCA
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000593032.5; ENST00000611653.4; ENST00000354171.12; ENST00000588919.5; ENST00000587648.5; ENST00000622390.4; ENST00000585480.1; ENST00000589115.5; ENST00000592940.2; ENST00000616066.4
External Link RMBase: m6A_site_407142
mod ID: M6ASITE037801 Click to Show/Hide the Full List
mod site chr19:1106032-1106033:+ [3]
Sequence ACCTTTGTGGCCTCCTGGGGACAGGATGGCTCGGGGGCCTG
Motif Score 3.643047619
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000589115.5; ENST00000622390.4; ENST00000592940.2; ENST00000593032.5; ENST00000616066.4; ENST00000587648.5; ENST00000354171.12; ENST00000585480.1; ENST00000611653.4; ENST00000588919.5
External Link RMBase: m6A_site_407143
mod ID: M6ASITE037802 Click to Show/Hide the Full List
mod site chr19:1106068-1106069:+ [3]
Sequence GCCTGTGGGGGGCTGTTGGGACTCTCACACTGCATGGCCTC
Motif Score 4.065041667
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000588919.5; ENST00000587648.5; ENST00000616066.4; ENST00000354171.12; ENST00000593032.5; ENST00000585480.1; ENST00000592940.2; ENST00000589115.5; ENST00000622390.4; ENST00000611653.4
External Link RMBase: m6A_site_407144
mod ID: M6ASITE037803 Click to Show/Hide the Full List
mod site chr19:1106192-1106193:+ [8]
Sequence GGAGACAGGACAGCTTGGGGACTGTGGGGGGCTGCTGGGGA
Motif Score 4.065041667
Cell/Tissue List Huh7; endometrial
Seq Type List MeRIP-seq; m6A-seq
Transcript ID List ENST00000588919.5; ENST00000585480.1; ENST00000587648.5; ENST00000354171.12; ENST00000611653.4; ENST00000589115.5; ENST00000593032.5; ENST00000622390.4; ENST00000592940.2; ENST00000616066.4
External Link RMBase: m6A_site_407145
mod ID: M6ASITE037804 Click to Show/Hide the Full List
mod site chr19:1106255-1106256:+ [4]
Sequence TTCCAGTGCCATCAAGTGGAACTTCACCAAGGTAAGGGGGC
Motif Score 3.373380952
Cell/Tissue List HepG2; MT4; MM6; Huh7; HEK293T; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000585480.1; ENST00000611653.4; ENST00000587648.5; ENST00000622390.4; ENST00000354171.12; ENST00000616066.4; ENST00000589115.5; ENST00000593032.5; ENST00000592940.2; ENST00000588919.5
External Link RMBase: m6A_site_407146
mod ID: M6ASITE037805 Click to Show/Hide the Full List
mod site chr19:1106382-1106383:+ [9]
Sequence GGGGTGGCCCCACAGTTTGGACACCGTCTCTCCACAGTTCC
Motif Score 3.643047619
Cell/Tissue List HepG2; hESC-HEK293T; MT4; MM6; Huh7; endometrial
Seq Type List m6A-seq; MAZTER-seq; MeRIP-seq
Transcript ID List ENST00000611653.4; ENST00000588919.5; ENST00000622390.4; ENST00000589115.5; ENST00000354171.12; ENST00000616066.4; ENST00000585480.1; ENST00000592940.2; ENST00000587648.5; ENST00000593032.5
External Link RMBase: m6A_site_407147
mod ID: M6ASITE037806 Click to Show/Hide the Full List
mod site chr19:1106409-1106410:+ [5]
Sequence CTCTCCACAGTTCCTCATCGACAAGAACGGCTGCGTGGTGA
Motif Score 2.865571429
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000587648.5; ENST00000616066.4; ENST00000593032.5; ENST00000592940.2; ENST00000354171.12; ENST00000588919.5; ENST00000622390.4; ENST00000585480.1; ENST00000589115.5; ENST00000611653.4
External Link RMBase: m6A_site_407148
mod ID: M6ASITE037807 Click to Show/Hide the Full List
mod site chr19:1106440-1106441:+ [4]
Sequence TGCGTGGTGAAGCGCTACGGACCCATGGAGGAGCCCCTGGT
Motif Score 3.622404762
Cell/Tissue List HepG2; MT4; MM6; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000592940.2; ENST00000587648.5; ENST00000588919.5; ENST00000589115.5; ENST00000593032.5; ENST00000622390.4; ENST00000616066.4; ENST00000354171.12; ENST00000585480.1; ENST00000611653.4
External Link RMBase: m6A_site_407149
mod ID: M6ASITE037808 Click to Show/Hide the Full List
mod site chr19:1106552-1106553:+ [4]
Sequence CCGACAGGTGATAGAGAAGGACCTGCCCCACTATTTCTAGC
Motif Score 3.622404762
Cell/Tissue List HepG2; MT4; A549; MM6; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000589115.5; ENST00000354171.12; ENST00000616066.4; ENST00000611653.4; ENST00000622390.4; ENST00000587648.5; ENST00000592940.2; ENST00000585480.1; ENST00000588919.5
External Link RMBase: m6A_site_407150
mod ID: M6ASITE037809 Click to Show/Hide the Full List
mod site chr19:1106576-1106577:+ [5]
Sequence GCCCCACTATTTCTAGCTCCACAAGTGTGTGGCCCCGCCCG
Motif Score 2.053113095
Cell/Tissue List hESC-HEK293T
Seq Type List MAZTER-seq
Transcript ID List ENST00000616066.4; ENST00000354171.12; ENST00000611653.4; ENST00000589115.5; ENST00000622390.4; ENST00000592940.2; ENST00000585480.1; ENST00000588919.5
External Link RMBase: m6A_site_407151
mod ID: M6ASITE037810 Click to Show/Hide the Full List
mod site chr19:1106654-1106655:+ [4]
Sequence TCATGACGGCCTGCCTGCAAACCTGCTGGTGGGGCAGACCC
Motif Score 2.185083333
Cell/Tissue List HepG2; MT4; A549; MM6; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000354171.12; ENST00000592940.2; ENST00000616066.4; ENST00000585480.1; ENST00000611653.4; ENST00000588919.5; ENST00000622390.4; ENST00000589115.5
External Link RMBase: m6A_site_407152
mod ID: M6ASITE037811 Click to Show/Hide the Full List
mod site chr19:1106671-1106672:+ [4]
Sequence CAAACCTGCTGGTGGGGCAGACCCGAAAATCCAGCGTGCAC
Motif Score 2.876744048
Cell/Tissue List HepG2; MT4; A549; MM6; Huh7; endometrial
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000592940.2; ENST00000616066.4; ENST00000354171.12; ENST00000585480.1; ENST00000588919.5; ENST00000589115.5; ENST00000622390.4; ENST00000611653.4
External Link RMBase: m6A_site_407153
mod ID: M6ASITE037812 Click to Show/Hide the Full List
mod site chr19:1106766-1106767:+ [4]
Sequence TGGCTACCTTGTGGGAATAAACAGACAAATTAGCCTGCTGG
Motif Score 2.20572619
Cell/Tissue List HepG2; A549; MM6; Huh7
Seq Type List m6A-seq; MeRIP-seq
Transcript ID List ENST00000354171.12; ENST00000592940.2; ENST00000588919.5; ENST00000589115.5; ENST00000611653.4; ENST00000616066.4; ENST00000622390.4; ENST00000585480.1
External Link RMBase: m6A_site_407154
mod ID: M6ASITE037813 Click to Show/Hide the Full List
mod site chr19:1106770-1106771:+ [7]
Sequence TACCTTGTGGGAATAAACAGACAAATTAGCCTGCTGGATCT
Motif Score 2.897386905
Cell/Tissue List HEK293T
Seq Type List DART-seq
Transcript ID List ENST00000588919.5; ENST00000354171.12; ENST00000611653.4; ENST00000585480.1; ENST00000616066.4; ENST00000592940.2; ENST00000589115.5; ENST00000622390.4
External Link RMBase: m6A_site_407155