Epigenetic Target Information

General Information of the Epigenetic Target (ID: EPITAR00004)

Target Name	Small nuclear ribonucleoprotein Sm D3 (SNRPD3)
Synonyms	Sm-D3; snRNP core protein D3 Click to Show/Hide
Gene Name	SNRPD3
Sequence	MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGNIFQKRR Click to Show/Hide
Family	SnRNP core protein family
Function	Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (PubMed:11991638, PubMed:18984161, PubMed:19325628, PubMed:25555158, PubMed:26912367, PubMed:28502770, PubMed:28781166, PubMed:28076346, PubMed:32494006). Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes (PubMed:11991638, PubMed:28502770, PubMed:28781166, PubMed:28076346). As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs (PubMed:15146077, PubMed:33509932). As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing (By similarity). Click to Show/Hide
Gene ID	6634
HGNC ID	HGNC:11160
Ensembl Gene ID	ENSG00000100028
KEGG ID	hsa:6634
Chromosomal Location	22q11.23

RNA Modification Sequencing Data Associated with the Target (ID: EPITAR00004)

Small nuclear ribonucleoprotein Sm D3 (SNRPD3)

Adenosine-to-Inosine editing (A-to-I)

In total 35 m6A sequence/site(s) in this target gene
mod ID: A2ISITE011111		Click to Show/Hide the Full List
mod site	chr22:24559620-24559621:+		[1]
Sequence	CAGACCTGGAATCAGCTTGTAGCCTGCCCCCTAGGGTGACT
Transcript ID List	ENST00000439775.1; ENST00000402849.5; ENST00000652248.1; ENST00000404603.5; rmsk_5257166; ENST00000215829.8
External Link	RMBase: RNA-editing_site_91285
mod ID: A2ISITE011112		Click to Show/Hide the Full List
mod site	chr22:24569428-24569429:+		[1]
Sequence	GATTCTTCATTGGTATCTTTAGCTGCTGTACATGTTTTATA
Transcript ID List	ENST00000652248.1; ENST00000402849.5; ENST00000215829.8; ENST00000439775.1; ENST00000404603.5
External Link	RMBase: RNA-editing_site_91286
mod ID: A2ISITE011113		Click to Show/Hide the Full List
mod site	chr22:24571369-24571370:+		[1]
Sequence	CAGTGTGGGACTGGAAGGCAAGAGTGTGCTGCTAGCTCCTG
Transcript ID List	ENST00000439775.1; ENST00000215829.8; ENST00000652248.1; ENST00000402849.5; ENST00000404603.5
External Link	RMBase: RNA-editing_site_91287
mod ID: A2ISITE011114		Click to Show/Hide the Full List
mod site	chr22:24572604-24572605:+		[2]
Sequence	ACCTCGTGTGTACTAAAAATAAAAAAATTAGCCGGGTGCGG
Transcript ID List	ENST00000439775.1; ENST00000652248.1; ENST00000215829.8; ENST00000402849.5; rmsk_5257205; ENST00000404603.5
External Link	RMBase: RNA-editing_site_91288
mod ID: A2ISITE011115		Click to Show/Hide the Full List
mod site	chr22:24572608-24572609:+		[2]
Sequence	CGTGTGTACTAAAAATAAAAAAATTAGCCGGGTGCGGTGGC
Transcript ID List	ENST00000404603.5; rmsk_5257205; ENST00000439775.1; ENST00000402849.5; ENST00000215829.8; ENST00000652248.1
External Link	RMBase: RNA-editing_site_91289
mod ID: A2ISITE011116		Click to Show/Hide the Full List
mod site	chr22:24572613-24572614:+		[2]
Sequence	GTACTAAAAATAAAAAAATTAGCCGGGTGCGGTGGCATGTA
Transcript ID List	ENST00000404603.5; rmsk_5257205; ENST00000402849.5; ENST00000215829.8; ENST00000439775.1; ENST00000652248.1
External Link	RMBase: RNA-editing_site_91290
mod ID: A2ISITE011117		Click to Show/Hide the Full List
mod site	chr22:24572633-24572634:+		[1]
Sequence	AGCCGGGTGCGGTGGCATGTACCTGTAGTCCCAGCTACTCG
Transcript ID List	ENST00000402849.5; ENST00000439775.1; ENST00000215829.8; ENST00000404603.5; ENST00000652248.1; rmsk_5257205
External Link	RMBase: RNA-editing_site_91291
mod ID: A2ISITE011118		Click to Show/Hide the Full List
mod site	chr22:24572639-24572640:+		[3]
Sequence	GTGCGGTGGCATGTACCTGTAGTCCCAGCTACTCGGGAGGC
Transcript ID List	ENST00000652248.1; ENST00000215829.8; rmsk_5257205; ENST00000439775.1; ENST00000402849.5; ENST00000404603.5
External Link	RMBase: RNA-editing_site_91292
mod ID: A2ISITE011119		Click to Show/Hide the Full List
mod site	chr22:24572645-24572646:+		[3]
Sequence	TGGCATGTACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGC
Transcript ID List	ENST00000402849.5; ENST00000439775.1; rmsk_5257205; ENST00000215829.8; ENST00000404603.5; ENST00000652248.1
External Link	RMBase: RNA-editing_site_91293
mod ID: A2ISITE011120		Click to Show/Hide the Full List
mod site	chr22:24572681-24572682:+		[2]
Sequence	GAGGCAGAAGATTCGCTTGAACCCAGGAGGTGGACATTGCA
Transcript ID List	ENST00000215829.8; ENST00000439775.1; ENST00000404603.5; ENST00000652248.1; rmsk_5257205; ENST00000402849.5
External Link	RMBase: RNA-editing_site_91294
mod ID: A2ISITE011121		Click to Show/Hide the Full List
mod site	chr22:24572744-24572745:+		[1]
Sequence	TACTCCAGCTTGGGTGACAGAGCGAGACTGCACCTCAAAAA
Transcript ID List	ENST00000404603.5; ENST00000652248.1; ENST00000439775.1; rmsk_5257205; ENST00000402849.5; ENST00000215829.8
External Link	RMBase: RNA-editing_site_91295
mod ID: A2ISITE011122		Click to Show/Hide the Full List
mod site	chr22:24573020-24573021:+		[3]
Sequence	AAAACCAGCCCGCGAGACATAGTGAGACCCTGTCTCTACAA
Transcript ID List	ENST00000402849.5; rmsk_5257206; ENST00000215829.8; ENST00000652248.1; ENST00000404603.5; ENST00000439775.1
External Link	RMBase: RNA-editing_site_91296
mod ID: A2ISITE011123		Click to Show/Hide the Full List
mod site	chr22:24573123-24573124:+		[3]
Sequence	TGAGGTGGGAGGATCACTTGAGCCTGGGAGTATGAGGCTGC
Transcript ID List	ENST00000439775.1; ENST00000215829.8; ENST00000402849.5; ENST00000652248.1; ENST00000404603.5; rmsk_5257206
External Link	RMBase: RNA-editing_site_91297
mod ID: A2ISITE011124		Click to Show/Hide the Full List
mod site	chr22:24573660-24573661:+		[3]
Sequence	GAGGCGGGAGGATCACTTGAACCTAGGAGTTTGAGACTAGC
Transcript ID List	ENST00000439775.1; ENST00000402849.5; ENST00000652248.1; ENST00000404603.5; rmsk_5257207; ENST00000215829.8
External Link	RMBase: RNA-editing_site_91298
mod ID: A2ISITE011125		Click to Show/Hide the Full List
mod site	chr22:24573813-24573814:+		[3]
Sequence	CCACATGAGCCCAGGAGATTAAGGCTGCAGTGAGCTATAAT
Transcript ID List	ENST00000404603.5; ENST00000215829.8; ENST00000402849.5; ENST00000652248.1; rmsk_5257207; ENST00000439775.1
External Link	RMBase: RNA-editing_site_91299
mod ID: A2ISITE011126		Click to Show/Hide the Full List
mod site	chr22:24574573-24574574:+		[3]
Sequence	GCTTGTTTTAAGACGGTCTCACTCTTCCCCAGGCGGGAGTG
Transcript ID List	ENST00000215829.8; ENST00000402849.5; ENST00000652248.1; ENST00000439775.1; ENST00000404603.5
External Link	RMBase: RNA-editing_site_91300
mod ID: A2ISITE011127		Click to Show/Hide the Full List
mod site	chr22:24574596-24574597:+		[4]
Sequence	CTTCCCCAGGCGGGAGTGCAATGGCACAATCATGGCTCACT
Transcript ID List	ENST00000439775.1; ENST00000404603.5; ENST00000215829.8; ENST00000652248.1; ENST00000402849.5
External Link	RMBase: RNA-editing_site_91301
mod ID: A2ISITE011128		Click to Show/Hide the Full List
mod site	chr22:24574607-24574608:+		[4]
Sequence	GGGAGTGCAATGGCACAATCATGGCTCACTGCAGCCTCAAC
Transcript ID List	ENST00000439775.1; ENST00000652248.1; ENST00000404603.5; ENST00000215829.8; ENST00000402849.5
External Link	RMBase: RNA-editing_site_91302
mod ID: A2ISITE011129		Click to Show/Hide the Full List
mod site	chr22:24574640-24574641:+		[4]
Sequence	GCCTCAACCTTCTCGGGCTCAGGTGATTCTCCCACCTCAGC
Transcript ID List	ENST00000402849.5; ENST00000215829.8; ENST00000652248.1; ENST00000404603.5; ENST00000439775.1
External Link	RMBase: RNA-editing_site_91303
mod ID: A2ISITE011130		Click to Show/Hide the Full List
mod site	chr22:24574653-24574654:+		[3]
Sequence	CGGGCTCAGGTGATTCTCCCACCTCAGCCTCCTGAGTAGCT
Transcript ID List	ENST00000402849.5; ENST00000404603.5; ENST00000439775.1; ENST00000215829.8; ENST00000652248.1
External Link	RMBase: RNA-editing_site_91304
mod ID: A2ISITE011131		Click to Show/Hide the Full List
mod site	chr22:24574670-24574671:+		[4]
Sequence	CCCACCTCAGCCTCCTGAGTAGCTAGAAATACTGGTGCACA
Transcript ID List	ENST00000652248.1; ENST00000404603.5; ENST00000402849.5; ENST00000215829.8; ENST00000439775.1
External Link	RMBase: RNA-editing_site_91305
mod ID: A2ISITE011132		Click to Show/Hide the Full List
mod site	chr22:24574674-24574675:+		[4]
Sequence	CCTCAGCCTCCTGAGTAGCTAGAAATACTGGTGCACACCAC
Transcript ID List	ENST00000402849.5; ENST00000652248.1; ENST00000215829.8; ENST00000404603.5; ENST00000439775.1
External Link	RMBase: RNA-editing_site_91306
mod ID: A2ISITE011133		Click to Show/Hide the Full List
mod site	chr22:24574693-24574694:+		[4]
Sequence	TAGAAATACTGGTGCACACCACCATGCCTAGCTAATTTTTG
Transcript ID List	ENST00000215829.8; ENST00000652248.1; ENST00000439775.1; ENST00000404603.5; ENST00000402849.5
External Link	RMBase: RNA-editing_site_91307
mod ID: A2ISITE011134		Click to Show/Hide the Full List
mod site	chr22:24574702-24574703:+		[4]
Sequence	TGGTGCACACCACCATGCCTAGCTAATTTTTGTATTTTTTG
Transcript ID List	ENST00000439775.1; ENST00000402849.5; ENST00000215829.8; ENST00000404603.5; ENST00000652248.1
External Link	RMBase: RNA-editing_site_91308
mod ID: A2ISITE011135		Click to Show/Hide the Full List
mod site	chr22:24574706-24574707:+		[4]
Sequence	GCACACCACCATGCCTAGCTAATTTTTGTATTTTTTGTAGA
Transcript ID List	ENST00000404603.5; ENST00000215829.8; ENST00000402849.5; ENST00000652248.1; ENST00000439775.1
External Link	RMBase: RNA-editing_site_91309
mod ID: A2ISITE011136		Click to Show/Hide the Full List
mod site	chr22:24574741-24574742:+		[4]
Sequence	TGTAGAGACAGGGTTTTGCCATGTTGCCCAAGCTGGTCTTG
Transcript ID List	ENST00000215829.8; ENST00000439775.1; ENST00000404603.5; ENST00000402849.5; ENST00000652248.1
External Link	RMBase: RNA-editing_site_91310
mod ID: A2ISITE011137		Click to Show/Hide the Full List
mod site	chr22:24574751-24574752:+		[4]
Sequence	GGGTTTTGCCATGTTGCCCAAGCTGGTCTTGAACTCCGGGG
Transcript ID List	ENST00000439775.1; ENST00000215829.8; ENST00000652248.1; ENST00000402849.5; ENST00000404603.5
External Link	RMBase: RNA-editing_site_91311
mod ID: A2ISITE011138		Click to Show/Hide the Full List
mod site	chr22:24575353-24575354:+		[3]
Sequence	TTGGAATTAGTGCCGGGCGCAGTGGCTCATTCCTGTAATCC
Transcript ID List	rmsk_5257212; ENST00000402849.5; ENST00000439775.1; ENST00000404603.5; ENST00000652248.1
External Link	RMBase: RNA-editing_site_91312
mod ID: A2ISITE011139		Click to Show/Hide the Full List
mod site	chr22:24575464-24575465:+		[1]
Sequence	GAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGG
Transcript ID List	rmsk_5257212; ENST00000439775.1; ENST00000402849.5; ENST00000404603.5; ENST00000652248.1
External Link	RMBase: RNA-editing_site_91313
mod ID: A2ISITE011140		Click to Show/Hide the Full List
mod site	chr22:24576379-24576380:+		[1]
Sequence	CCTGCCTCAGCCTCCCAAGTAACTGGGATTACAGGCACCTG
Transcript ID List	ENST00000404603.5; ENST00000402849.5; ENST00000652248.1; ENST00000439775.1
External Link	RMBase: RNA-editing_site_91314
mod ID: A2ISITE011141		Click to Show/Hide the Full List
mod site	chr22:24576380-24576381:+		[1]
Sequence	CTGCCTCAGCCTCCCAAGTAACTGGGATTACAGGCACCTGC
Transcript ID List	ENST00000652248.1; ENST00000439775.1; ENST00000404603.5; ENST00000402849.5
External Link	RMBase: RNA-editing_site_91315
mod ID: A2ISITE011142		Click to Show/Hide the Full List
mod site	chr22:24576416-24576417:+		[1]
Sequence	CCTGCCCCAACACCCGGCTAATTTTTTGTATTTTTAGTAGA
Transcript ID List	ENST00000439775.1; ENST00000652248.1; ENST00000404603.5; ENST00000402849.5
External Link	RMBase: RNA-editing_site_91316
mod ID: A2ISITE011143		Click to Show/Hide the Full List
mod site	chr22:24576513-24576514:+		[3]
Sequence	CACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTG
Transcript ID List	ENST00000404603.5; ENST00000439775.1; ENST00000652248.1; ENST00000402849.5
External Link	RMBase: RNA-editing_site_91317
mod ID: A2ISITE011144		Click to Show/Hide the Full List
mod site	chr22:24577317-24577318:+		[1]
Sequence	GGTGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCT
Transcript ID List	ENST00000404603.5; ENST00000402849.5; ENST00000652248.1; ENST00000439775.1; rmsk_5257219
External Link	RMBase: RNA-editing_site_91318
mod ID: A2ISITE011145		Click to Show/Hide the Full List
mod site	chr22:24577828-24577829:+		[1]
Sequence	GTGTTGGGGCGGGTGCCTGTAATCCCAGCTACTCAGGAGGC
Transcript ID List	ENST00000404603.5; ENST00000402849.5; ENST00000439775.1; rmsk_5257220; ENST00000652248.1
External Link	RMBase: RNA-editing_site_91319

5-methylcytidine (m5C)

In total 11 m6A sequence/site(s) in this target gene
mod ID: M5CSITE002876		Click to Show/Hide the Full List
mod site	chr22:24557660-24557661:+		[5]
Sequence	GTCTCTCTCATTGTAGAACTCTCTTCCTGCCAAGATGTCTA
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000215829.8; ENST00000404603.5; ENST00000468770.1; ENST00000402849.5; ENST00000439775.1; ENST00000652248.1
External Link	RMBase: m5C_site_30525
mod ID: M5CSITE002877		Click to Show/Hide the Full List
mod site	chr22:24574648-24574649:+
Sequence	CTTCTCGGGCTCAGGTGATTCTCCCACCTCAGCCTCCTGAG
Cell/Tissue List	T24
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000652248.1; ENST00000215829.8; ENST00000439775.1; ENST00000402849.5; ENST00000404603.5
External Link	RMBase: m5C_site_30526
mod ID: M5CSITE002878		Click to Show/Hide the Full List
mod site	chr22:24574650-24574651:+
Sequence	TCTCGGGCTCAGGTGATTCTCCCACCTCAGCCTCCTGAGTA
Cell/Tissue List	T24
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000402849.5; ENST00000215829.8; ENST00000652248.1; ENST00000439775.1; ENST00000404603.5
External Link	RMBase: m5C_site_30527
mod ID: M5CSITE002879		Click to Show/Hide the Full List
mod site	chr22:24574651-24574652:+
Sequence	CTCGGGCTCAGGTGATTCTCCCACCTCAGCCTCCTGAGTAG
Cell/Tissue List	T24
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000215829.8; ENST00000439775.1; ENST00000402849.5; ENST00000652248.1; ENST00000404603.5
External Link	RMBase: m5C_site_30528
mod ID: M5CSITE002880		Click to Show/Hide the Full List
mod site	chr22:24574652-24574653:+
Sequence	TCGGGCTCAGGTGATTCTCCCACCTCAGCCTCCTGAGTAGC
Cell/Tissue List	T24
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000652248.1; ENST00000404603.5; ENST00000402849.5; ENST00000439775.1; ENST00000215829.8
External Link	RMBase: m5C_site_30529
mod ID: M5CSITE002881		Click to Show/Hide the Full List
mod site	chr22:24574654-24574655:+
Sequence	GGGCTCAGGTGATTCTCCCACCTCAGCCTCCTGAGTAGCTA
Cell/Tissue List	T24
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000402849.5; ENST00000404603.5; ENST00000652248.1; ENST00000439775.1; ENST00000215829.8
External Link	RMBase: m5C_site_30530
mod ID: M5CSITE002882		Click to Show/Hide the Full List
mod site	chr22:24574655-24574656:+
Sequence	GGCTCAGGTGATTCTCCCACCTCAGCCTCCTGAGTAGCTAG
Cell/Tissue List	T24
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000439775.1; ENST00000652248.1; ENST00000404603.5; ENST00000215829.8; ENST00000402849.5
External Link	RMBase: m5C_site_30531
mod ID: M5CSITE002883		Click to Show/Hide the Full List
mod site	chr22:24574657-24574658:+
Sequence	CTCAGGTGATTCTCCCACCTCAGCCTCCTGAGTAGCTAGAA
Cell/Tissue List	T24
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000404603.5; ENST00000402849.5; ENST00000439775.1; ENST00000652248.1; ENST00000215829.8
External Link	RMBase: m5C_site_30532
mod ID: M5CSITE002884		Click to Show/Hide the Full List
mod site	chr22:24574660-24574661:+
Sequence	AGGTGATTCTCCCACCTCAGCCTCCTGAGTAGCTAGAAATA
Cell/Tissue List	T24
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000402849.5; ENST00000215829.8; ENST00000439775.1; ENST00000652248.1; ENST00000404603.5
External Link	RMBase: m5C_site_30533
mod ID: M5CSITE002885		Click to Show/Hide the Full List
mod site	chr22:24574661-24574662:+
Sequence	GGTGATTCTCCCACCTCAGCCTCCTGAGTAGCTAGAAATAC
Cell/Tissue List	T24
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000404603.5; ENST00000439775.1; ENST00000215829.8; ENST00000402849.5; ENST00000652248.1
External Link	RMBase: m5C_site_30534
mod ID: M5CSITE002886		Click to Show/Hide the Full List
mod site	chr22:24574663-24574664:+
Sequence	TGATTCTCCCACCTCAGCCTCCTGAGTAGCTAGAAATACTG
Cell/Tissue List	T24
Seq Type List	Bisulfite-seq
Transcript ID List	ENST00000439775.1; ENST00000215829.8; ENST00000652248.1; ENST00000402849.5; ENST00000404603.5
External Link	RMBase: m5C_site_30535

N6-methyladenosine (m6A)

In total 36 m6A sequence/site(s) in this target gene
mod ID: M6ASITE056943		Click to Show/Hide the Full List
mod site	chr22:24556041-24556042:+		[6]
Sequence	CGTAGCATCTTTCGCAGCGGACCGAAGAGAAGAAAAGTAGG
Motif Score	3.622404762
Cell/Tissue List	HeLa; HepG2; A549; HEK293T; fibroblasts; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; HEK293A-TOA; iSLK; MSC; TIME; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000404603.5; ENST00000439775.1; ENST00000402849.5; ENST00000468770.1; ENST00000652248.1; ENST00000215829.8
External Link	RMBase: m6A_site_558459
mod ID: M6ASITE056945		Click to Show/Hide the Full List
mod site	chr22:24557720-24557721:+		[7]
Sequence	ACTGCATGAGGCCGAGGGCCACATTGTGACATGTGAGACGA
Motif Score	2.053113095
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000468770.1; ENST00000652248.1; ENST00000404603.5; ENST00000215829.8; ENST00000402849.5; ENST00000439775.1
External Link	RMBase: m6A_site_558460
mod ID: M6ASITE056946		Click to Show/Hide the Full List
mod site	chr22:24557728-24557729:+		[8]
Sequence	AGGCCGAGGGCCACATTGTGACATGTGAGACGAACACCGGT
Motif Score	2.859755952
Cell/Tissue List	kidney
Seq Type List	m6A-REF-seq
Transcript ID List	ENST00000402849.5; ENST00000439775.1; ENST00000468770.1; ENST00000652248.1; ENST00000215829.8; ENST00000404603.5
External Link	RMBase: m6A_site_558461
mod ID: M6ASITE056947		Click to Show/Hide the Full List
mod site	chr22:24557741-24557742:+		[9]
Sequence	CATTGTGACATGTGAGACGAACACCGGTGAGGTATATCGGG
Motif Score	2.951386905
Cell/Tissue List	HepG2; A549; hESC-HEK293T; fibroblasts; MT4; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; MSC; TIME; TREX; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000404603.5; ENST00000439775.1; ENST00000402849.5; ENST00000468770.1; ENST00000215829.8; ENST00000652248.1
External Link	RMBase: m6A_site_558462
mod ID: M6ASITE056948		Click to Show/Hide the Full List
mod site	chr22:24557783-24557784:+		[9]
Sequence	GAAGCTCATTGAAGCAGAGGACAACATGAACTGCCAGGTAT
Motif Score	3.643047619
Cell/Tissue List	HepG2; A549; hESC-HEK293T; MT4; H1299; Huh7; Jurkat; CD4T; peripheral-blood; iSLK; MSC; TIME; TREX; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000439775.1; ENST00000468770.1; ENST00000404603.5; ENST00000215829.8; ENST00000652248.1; ENST00000402849.5
External Link	RMBase: m6A_site_558463
mod ID: M6ASITE056949		Click to Show/Hide the Full List
mod site	chr22:24557792-24557793:+		[9]
Sequence	TGAAGCAGAGGACAACATGAACTGCCAGGTATTCTGCTTTG
Motif Score	3.373380952
Cell/Tissue List	HepG2; A549; MT4; H1299; Huh7; Jurkat; CD4T; peripheral-blood; iSLK; MSC; TIME; TREX; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000468770.1; ENST00000439775.1; ENST00000402849.5; ENST00000652248.1; ENST00000215829.8; ENST00000404603.5
External Link	RMBase: m6A_site_558464
mod ID: M6ASITE056950		Click to Show/Hide the Full List
mod site	chr22:24557855-24557856:+		[9]
Sequence	ATGGCCCTGTGTCTTGAAGGACAGAAAAGTGTGTGTTGAGG
Motif Score	3.643047619
Cell/Tissue List	HepG2; A549; MT4; Huh7; CD4T; peripheral-blood; iSLK; TIME; endometrial
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000402849.5; ENST00000439775.1; ENST00000468770.1; ENST00000652248.1; ENST00000215829.8; ENST00000404603.5
External Link	RMBase: m6A_site_558465
mod ID: M6ASITE056951		Click to Show/Hide the Full List
mod site	chr22:24568080-24568081:+		[8]
Sequence	CCGCTTTCTGATTTTGCCTGACATGCTGAAGAACGCACCCA
Motif Score	2.859755952
Cell/Tissue List	liver; hESC-HEK293T
Seq Type List	m6A-REF-seq; MAZTER-seq
Transcript ID List	ENST00000215829.8; ENST00000404603.5; ENST00000402849.5; ENST00000439775.1; ENST00000652248.1
External Link	RMBase: m6A_site_558466
mod ID: M6ASITE056952		Click to Show/Hide the Full List
mod site	chr22:24568092-24568093:+		[10]
Sequence	TTTGCCTGACATGCTGAAGAACGCACCCATGTTAAAGAGCA
Motif Score	2.925321429
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000402849.5; ENST00000439775.1; ENST00000652248.1; ENST00000404603.5; ENST00000215829.8
External Link	RMBase: m6A_site_558467
mod ID: M6ASITE056953		Click to Show/Hide the Full List
mod site	chr22:24568125-24568126:+		[6]
Sequence	AAAGAGCATGAAAAATAAAAACCAAGGCTCAGGGGCTGGCC
Motif Score	2.185083333
Cell/Tissue List	HeLa; HepG2; HEK293T; hNPCs; fibroblasts; A549; H1299; Huh7; peripheral-blood; endometrial; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000652248.1; ENST00000404603.5; ENST00000402849.5; ENST00000439775.1; ENST00000215829.8
External Link	RMBase: m6A_site_558468
mod ID: M6ASITE056954		Click to Show/Hide the Full List
mod site	chr22:24571954-24571955:+		[6]
Sequence	ACGTGGAATGGGACGTGGAAACATCTTTCAAAAGCGAAGAT
Motif Score	2.20572619
Cell/Tissue List	HeLa; HepG2; HEK293T; hESC-HEK293T; hNPCs; fibroblasts; A549; LCLs; H1299; MM6; Huh7; Jurkat; peripheral-blood; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq; MAZTER-seq
Transcript ID List	ENST00000652248.1; ENST00000402849.5; ENST00000404603.5; ENST00000215829.8; ENST00000439775.1
External Link	RMBase: m6A_site_558469
mod ID: M6ASITE056956		Click to Show/Hide the Full List
mod site	chr22:24571990-24571991:+		[6]
Sequence	AAGATAATTTTCTAAGTTGAACAGAACTTTGTCCTTTTTTC
Motif Score	2.951386905
Cell/Tissue List	HeLa; HepG2; HEK293T; hNPCs; fibroblasts; A549; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq; DART-seq
Transcript ID List	ENST00000652248.1; ENST00000404603.5; ENST00000215829.8; ENST00000402849.5; ENST00000439775.1
External Link	RMBase: m6A_site_558470
mod ID: M6ASITE056957		Click to Show/Hide the Full List
mod site	chr22:24571995-24571996:+		[6]
Sequence	AATTTTCTAAGTTGAACAGAACTTTGTCCTTTTTTCTTTCA
Motif Score	3.373380952
Cell/Tissue List	HeLa; HepG2; HEK293T; hNPCs; fibroblasts; A549; LCLs; H1299; MM6; Huh7; Jurkat; CD4T; peripheral-blood; GSC-11; iSLK; TREX; endometrial; HEC-1-A; NB4
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000439775.1; ENST00000404603.5; ENST00000402849.5; ENST00000652248.1; ENST00000215829.8
External Link	RMBase: m6A_site_558471
mod ID: M6ASITE056958		Click to Show/Hide the Full List
mod site	chr22:24572166-24572167:+		[6]
Sequence	TTTTCTTTGAGAAAATAAGGACTTTGTGTTCATTTGAAGTT
Motif Score	4.065041667
Cell/Tissue List	HeLa; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000404603.5; ENST00000439775.1; ENST00000402849.5; ENST00000652248.1; ENST00000215829.8
External Link	RMBase: m6A_site_558472
mod ID: M6ASITE056959		Click to Show/Hide the Full List
mod site	chr22:24572205-24572206:+		[10]
Sequence	TTTGCTTTGGCTAAATTTTGACACCCTGGGGGATGTCCTGG
Motif Score	2.859755952
Cell/Tissue List	HEK293T; hESC-HEK293T
Seq Type List	DART-seq; MAZTER-seq
Transcript ID List	ENST00000402849.5; ENST00000404603.5; ENST00000215829.8; ENST00000439775.1; ENST00000652248.1
External Link	RMBase: m6A_site_558473
mod ID: M6ASITE056960		Click to Show/Hide the Full List
mod site	chr22:24572238-24572239:+		[10]
Sequence	TGTCCTGGGAGAATGCCAGTACTTTGAAATAGCACAGCTAT
Motif Score	3.278136905
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000402849.5; ENST00000215829.8; ENST00000439775.1; ENST00000404603.5; ENST00000652248.1
External Link	RMBase: m6A_site_558474
mod ID: M6ASITE056961		Click to Show/Hide the Full List
mod site	chr22:24572337-24572338:+		[7]
Sequence	ACCTTGGAGAAGCTCCGAGAACACACAGATTGTGTCTCATT
Motif Score	2.951386905
Cell/Tissue List	hESC-HEK293T
Seq Type List	MAZTER-seq
Transcript ID List	ENST00000404603.5; ENST00000439775.1; rmsk_5257204; ENST00000652248.1; ENST00000215829.8; ENST00000402849.5
External Link	RMBase: m6A_site_558475
mod ID: M6ASITE056962		Click to Show/Hide the Full List
mod site	chr22:24572436-24572437:+		[10]
Sequence	TCATCAGCTCAGCTTTAACAACACAGGTGACTCTTTCCCTT
Motif Score	2.173910714
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000215829.8; ENST00000402849.5; ENST00000652248.1; ENST00000404603.5; ENST00000439775.1
External Link	RMBase: m6A_site_558476
mod ID: M6ASITE056963		Click to Show/Hide the Full List
mod site	chr22:24572595-24572596:+		[10]
Sequence	TATGGTGAAACCTCGTGTGTACTAAAAATAAAAAAATTAGC
Motif Score	3.278136905
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000402849.5; rmsk_5257205; ENST00000439775.1; ENST00000215829.8; ENST00000404603.5; ENST00000652248.1
External Link	RMBase: m6A_site_558477
mod ID: M6ASITE056964		Click to Show/Hide the Full List
mod site	chr22:24573193-24573194:+		[11]
Sequence	AGCCTGGGCAAAAGAGCAAGACTTTGTCTTTAAAGAAAAAT
Motif Score	3.319380952
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000402849.5; ENST00000215829.8; rmsk_5257206; ENST00000404603.5; ENST00000439775.1; ENST00000652248.1
External Link	RMBase: m6A_site_558478
mod ID: M6ASITE056965		Click to Show/Hide the Full List
mod site	chr22:24573238-24573239:+		[10]
Sequence	AGTAGTAAAGAGTATAAGATACACAGGGTGAATAATTGTGA
Motif Score	2.110482143
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000439775.1; ENST00000652248.1; ENST00000404603.5; ENST00000402849.5; ENST00000215829.8
External Link	RMBase: m6A_site_558479
mod ID: M6ASITE056967		Click to Show/Hide the Full List
mod site	chr22:24573258-24573259:+		[10]
Sequence	ACACAGGGTGAATAATTGTGACAAAAACACAGAAACTGGAA
Motif Score	2.859755952
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000439775.1; ENST00000402849.5; ENST00000404603.5; ENST00000652248.1; ENST00000215829.8
External Link	RMBase: m6A_site_558480
mod ID: M6ASITE056968		Click to Show/Hide the Full List
mod site	chr22:24573264-24573265:+		[12]
Sequence	GGTGAATAATTGTGACAAAAACACAGAAACTGGAAAAGCAG
Motif Score	2.20572619
Cell/Tissue List	hNPCs; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000402849.5; ENST00000404603.5; ENST00000439775.1; ENST00000215829.8; ENST00000652248.1
External Link	RMBase: m6A_site_558481
mod ID: M6ASITE056969		Click to Show/Hide the Full List
mod site	chr22:24573272-24573273:+		[12]
Sequence	ATTGTGACAAAAACACAGAAACTGGAAAAGCAGCCTGAAAA
Motif Score	2.627720238
Cell/Tissue List	hNPCs; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000652248.1; ENST00000439775.1; ENST00000215829.8; ENST00000404603.5; ENST00000402849.5
External Link	RMBase: m6A_site_558482
mod ID: M6ASITE056970		Click to Show/Hide the Full List
mod site	chr22:24573368-24573369:+		[11]
Sequence	CATAAGCCATCAAGAGGAAAACTGATCAATTATTGGCTTTT
Motif Score	2.627720238
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000404603.5; ENST00000439775.1; ENST00000215829.8; ENST00000652248.1; ENST00000402849.5
External Link	RMBase: m6A_site_558483
mod ID: M6ASITE056971		Click to Show/Hide the Full List
mod site	chr22:24573406-24573407:+		[10]
Sequence	TTTAGAATATTGCTCATTGAACAGATTATTCAAGTAATGAA
Motif Score	2.951386905
Cell/Tissue List	HEK293T; Huh7
Seq Type List	DART-seq; MeRIP-seq
Transcript ID List	ENST00000652248.1; ENST00000439775.1; ENST00000215829.8; ENST00000404603.5; ENST00000402849.5
External Link	RMBase: m6A_site_558484
mod ID: M6ASITE056972		Click to Show/Hide the Full List
mod site	chr22:24573660-24573661:+		[13]
Sequence	GAGGCGGGAGGATCACTTGAACCTAGGAGTTTGAGACTAGC
Motif Score	2.930744048
Cell/Tissue List	MT4
Seq Type List	MeRIP-seq
Transcript ID List	rmsk_5257207; ENST00000439775.1; ENST00000402849.5; ENST00000215829.8; ENST00000652248.1; ENST00000404603.5
External Link	RMBase: m6A_site_558485
mod ID: M6ASITE056973		Click to Show/Hide the Full List
mod site	chr22:24573675-24573676:+		[13]
Sequence	CTTGAACCTAGGAGTTTGAGACTAGCCTGGGCTGTTAAGCT
Motif Score	3.319380952
Cell/Tissue List	MT4
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000402849.5; ENST00000439775.1; ENST00000404603.5; ENST00000215829.8; rmsk_5257207; ENST00000652248.1
External Link	RMBase: m6A_site_558486
mod ID: M6ASITE056974		Click to Show/Hide the Full List
mod site	chr22:24573708-24573709:+		[13]
Sequence	GTTAAGCTTTGTTAACCAAGACCGCATCTCTACAAAAAATT
Motif Score	2.876744048
Cell/Tissue List	MT4
Seq Type List	MeRIP-seq
Transcript ID List	rmsk_5257207; ENST00000404603.5; ENST00000402849.5; ENST00000652248.1; ENST00000215829.8; ENST00000439775.1
External Link	RMBase: m6A_site_558487
mod ID: M6ASITE056975		Click to Show/Hide the Full List
mod site	chr22:24573889-24573890:+		[10]
Sequence	CCCTGTCTCTTAAATAAAAAACAAATGAAAGCAGTGGTTTT
Motif Score	2.20572619
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000215829.8; rmsk_5257207; ENST00000404603.5; ENST00000652248.1; ENST00000439775.1; ENST00000402849.5
External Link	RMBase: m6A_site_558488
mod ID: M6ASITE056976		Click to Show/Hide the Full List
mod site	chr22:24574042-24574043:+		[10]
Sequence	AAGTATTCTATCTTAAGTAGACCTAAAGCCGTATTTTGACC
Motif Score	2.876744048
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000439775.1; ENST00000402849.5; ENST00000404603.5; ENST00000652248.1; ENST00000215829.8
External Link	RMBase: m6A_site_558489
mod ID: M6ASITE056978		Click to Show/Hide the Full List
mod site	chr22:24574192-24574193:+		[10]
Sequence	CATCCTCGATATCAAAAGCGACTTTTGATGTAGTTCACTCT
Motif Score	3.287565476
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000215829.8; ENST00000439775.1; ENST00000402849.5; ENST00000404603.5; ENST00000652248.1
External Link	RMBase: m6A_site_558490
mod ID: M6ASITE056979		Click to Show/Hide the Full List
mod site	chr22:24574528-24574529:+		[10]
Sequence	AATATGAACATGTTTTCATGACTATTCCTTGATGGTTTTTT
Motif Score	3.28175
Cell/Tissue List	HEK293T
Seq Type List	DART-seq
Transcript ID List	ENST00000404603.5; ENST00000402849.5; ENST00000652248.1; ENST00000439775.1; ENST00000215829.8
External Link	RMBase: m6A_site_558491
mod ID: M6ASITE056980		Click to Show/Hide the Full List
mod site	chr22:24574763-24574764:+		[13]
Sequence	GTTGCCCAAGCTGGTCTTGAACTCCGGGGCTCAAGTGATCT
Motif Score	3.373380952
Cell/Tissue List	MT4
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000215829.8; ENST00000404603.5; ENST00000402849.5; ENST00000439775.1; ENST00000652248.1
External Link	RMBase: m6A_site_558492
mod ID: M6ASITE056981		Click to Show/Hide the Full List
mod site	chr22:24574957-24574958:+		[6]
Sequence	AATTATTAAGATGTGATTAAACTTTTTAAAAATATGACAGT
Motif Score	2.627720238
Cell/Tissue List	HeLa; Huh7
Seq Type List	m6A-seq; MeRIP-seq
Transcript ID List	ENST00000404603.5; ENST00000439775.1; ENST00000652248.1; ENST00000402849.5; ENST00000215829.8
External Link	RMBase: m6A_site_558493
mod ID: M6ASITE056982		Click to Show/Hide the Full List
mod site	chr22:24581944-24581945:+		[11]
Sequence	CTTCCAGGTCCCAGAGAAAAACCTCCATGCTGGGTTGATAG
Motif Score	2.185083333
Cell/Tissue List	Huh7
Seq Type List	MeRIP-seq
Transcript ID List	ENST00000402849.5; ENST00000439775.1; ENST00000652248.1; ENST00000404603.5
External Link	RMBase: m6A_site_558494

Pseudouridine (Pseudo)

In total 1 m6A sequence/site(s) in this target gene
mod ID: PSESITE000178		Click to Show/Hide the Full List
mod site	chr22:24572009-24572010:+		[14]
Sequence	AACAGAACTTTGTCCTTTTTTCTTTCAGGTTATCTGAGTTC
Transcript ID List	ENST00000652248.1; ENST00000402849.5; ENST00000404603.5; ENST00000439775.1; ENST00000215829.8
External Link	RMBase: Pseudo_site_3415

Ref 1	RADAR: a rigorously annotated database of A-to-I RNA editing. Nucleic Acids Res. 2014 Jan;42(Database issue):D109-13. doi: 10.1093/nar/gkt996. Epub 2013 Oct 25.
Ref 2	Systematic identification of abundant A-to-I editing sites in the human transcriptome. Nat Biotechnol. 2004 Aug;22(8):1001-5. doi: 10.1038/nbt996. Epub 2004 Jul 18.
Ref 3	Accurate identification of A-to-I RNA editing in human by transcriptome sequencing. Genome Res. 2012 Jan;22(1):142-50. doi: 10.1101/gr.124107.111. Epub 2011 Sep 29.
Ref 4	Identification of widespread ultra-edited human RNAs. PLoS Genet. 2011 Oct;7(10):e1002317. doi: 10.1371/journal.pgen.1002317. Epub 2011 Oct 20.
Ref 5	5-methylcytosine promotes mRNA export - NSUN2 as the methyltransferase and ALYREF as an m(5)C reader. Cell Res. 2017 May;27(5):606-625. doi: 10.1038/cr.2017.55. Epub 2017 Apr 18.
Ref 6	VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 2018 Feb 27;4:10. doi: 10.1038/s41421-018-0019-0. eCollection 2018.
Ref 7	Deciphering the "m(6)A Code" via Antibody-Independent Quantitative Profiling. Cell. 2019 Jul 25;178(3):731-747.e16. doi: 10.1016/j.cell.2019.06.013. Epub 2019 Jun 27.
Ref 8	Single-base mapping of m(6)A by an antibody-independent method. Sci Adv. 2019 Jul 3;5(7):eaax0250. doi: 10.1126/sciadv.aax0250. eCollection 2019 Jul.
Ref 9	Histone H3 trimethylation at lysine 36 guides m(6)A RNA modification co-transcriptionally. Nature. 2019 Mar;567(7748):414-419. doi: 10.1038/s41586-019-1016-7. Epub 2019 Mar 13.
Ref 10	DART-seq: an antibody-free method for global m(6)A detection. Nat Methods. 2019 Dec;16(12):1275-1280. doi: 10.1038/s41592-019-0570-0. Epub 2019 Sep 23.
Ref 11	N6-Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection. Cell Host Microbe. 2016 Nov 9;20(5):654-665. doi: 10.1016/j.chom.2016.09.015. Epub 2016 Oct 20.
Ref 12	Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites. Cell Rep. 2014 Jul 10;8(1):284-96. doi: 10.1016/j.celrep.2014.05.048. Epub 2014 Jun 26.
Ref 13	Dynamics of the human and viral m(6)A RNA methylomes during HIV-1 infection of T cells. Nat Microbiol. 2016 Feb 22;1:16011. doi: 10.1038/nmicrobiol.2016.11.
Ref 14	Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA. Cell. 2014 Sep 25;159(1):148-162. doi: 10.1016/j.cell.2014.08.028. Epub 2014 Sep 11.

Epigenetic Target Information

Cite M6AREG

Correspondence

Prof. Feng ZHU

Prof. Shuiping Liu

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